RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 CYP4F22Q6NT55 531 aa13.37□□□□□ -0.27
SHMT2-229ENST00000557348 SERINC5Q86VE9 423 aa13.37□□□□□ -0.27
SHMT2-229ENST00000557348 KLHL7Q8IXQ5 586 aa13.37□□□□□ -0.27
SHMT2-229ENST00000557348 SLC4A11Q8NBS3 891 aa13.37□□□□□ -0.27
SHMT2-229ENST00000557348 GIMAP7Q8NHV1 300 aa13.37□□□□□ -0.27
SHMT2-229ENST00000557348 FNIP1Q8TF40 1166 aa13.37□□□□□ -0.27
SHMT2-229ENST00000557348 EIF2AQ9BY44 585 aaKnown RBP13.37□□□□□ -0.27
SHMT2-229ENST00000557348 FAM114A2Q9NRY5 505 aa13.37□□□□□ -0.27
SHMT2-229ENST00000557348 SLC38A7Q9NVC3 462 aa13.37□□□□□ -0.27
SHMT2-229ENST00000557348 GPR182O15218 404 aa13.36□□□□□ -0.27
SHMT2-229ENST00000557348 RAD51CO43502 376 aa13.36□□□□□ -0.27
SHMT2-229ENST00000557348 PHF2O75151 1096 aa13.36□□□□□ -0.27
SHMT2-229ENST00000557348 CAND2O75155 1236 aa13.36□□□□□ -0.27
SHMT2-229ENST00000557348 ADAMTS4O75173 837 aa13.36□□□□□ -0.27
SHMT2-229ENST00000557348 SLC8A1P32418 973 aa13.36□□□□□ -0.27
SHMT2-229ENST00000557348 RAB27AP51159 221 aa13.36□□□□□ -0.27
SHMT2-229ENST00000557348 RNASE9P60153 205 aaKnown RBP13.36□□□□□ -0.27
SHMT2-229ENST00000557348 CACNB2Q08289 660 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-229ENST00000557348 ZNF268Q14587 947 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-229ENST00000557348 SLMAPQ14BN4 828 aa13.36□□□□□ -0.27
SHMT2-229ENST00000557348 ACAP1Q15027 740 aa13.36□□□□□ -0.27
SHMT2-229ENST00000557348 DEFB115Q30KQ5 88 aa13.36□□□□□ -0.27
SHMT2-229ENST00000557348 SV2CQ496J9 727 aa13.36□□□□□ -0.27
SHMT2-229ENST00000557348 PREPLQ4J6C6 727 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-229ENST00000557348 ZNF394Q53GI3 561 aa13.36□□□□□ -0.27
SHMT2-229ENST00000557348 TWF2Q6IBS0 349 aaKnown RBP13.36□□□□□ -0.27
SHMT2-229ENST00000557348 DCUN1D2Q6PH85 259 aa13.36□□□□□ -0.27
SHMT2-229ENST00000557348 FAM43BQ6ZT52 329 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-229ENST00000557348 KATNAL2Q8IYT4 538 aa13.36□□□□□ -0.27
SHMT2-229ENST00000557348 NIPA2Q8N8Q9 360 aa13.36□□□□□ -0.27
SHMT2-229ENST00000557348 CAPNS2Q96L46 248 aa13.36□□□□□ -0.27
SHMT2-229ENST00000557348 SMYD3Q9H7B4 428 aa13.36□□□□□ -0.27
SHMT2-229ENST00000557348 CDHR5Q9HBB8 845 aa13.36□□□□□ -0.27
SHMT2-229ENST00000557348 GABRQQ9UN88 632 aa13.36□□□□□ -0.27
SHMT2-229ENST00000557348 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.36□□□□□ -0.27
SHMT2-229ENST00000557348 TMEM191CA6NGB0 347 aa13.35□□□□□ -0.27
SHMT2-229ENST00000557348 PODXLO00592 558 aa13.35□□□□□ -0.27
SHMT2-229ENST00000557348 DESP17661 470 aa13.35□□□□□ -0.27
SHMT2-229ENST00000557348 PAX3P23760 479 aa13.35□□□□□ -0.27
SHMT2-229ENST00000557348 LIG3P49916 1009 aa13.35□□□□□ -0.27
SHMT2-229ENST00000557348 CDR1P51861 262 aa13.35□□□□□ -0.27
SHMT2-229ENST00000557348 COPS2P61201 443 aa13.35□□□□□ -0.27
SHMT2-229ENST00000557348 GUCY2DQ02846 1103 aa13.35□□□□□ -0.27
SHMT2-229ENST00000557348 HIC1Q14526 733 aa13.35□□□□□ -0.27
SHMT2-229ENST00000557348 CYP1B1Q16678 543 aa13.35□□□□□ -0.27
SHMT2-229ENST00000557348 PTPROQ16827 1216 aa13.35□□□□□ -0.27
SHMT2-229ENST00000557348 FBXO47Q5MNV8 452 aa13.35□□□□□ -0.27
SHMT2-229ENST00000557348 CXCL17Q6UXB2 119 aa13.35□□□□□ -0.27
SHMT2-229ENST00000557348 LRIG3Q6UXM1 1119 aa13.35□□□□□ -0.27
SHMT2-229ENST00000557348 DPH6Q7L8W6 267 aa13.35□□□□□ -0.27
SHMT2-229ENST00000557348 RNF180Q86T96 592 aa13.35□□□□□ -0.27
SHMT2-229ENST00000557348 SLC13A5Q86YT5 568 aaPredicted RBP13.35□□□□□ -0.27
SHMT2-229ENST00000557348 C12orf50Q8NA57 414 aaPredicted RBP13.35□□□□□ -0.27
SHMT2-229ENST00000557348 KLHDC9Q8NEP7 349 aa13.35□□□□□ -0.27
SHMT2-229ENST00000557348 TMEM40Q8WWA1 233 aa13.35□□□□□ -0.27
SHMT2-229ENST00000557348 TFAP2BQ92481 460 aa13.35□□□□□ -0.27
SHMT2-229ENST00000557348 KRT35Q92764 455 aa13.35□□□□□ -0.27
SHMT2-229ENST00000557348 C18orf8Q96DM3 657 aa13.35□□□□□ -0.27
SHMT2-229ENST00000557348 RBM41Q96IZ5 413 aaKnown RBP13.35□□□□□ -0.27
SHMT2-229ENST00000557348 HEXIM2Q96MH2 286 aaKnown RBP13.35□□□□□ -0.27
SHMT2-229ENST00000557348 AP1M1Q9BXS5 423 aa13.35□□□□□ -0.27
SHMT2-229ENST00000557348 SDCBP2Q9H190 292 aa13.35□□□□□ -0.27
SHMT2-229ENST00000557348 NXF3Q9H4D5 531 aaKnown RBP13.35□□□□□ -0.27
SHMT2-229ENST00000557348 SYNCQ9H7C4 482 aa13.35□□□□□ -0.27
SHMT2-229ENST00000557348 EPB41L5Q9HCM4 733 aa13.35□□□□□ -0.27
SHMT2-229ENST00000557348 GDAP2Q9NXN4 497 aa13.35□□□□□ -0.27
SHMT2-229ENST00000557348 DDX56Q9NY93 547 aaKnown RBP13.35□□□□□ -0.27
SHMT2-229ENST00000557348 SRRDQ9UH36 339 aa13.35□□□□□ -0.27
SHMT2-229ENST00000557348 PCYOX1Q9UHG3 505 aa13.35□□□□□ -0.27
SHMT2-229ENST00000557348 IPPQ9Y573 584 aa13.35□□□□□ -0.27
SHMT2-229ENST00000557348 SQORQ9Y6N5 450 aa13.35□□□□□ -0.27
SHMT2-229ENST00000557348 DOCK3Q8IZD9 2030 aa13.35□□□□□ -0.27
SHMT2-229ENST00000557348 MYADML2A6NDP7 307 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 SIGLEC16A6NMB1 481 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 O00370 1275 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 CALCAP01258 141 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 PRKAR2AP13861 404 aaKnown RBP13.34□□□□□ -0.27
SHMT2-229ENST00000557348 RAP1GAPP47736 663 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 GABRB2P47870 512 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 PRMT2P55345 433 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 SLC7A5Q01650 507 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 FAM47CQ5HY64 1035 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 UBXN11Q5T124 520 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 C9orf57Q5W0N0 161 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 LCLAT1Q6UWP7 414 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 SYDE1Q6ZW31 735 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-229ENST00000557348 POLNQ7Z5Q5 900 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 FAM228AQ86W67 206 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 EXD1Q8NHP7 514 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 PXYLP1Q8TE99 480 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 SEC14L1Q92503 715 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 SEZ6LQ9BYH1 1024 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 ARHGAP39Q9C0H5 1083 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 SENP6Q9GZR1 1112 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-229ENST00000557348 ELOVL4Q9GZR5 314 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 PARP2Q9UGN5 583 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 CDY2AQ9Y6F7 541 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 SCN10AQ9Y5Y9 1956 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 SMIM28A0A1B0GU29 152 aa13.34□□□□□ -0.27
SHMT2-229ENST00000557348 TCRBV5S1A1TA0A578 114 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms