RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 TRIM21P19474 475 aaKnown RBP12.22□□□□□ -0.45
CCDC88C-212ENST00000556767 HOXA9P31269 272 aa12.22□□□□□ -0.45
CCDC88C-212ENST00000556767 SSTR3P32745 418 aaPredicted RBP12.22□□□□□ -0.45
CCDC88C-212ENST00000556767 TUFMP49411 452 aaKnown RBP12.22□□□□□ -0.45
CCDC88C-212ENST00000556767 NDST1P52848 882 aa12.22□□□□□ -0.45
CCDC88C-212ENST00000556767 EPHB3P54753 998 aa12.22□□□□□ -0.45
CCDC88C-212ENST00000556767 MYL5Q02045 173 aa12.22□□□□□ -0.45
CCDC88C-212ENST00000556767 ORC1Q13415 861 aa12.22□□□□□ -0.45
CCDC88C-212ENST00000556767 MAPRE1Q15691 268 aaKnown RBP12.22□□□□□ -0.45
CCDC88C-212ENST00000556767 TAF12Q16514 161 aa12.22□□□□□ -0.45
CCDC88C-212ENST00000556767 MAN2A1Q16706 1144 aa12.22□□□□□ -0.45
CCDC88C-212ENST00000556767 MDH1BQ5I0G3 518 aa12.22□□□□□ -0.45
CCDC88C-212ENST00000556767 IQCEQ6IPM2 695 aa12.22□□□□□ -0.45
CCDC88C-212ENST00000556767 CYP26C1Q6V0L0 522 aa12.22□□□□□ -0.45
CCDC88C-212ENST00000556767 C4orf50Q6ZRC1 276 aa12.22□□□□□ -0.45
CCDC88C-212ENST00000556767 RTL10Q7L3V2 364 aa12.22□□□□□ -0.45
CCDC88C-212ENST00000556767 GRASPQ7Z6J2 395 aaPredicted RBP12.22□□□□□ -0.45
CCDC88C-212ENST00000556767 TTC9BQ8N6N2 239 aa12.22□□□□□ -0.45
CCDC88C-212ENST00000556767 MYLPFQ96A32 169 aa12.22□□□□□ -0.45
CCDC88C-212ENST00000556767 TNIP3Q96KP6 325 aa12.22□□□□□ -0.45
CCDC88C-212ENST00000556767 ZNF512Q96ME7 567 aaPredicted RBP12.22□□□□□ -0.45
CCDC88C-212ENST00000556767 NECAB3Q96P71 396 aaPredicted RBP12.22□□□□□ -0.45
CCDC88C-212ENST00000556767 LPIN3Q9BQK8 851 aa12.22□□□□□ -0.45
CCDC88C-212ENST00000556767 DNAI2Q9GZS0 605 aa12.22□□□□□ -0.45
CCDC88C-212ENST00000556767 CRISPLD1Q9H336 500 aa12.22□□□□□ -0.45
CCDC88C-212ENST00000556767 CRTAC1Q9NQ79 661 aa12.22□□□□□ -0.45
CCDC88C-212ENST00000556767 FANCLQ9NW38 375 aa12.22□□□□□ -0.45
CCDC88C-212ENST00000556767 NME7Q9Y5B8 376 aa12.22□□□□□ -0.45
CCDC88C-212ENST00000556767 TPM2P07951 284 aa12.21□□□□□ -0.45
CCDC88C-212ENST00000556767 HAPLN1P10915 354 aaPredicted RBP12.21□□□□□ -0.45
CCDC88C-212ENST00000556767 PTPN2P17706 415 aa12.21□□□□□ -0.45
CCDC88C-212ENST00000556767 CDK11BP21127 795 aaKnown RBP12.21□□□□□ -0.45
CCDC88C-212ENST00000556767 CYP2F1P24903 491 aa12.21□□□□□ -0.45
CCDC88C-212ENST00000556767 EEF1GP26641 437 aaKnown RBP12.21□□□□□ -0.45
CCDC88C-212ENST00000556767 NTHL1P78549 312 aa12.21□□□□□ -0.45
CCDC88C-212ENST00000556767 VEPH1Q14D04 833 aa12.21□□□□□ -0.45
CCDC88C-212ENST00000556767 FAM171BQ6P995 826 aa12.21□□□□□ -0.45
CCDC88C-212ENST00000556767 ACOT1Q86TX2 421 aa12.21□□□□□ -0.45
CCDC88C-212ENST00000556767 SCN4BQ8IWT1 228 aa12.21□□□□□ -0.45
CCDC88C-212ENST00000556767 PPM1KQ8N3J5 372 aa12.21□□□□□ -0.45
CCDC88C-212ENST00000556767 AOPEPQ8N6M6 819 aa12.21□□□□□ -0.45
CCDC88C-212ENST00000556767 B3GALNT2Q8NCR0 500 aa12.21□□□□□ -0.45
CCDC88C-212ENST00000556767 EHBP1Q8NDI1 1231 aa12.21□□□□□ -0.45
CCDC88C-212ENST00000556767 ANKRD20A12PQ8NF67 263 aa12.21□□□□□ -0.45
CCDC88C-212ENST00000556767 MYCBPAPQ8TBZ2 947 aa12.21□□□□□ -0.45
CCDC88C-212ENST00000556767 PCED1BQ96HM7 432 aa12.21□□□□□ -0.45
CCDC88C-212ENST00000556767 CORO1BQ9BR76 489 aa12.21□□□□□ -0.45
CCDC88C-212ENST00000556767 TUBGCP2Q9BSJ2 902 aa12.21□□□□□ -0.45
CCDC88C-212ENST00000556767 CRACR2AQ9BSW2 395 aa12.21□□□□□ -0.45
CCDC88C-212ENST00000556767 MED10Q9BTT4 135 aa12.21□□□□□ -0.45
CCDC88C-212ENST00000556767 PHF7Q9BWX1 381 aaPredicted RBP12.21□□□□□ -0.45
CCDC88C-212ENST00000556767 BCO2Q9BYV7 579 aa12.21□□□□□ -0.45
CCDC88C-212ENST00000556767 RHOBTB2Q9BYZ6 727 aa12.21□□□□□ -0.45
CCDC88C-212ENST00000556767 INTS2Q9H0H0 1204 aaKnown RBP12.21□□□□□ -0.45
CCDC88C-212ENST00000556767 WDR6Q9NNW5 1121 aaKnown RBP12.21□□□□□ -0.45
CCDC88C-212ENST00000556767 HCFC1R1Q9NWW0 138 aa12.21□□□□□ -0.45
CCDC88C-212ENST00000556767 TAB2Q9NYJ8 693 aa12.21□□□□□ -0.45
CCDC88C-212ENST00000556767 HMGXB4Q9UGU5 601 aa12.21□□□□□ -0.45
CCDC88C-212ENST00000556767 TRANK1O15050 2925 aa12.21□□□□□ -0.45
CCDC88C-212ENST00000556767 CLUHO75153 1309 aa12.2□□□□□ -0.46
CCDC88C-212ENST00000556767 C2orf16Q68DN1 1984 aa12.2□□□□□ -0.46
CCDC88C-212ENST00000556767 BECN2A8MW95 431 aa12.2□□□□□ -0.46
CCDC88C-212ENST00000556767 PMM2O15305 246 aa12.2□□□□□ -0.46
CCDC88C-212ENST00000556767 MYL4P12829 197 aa12.2□□□□□ -0.46
CCDC88C-212ENST00000556767 BDNFP23560 247 aa12.2□□□□□ -0.46
CCDC88C-212ENST00000556767 FSHRP23945 695 aa12.2□□□□□ -0.46
CCDC88C-212ENST00000556767 TBXAS1P24557 533 aaPredicted RBP12.2□□□□□ -0.46
CCDC88C-212ENST00000556767 GBP2P32456 591 aaPredicted RBP12.2□□□□□ -0.46
CCDC88C-212ENST00000556767 GRIK1P39086 918 aa12.2□□□□□ -0.46
CCDC88C-212ENST00000556767 GPR15P49685 360 aa12.2□□□□□ -0.46
CCDC88C-212ENST00000556767 ZNF165P49910 485 aa12.2□□□□□ -0.46
CCDC88C-212ENST00000556767 YWHAEP62258 255 aaKnown RBP12.2□□□□□ -0.46
CCDC88C-212ENST00000556767 RPL10AP62906 217 aaKnown RBP12.2□□□□□ -0.46
CCDC88C-212ENST00000556767 CUL2Q13617 745 aa12.2□□□□□ -0.46
CCDC88C-212ENST00000556767 ZSCAN23Q3MJ62 389 aa12.2□□□□□ -0.46
CCDC88C-212ENST00000556767 PABPC1LQ4VXU2 614 aaKnown RBP12.2□□□□□ -0.46
CCDC88C-212ENST00000556767 VWA3BQ502W6 1294 aa12.2□□□□□ -0.46
CCDC88C-212ENST00000556767 ZNF394Q53GI3 561 aa12.2□□□□□ -0.46
CCDC88C-212ENST00000556767 TCP11X2Q5H9J9 407 aa12.2□□□□□ -0.46
CCDC88C-212ENST00000556767 CYP4A22Q5TCH4 519 aa12.2□□□□□ -0.46
CCDC88C-212ENST00000556767 SDHAF4Q5VUM1 108 aa12.2□□□□□ -0.46
CCDC88C-212ENST00000556767 GBP6Q6ZN66 633 aa12.2□□□□□ -0.46
CCDC88C-212ENST00000556767 GET4Q7L5D6 327 aaPredicted RBP12.2□□□□□ -0.46
CCDC88C-212ENST00000556767 ITIH5Q86UX2 942 aa12.2□□□□□ -0.46
CCDC88C-212ENST00000556767 UNC93AQ86WB7 457 aa12.2□□□□□ -0.46
CCDC88C-212ENST00000556767 ADHFE1Q8IWW8 467 aa12.2□□□□□ -0.46
CCDC88C-212ENST00000556767 TTC39CQ8N584 583 aa12.2□□□□□ -0.46
CCDC88C-212ENST00000556767 GPR152Q8TDT2 470 aa12.2□□□□□ -0.46
CCDC88C-212ENST00000556767 GIPC2Q8TF65 315 aa12.2□□□□□ -0.46
CCDC88C-212ENST00000556767 UHRF1Q96T88 793 aaPredicted RBP12.2□□□□□ -0.46
CCDC88C-212ENST00000556767 PKMYT1Q99640 499 aa12.2□□□□□ -0.46
CCDC88C-212ENST00000556767 ARID3AQ99856 593 aa12.2□□□□□ -0.46
CCDC88C-212ENST00000556767 NT5C1AQ9BXI3 368 aa12.2□□□□□ -0.46
CCDC88C-212ENST00000556767 NDST4Q9H3R1 872 aa12.2□□□□□ -0.46
CCDC88C-212ENST00000556767 CISHQ9NSE2 258 aa12.2□□□□□ -0.46
CCDC88C-212ENST00000556767 GCNT4Q9P109 453 aa12.2□□□□□ -0.46
CCDC88C-212ENST00000556767 CEP72Q9P209 647 aa12.2□□□□□ -0.46
CCDC88C-212ENST00000556767 DNMT3BQ9UBC3 853 aaKnown RBP12.2□□□□□ -0.46
CCDC88C-212ENST00000556767 HSFX1Q9UBD0 423 aa12.2□□□□□ -0.46
CCDC88C-212ENST00000556767 PRKAG3Q9UGI9 489 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms