RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 CBFA2T2O43439 604 aa13.66□□□□□ -0.22
SHMT2-227ENST00000557269 SEC24AO95486 1093 aa13.66□□□□□ -0.22
SHMT2-227ENST00000557269 ADH1AP07327 375 aa13.66□□□□□ -0.22
SHMT2-227ENST00000557269 CPB1P15086 417 aa13.66□□□□□ -0.22
SHMT2-227ENST00000557269 PCSK1P29120 753 aa13.66□□□□□ -0.22
SHMT2-227ENST00000557269 ZNF132P52740 706 aa13.66□□□□□ -0.22
SHMT2-227ENST00000557269 JAM2P57087 298 aa13.66□□□□□ -0.22
SHMT2-227ENST00000557269 CREMQ03060 361 aa13.66□□□□□ -0.22
SHMT2-227ENST00000557269 GPR17Q13304 367 aa13.66□□□□□ -0.22
SHMT2-227ENST00000557269 RAPGEF1Q13905 1077 aa13.66□□□□□ -0.22
SHMT2-227ENST00000557269 KCNC3Q14003 757 aa13.66□□□□□ -0.22
SHMT2-227ENST00000557269 MDH1BQ5I0G3 518 aa13.66□□□□□ -0.22
SHMT2-227ENST00000557269 LLGL2Q6P1M3 1020 aa13.66□□□□□ -0.22
SHMT2-227ENST00000557269 ENOSF1Q7L5Y1 443 aa13.66□□□□□ -0.22
SHMT2-227ENST00000557269 MICALL1Q8N3F8 863 aa13.66□□□□□ -0.22
SHMT2-227ENST00000557269 TTC9BQ8N6N2 239 aa13.66□□□□□ -0.22
SHMT2-227ENST00000557269 ATAD1Q8NBU5 361 aa13.66□□□□□ -0.22
SHMT2-227ENST00000557269 RBBP8NLQ8NC74 664 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-227ENST00000557269 B3GALNT2Q8NCR0 500 aa13.66□□□□□ -0.22
SHMT2-227ENST00000557269 ZNF461Q8TAF7 563 aa13.66□□□□□ -0.22
SHMT2-227ENST00000557269 FEZF2Q8TBJ5 459 aa13.66□□□□□ -0.22
SHMT2-227ENST00000557269 JAKMIP2Q96AA8 810 aa13.66□□□□□ -0.22
SHMT2-227ENST00000557269 TMEM176AQ96HP8 235 aa13.66□□□□□ -0.22
SHMT2-227ENST00000557269 NT5C1AQ9BXI3 368 aa13.66□□□□□ -0.22
SHMT2-227ENST00000557269 OXCT2Q9BYC2 517 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-227ENST00000557269 B3GNT5Q9BYG0 378 aa13.66□□□□□ -0.22
SHMT2-227ENST00000557269 STK33Q9BYT3 514 aa13.66□□□□□ -0.22
SHMT2-227ENST00000557269 TTYH3Q9C0H2 523 aa13.66□□□□□ -0.22
SHMT2-227ENST00000557269 SLC27A5Q9Y2P5 690 aa13.66□□□□□ -0.22
SHMT2-227ENST00000557269 MYO9BQ13459 2157 aa13.66□□□□□ -0.22
SHMT2-227ENST00000557269 MTMR11A4FU01 709 aa13.65□□□□□ -0.22
SHMT2-227ENST00000557269 F8VZ95 297 aa13.65□□□□□ -0.22
SHMT2-227ENST00000557269 CLDN5O00501 218 aa13.65□□□□□ -0.22
SHMT2-227ENST00000557269 CYP26A1O43174 497 aa13.65□□□□□ -0.22
SHMT2-227ENST00000557269 GLP2RO95838 553 aa13.65□□□□□ -0.22
SHMT2-227ENST00000557269 KRT5P13647 590 aa13.65□□□□□ -0.22
SHMT2-227ENST00000557269 CCDC130P13994 396 aa13.65□□□□□ -0.22
SHMT2-227ENST00000557269 USP8P40818 1118 aa13.65□□□□□ -0.22
SHMT2-227ENST00000557269 YWHAEP62258 255 aaKnown RBP13.65□□□□□ -0.22
SHMT2-227ENST00000557269 TSPY1Q01534 308 aa13.65□□□□□ -0.22
SHMT2-227ENST00000557269 ADCY1Q08828 1119 aa13.65□□□□□ -0.22
SHMT2-227ENST00000557269 CCDC85BQ15834 202 aaPredicted RBP13.65□□□□□ -0.22
SHMT2-227ENST00000557269 PAQR9Q6ZVX9 377 aa13.65□□□□□ -0.22
SHMT2-227ENST00000557269 VSTM4Q8IW00 320 aa13.65□□□□□ -0.22
SHMT2-227ENST00000557269 FAM71AQ8IYT1 594 aa13.65□□□□□ -0.22
SHMT2-227ENST00000557269 MYCBPAPQ8TBZ2 947 aa13.65□□□□□ -0.22
SHMT2-227ENST00000557269 TFAP2BQ92481 460 aa13.65□□□□□ -0.22
SHMT2-227ENST00000557269 BAP1Q92560 729 aa13.65□□□□□ -0.22
SHMT2-227ENST00000557269 MYLPFQ96A32 169 aa13.65□□□□□ -0.22
SHMT2-227ENST00000557269 PCED1BQ96HM7 432 aa13.65□□□□□ -0.22
SHMT2-227ENST00000557269 HEXIM2Q96MH2 286 aaKnown RBP13.65□□□□□ -0.22
SHMT2-227ENST00000557269 FAM49BQ9NUQ9 324 aa13.65□□□□□ -0.22
SHMT2-227ENST00000557269 HCFC2Q9Y5Z7 792 aa13.65□□□□□ -0.22
SHMT2-227ENST00000557269 PRRC2BQ5JSZ5 2229 aaKnown RBP13.64□□□□□ -0.23
SHMT2-227ENST00000557269 SOAT2O75908 522 aa13.64□□□□□ -0.23
SHMT2-227ENST00000557269 FOSL2P15408 326 aa13.64□□□□□ -0.23
SHMT2-227ENST00000557269 TRIM21P19474 475 aaKnown RBP13.64□□□□□ -0.23
SHMT2-227ENST00000557269 RFX1P22670 979 aa13.64□□□□□ -0.23
SHMT2-227ENST00000557269 SSTR3P32745 418 aaPredicted RBP13.64□□□□□ -0.23
SHMT2-227ENST00000557269 CLCN1P35523 988 aa13.64□□□□□ -0.23
SHMT2-227ENST00000557269 CACNA2D1P54289 1103 aa13.64□□□□□ -0.23
SHMT2-227ENST00000557269 CYP27A1Q02318 531 aa13.64□□□□□ -0.23
SHMT2-227ENST00000557269 DUSP4Q13115 394 aa13.64□□□□□ -0.23
SHMT2-227ENST00000557269 DCP1BQ8IZD4 617 aaKnown RBP13.64□□□□□ -0.23
SHMT2-227ENST00000557269 FUKQ8N0W3 1084 aa13.64□□□□□ -0.23
SHMT2-227ENST00000557269 TTC39CQ8N584 583 aa13.64□□□□□ -0.23
SHMT2-227ENST00000557269 CPLX3Q8WVH0 158 aa13.64□□□□□ -0.23
SHMT2-227ENST00000557269 TNIP3Q96KP6 325 aa13.64□□□□□ -0.23
SHMT2-227ENST00000557269 FAM81BQ96LP2 452 aa13.64□□□□□ -0.23
SHMT2-227ENST00000557269 ZNF518BQ9C0D4 1074 aa13.64□□□□□ -0.23
SHMT2-227ENST00000557269 FAM124BQ9H5Z6 455 aaPredicted RBP13.64□□□□□ -0.23
SHMT2-227ENST00000557269 TMEM30AQ9NV96 361 aa13.64□□□□□ -0.23
SHMT2-227ENST00000557269 ABI2Q9NYB9 513 aaPredicted RBP13.64□□□□□ -0.23
SHMT2-227ENST00000557269 CEP72Q9P209 647 aa13.64□□□□□ -0.23
SHMT2-227ENST00000557269 AFF4Q9UHB7 1163 aaKnown RBP13.64□□□□□ -0.23
SHMT2-227ENST00000557269 ITIH6Q6UXX5 1313 aa13.64□□□□□ -0.23
SHMT2-227ENST00000557269 GOLGA6L3A6NEY3 463 aa13.63□□□□□ -0.23
SHMT2-227ENST00000557269 GFPT2O94808 682 aa13.63□□□□□ -0.23
SHMT2-227ENST00000557269 ADCY5O95622 1261 aa13.63□□□□□ -0.23
SHMT2-227ENST00000557269 GLUD1P00367 558 aa13.63□□□□□ -0.23
SHMT2-227ENST00000557269 GYPCP04921 128 aa13.63□□□□□ -0.23
SHMT2-227ENST00000557269 TPM3P06753 285 aa13.63□□□□□ -0.23
SHMT2-227ENST00000557269 CFHP08603 1231 aa13.63□□□□□ -0.23
SHMT2-227ENST00000557269 ATF2P15336 505 aa13.63□□□□□ -0.23
SHMT2-227ENST00000557269 CYP2F1P24903 491 aa13.63□□□□□ -0.23
SHMT2-227ENST00000557269 BRD2P25440 801 aaKnown RBP13.63□□□□□ -0.23
SHMT2-227ENST00000557269 GPR15P49685 360 aa13.63□□□□□ -0.23
SHMT2-227ENST00000557269 ADAM15Q13444 863 aa13.63□□□□□ -0.23
SHMT2-227ENST00000557269 PPP1R26Q5T8A7 1209 aaPredicted RBP13.63□□□□□ -0.23
SHMT2-227ENST00000557269 E4F1Q66K89 784 aaPredicted RBP13.63□□□□□ -0.23
SHMT2-227ENST00000557269 TPGS2Q68CL5 300 aa13.63□□□□□ -0.23
SHMT2-227ENST00000557269 SPECC1LQ69YQ0 1117 aa13.63□□□□□ -0.23
SHMT2-227ENST00000557269 SLC47A2Q86VL8 602 aa13.63□□□□□ -0.23
SHMT2-227ENST00000557269 EFHBQ8N7U6 833 aa13.63□□□□□ -0.23
SHMT2-227ENST00000557269 KREMEN2Q8NCW0 462 aa13.63□□□□□ -0.23
SHMT2-227ENST00000557269 SLC2A14Q8TDB8 520 aa13.63□□□□□ -0.23
SHMT2-227ENST00000557269 CYFIP2Q96F07 1278 aa13.63□□□□□ -0.23
SHMT2-227ENST00000557269 CDCA3Q99618 268 aaPredicted RBP13.63□□□□□ -0.23
SHMT2-227ENST00000557269 GRPEL1Q9HAV7 217 aa13.63□□□□□ -0.23
SHMT2-227ENST00000557269 CYP4F11Q9HBI6 524 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms