RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 GALK1P51570 392 aa8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 NLRP12P59046 1061 aa8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 DMC1Q14565 340 aa8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 VEPH1Q14D04 833 aa8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 KARSQ15046 597 aaKnown RBP8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 PTPAQ15257 358 aa8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 SAFBQ15424 915 aaKnown RBP eCLIP8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 IL17AQ16552 155 aa8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 DAB2IPQ5VWQ8 1189 aa8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 C9orf57Q5W0N0 161 aa8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 PMS2CLQ68D20 193 aa8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 KIAA1211LQ6NV74 962 aa8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 ARMCX5Q6P1M9 558 aa8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 SYT13Q7L8C5 426 aa8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 LRRTM3Q86VH5 581 aa8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 MAB21L3Q8N8X9 362 aa8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 SPIRE2Q8WWL2 714 aa8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 ZCCHC14Q8WYQ9 949 aaKnown RBP8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 P2RY13Q9BPV8 354 aa8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 NTPCRQ9BSD7 190 aaKnown RBP8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 TPSD1Q9BZJ3 242 aa8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 ZCWPW1Q9H0M4 648 aa8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 FOXP1Q9H334 677 aaPredicted RBP8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 C17orf75Q9HAS0 396 aa8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 EBF1Q9UH73 591 aa8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 TBX20Q9UMR3 447 aa8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 DNM3Q9UQ16 869 aa8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 CABIN1Q9Y6J0 2220 aa8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 SHROOM3Q8TF72 1996 aa8.84□□□□□ -0.99
CCDC88C-214ENST00000557507 ASXL3Q9C0F0 2248 aa8.84□□□□□ -0.99
CCDC88C-214ENST00000557507 TMEM8BA6NDV4 472 aa8.84□□□□□ -0.99
CCDC88C-214ENST00000557507 LOC400499M0QZD8 3231 aa8.84□□□□□ -0.99
CCDC88C-214ENST00000557507 F11P03951 625 aa8.84□□□□□ -0.99
CCDC88C-214ENST00000557507 CYP11A1P05108 521 aa8.84□□□□□ -0.99
CCDC88C-214ENST00000557507 HAPLN1P10915 354 aaPredicted RBP8.84□□□□□ -0.99
CCDC88C-214ENST00000557507 CSRP1P21291 193 aaKnown RBP8.84□□□□□ -0.99
CCDC88C-214ENST00000557507 DRD1P21728 446 aa8.84□□□□□ -0.99
CCDC88C-214ENST00000557507 AVPR1AP37288 418 aa8.84□□□□□ -0.99
CCDC88C-214ENST00000557507 TUFMP49411 452 aaKnown RBP8.84□□□□□ -0.99
CCDC88C-214ENST00000557507 TOB1P50616 345 aaPredicted RBP8.84□□□□□ -0.99
CCDC88C-214ENST00000557507 DGKEP52429 567 aa8.84□□□□□ -0.99
CCDC88C-214ENST00000557507 NCKAP1LP55160 1127 aa8.84□□□□□ -0.99
CCDC88C-214ENST00000557507 ANAPC15P60006 121 aa8.84□□□□□ -0.99
CCDC88C-214ENST00000557507 BFSP1Q12934 665 aa8.84□□□□□ -0.99
CCDC88C-214ENST00000557507 MTF1Q14872 753 aa8.84□□□□□ -0.99
CCDC88C-214ENST00000557507 SPATA1Q5VX52 437 aa8.84□□□□□ -0.99
CCDC88C-214ENST00000557507 TXNDC8Q6A555 127 aa8.84□□□□□ -0.99
CCDC88C-214ENST00000557507 JADE1Q6IE81 842 aa8.84□□□□□ -0.99
CCDC88C-214ENST00000557507 DEFB124Q8NES8 71 aa8.84□□□□□ -0.99
CCDC88C-214ENST00000557507 TMEM131Q92545 1883 aa8.84□□□□□ -0.99
CCDC88C-214ENST00000557507 BICD1Q96G01 975 aa8.84□□□□□ -0.99
CCDC88C-214ENST00000557507 C8orf76Q96K31 380 aa8.84□□□□□ -0.99
CCDC88C-214ENST00000557507 HELZ2Q9BYK8 2649 aaKnown RBP8.84□□□□□ -0.99
CCDC88C-214ENST00000557507 KIF9Q9HAQ2 790 aa8.84□□□□□ -0.99
CCDC88C-214ENST00000557507 TMEM9BQ9NQ34 198 aa8.84□□□□□ -0.99
CCDC88C-214ENST00000557507 TDP1Q9NUW8 608 aa8.84□□□□□ -0.99
CCDC88C-214ENST00000557507 ABI2Q9NYB9 513 aaPredicted RBP8.84□□□□□ -0.99
CCDC88C-214ENST00000557507 PCDHB6Q9Y5E3 794 aa8.84□□□□□ -0.99
CCDC88C-214ENST00000557507 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.84□□□□□ -0.99
CCDC88C-214ENST00000557507 WNT6Q9Y6F9 365 aa8.84□□□□□ -0.99
CCDC88C-214ENST00000557507 NPHP3-ACAD11A0A0J9YXS1 232 aa8.83□□□□□ -1
CCDC88C-214ENST00000557507 ANO9A1A5B4 782 aa8.83□□□□□ -1
CCDC88C-214ENST00000557507 PIRO00625 290 aa8.83□□□□□ -1
CCDC88C-214ENST00000557507 HNRNPDLO14979 420 aaKnown RBP8.83□□□□□ -1
CCDC88C-214ENST00000557507 KHNYNO15037 678 aaKnown RBP8.83□□□□□ -1
CCDC88C-214ENST00000557507 OGTO15294 1046 aa8.83□□□□□ -1
CCDC88C-214ENST00000557507 XPOTO43592 962 aaKnown RBP8.83□□□□□ -1
CCDC88C-214ENST00000557507 HYAL3O43820 417 aaPredicted RBP8.83□□□□□ -1
CCDC88C-214ENST00000557507 ADRB2P07550 413 aa8.83□□□□□ -1
CCDC88C-214ENST00000557507 CEACAM1P13688 526 aa8.83□□□□□ -1
CCDC88C-214ENST00000557507 DDX6P26196 483 aaKnown RBP eCLIP8.83□□□□□ -1
CCDC88C-214ENST00000557507 TRAPPC10P48553 1259 aa8.83□□□□□ -1
CCDC88C-214ENST00000557507 LIG4P49917 911 aa8.83□□□□□ -1
CCDC88C-214ENST00000557507 IRX4P78413 519 aa8.83□□□□□ -1
CCDC88C-214ENST00000557507 RING1Q06587 406 aa8.83□□□□□ -1
CCDC88C-214ENST00000557507 USP4Q13107 963 aa8.83□□□□□ -1
CCDC88C-214ENST00000557507 PSMD2Q13200 908 aa8.83□□□□□ -1
CCDC88C-214ENST00000557507 PDIA5Q14554 519 aa8.83□□□□□ -1
CCDC88C-214ENST00000557507 ZNF268Q14587 947 aaPredicted RBP8.83□□□□□ -1
CCDC88C-214ENST00000557507 PDGFRLQ15198 375 aa8.83□□□□□ -1
CCDC88C-214ENST00000557507 RABEP1Q15276 862 aa8.83□□□□□ -1
CCDC88C-214ENST00000557507 ZRSR1Q15695 479 aaKnown RBP8.83□□□□□ -1
CCDC88C-214ENST00000557507 ZNF77Q15935 545 aa8.83□□□□□ -1
CCDC88C-214ENST00000557507 TAF12Q16514 161 aa8.83□□□□□ -1
CCDC88C-214ENST00000557507 UAP1L1Q3KQV9 507 aa8.83□□□□□ -1
CCDC88C-214ENST00000557507 FBXO43Q4G163 708 aa8.83□□□□□ -1
CCDC88C-214ENST00000557507 SDHAF4Q5VUM1 108 aa8.83□□□□□ -1
CCDC88C-214ENST00000557507 KRT79Q5XKE5 535 aa8.83□□□□□ -1
CCDC88C-214ENST00000557507 ANO7Q6IWH7 933 aa8.83□□□□□ -1
CCDC88C-214ENST00000557507 SLC39A4Q6P5W5 647 aa8.83□□□□□ -1
CCDC88C-214ENST00000557507 CYP2U1Q7Z449 544 aa8.83□□□□□ -1
CCDC88C-214ENST00000557507 CPA6Q8N4T0 437 aa8.83□□□□□ -1
CCDC88C-214ENST00000557507 TSTD1Q8NFU3 115 aa8.83□□□□□ -1
CCDC88C-214ENST00000557507 SPPL2BQ8TCT7 592 aa8.83□□□□□ -1
CCDC88C-214ENST00000557507 CD101Q93033 1021 aa8.83□□□□□ -1
CCDC88C-214ENST00000557507 ACDQ96AP0 544 aa8.83□□□□□ -1
CCDC88C-214ENST00000557507 PNMA5Q96PV4 448 aa8.83□□□□□ -1
CCDC88C-214ENST00000557507 SLC22A12Q96S37 553 aa8.83□□□□□ -1
CCDC88C-214ENST00000557507 PYM1Q9BRP8 204 aaKnown RBP8.83□□□□□ -1
CCDC88C-214ENST00000557507 TIPINQ9BVW5 301 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms