RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 WNT16Q9UBV4 365 aa22.08■■□□□ 1.13
CCDC88C-210ENST00000555995 SLC16A3O15427 465 aaKnown RBP22.07■■□□□ 1.12
CCDC88C-210ENST00000555995 CSH1P0DML2 217 aa22.07■■□□□ 1.12
CCDC88C-210ENST00000555995 CSH2P0DML3 217 aa22.07■■□□□ 1.12
CCDC88C-210ENST00000555995 ACAT1P24752 427 aaKnown RBP22.07■■□□□ 1.12
CCDC88C-210ENST00000555995 GTF2H1P32780 548 aa22.07■■□□□ 1.12
CCDC88C-210ENST00000555995 GNL1P36915 607 aaPredicted RBP22.07■■□□□ 1.12
CCDC88C-210ENST00000555995 FKBP3Q00688 224 aaKnown RBP22.07■■□□□ 1.12
CCDC88C-210ENST00000555995 PARM1Q6UWI2 310 aa22.07■■□□□ 1.12
CCDC88C-210ENST00000555995 TMC8Q8IU68 726 aa22.07■■□□□ 1.12
CCDC88C-210ENST00000555995 HS6ST3Q8IZP7 471 aa22.07■■□□□ 1.12
CCDC88C-210ENST00000555995 CCDC150Q8NCX0 1101 aa22.07■■□□□ 1.12
CCDC88C-210ENST00000555995 RSAD2Q8WXG1 361 aa22.07■■□□□ 1.12
CCDC88C-210ENST00000555995 FGF14Q92915 247 aa22.07■■□□□ 1.12
CCDC88C-210ENST00000555995 E2F7Q96AV8 911 aa22.07■■□□□ 1.12
CCDC88C-210ENST00000555995 PKMYT1Q99640 499 aa22.07■■□□□ 1.12
CCDC88C-210ENST00000555995 PRRX2Q99811 253 aa22.07■■□□□ 1.12
CCDC88C-210ENST00000555995 NXF1Q9UBU9 619 aaKnown RBP22.07■■□□□ 1.12
CCDC88C-210ENST00000555995 GTF3C4Q9UKN8 822 aa22.07■■□□□ 1.12
CCDC88C-210ENST00000555995 GADD45BO75293 160 aaPredicted RBP22.06■■□□□ 1.12
CCDC88C-210ENST00000555995 ATF6P18850 670 aa22.06■■□□□ 1.12
CCDC88C-210ENST00000555995 PIK3CAP42336 1068 aa22.06■■□□□ 1.12
CCDC88C-210ENST00000555995 MAGEA11P43364 429 aa22.06■■□□□ 1.12
CCDC88C-210ENST00000555995 DLG4P78352 724 aa22.06■■□□□ 1.12
CCDC88C-210ENST00000555995 PFKPQ01813 784 aa22.06■■□□□ 1.12
CCDC88C-210ENST00000555995 FAM171BQ6P995 826 aa22.06■■□□□ 1.12
CCDC88C-210ENST00000555995 VSTM1Q6UX27 236 aa22.06■■□□□ 1.12
CCDC88C-210ENST00000555995 SV2AQ7L0J3 742 aa22.06■■□□□ 1.12
CCDC88C-210ENST00000555995 ADSSL1Q8N142 457 aa22.06■■□□□ 1.12
CCDC88C-210ENST00000555995 OR6B3Q8NGW1 331 aa22.06■■□□□ 1.12
CCDC88C-210ENST00000555995 ELSPBP1Q96BH3 223 aa22.06■■□□□ 1.12
CCDC88C-210ENST00000555995 TCEAL4Q96EI5 215 aa22.06■■□□□ 1.12
CCDC88C-210ENST00000555995 DHTKD1Q96HY7 919 aaPredicted RBP22.06■■□□□ 1.12
CCDC88C-210ENST00000555995 PI4K2AQ9BTU6 479 aa22.06■■□□□ 1.12
CCDC88C-210ENST00000555995 LRRC3Q9BY71 257 aa22.06■■□□□ 1.12
CCDC88C-210ENST00000555995 DNAI2Q9GZS0 605 aa22.06■■□□□ 1.12
CCDC88C-210ENST00000555995 SLITRK6Q9H5Y7 841 aa22.06■■□□□ 1.12
CCDC88C-210ENST00000555995 ZFP14Q9HCL3 533 aa22.06■■□□□ 1.12
CCDC88C-210ENST00000555995 TMLHEQ9NVH6 421 aa22.06■■□□□ 1.12
CCDC88C-210ENST00000555995 MAGEC2Q9UBF1 373 aaPredicted RBP22.06■■□□□ 1.12
CCDC88C-210ENST00000555995 UXTQ9UBK9 157 aaPredicted RBP22.06■■□□□ 1.12
CCDC88C-210ENST00000555995 NUP210Q8TEM1 1887 aaPredicted RBP22.06■■□□□ 1.12
CCDC88C-210ENST00000555995 PTPRDP23468 1912 aa22.06■■□□□ 1.12
CCDC88C-210ENST00000555995 CCR2P41597 374 aa22.05■■□□□ 1.12
CCDC88C-210ENST00000555995 SCARA3Q6AZY7 606 aa22.05■■□□□ 1.12
CCDC88C-210ENST00000555995 FOXR2Q6PJQ5 311 aa22.05■■□□□ 1.12
CCDC88C-210ENST00000555995 TRIML1Q8N9V2 468 aa22.05■■□□□ 1.12
CCDC88C-210ENST00000555995 SHKBP1Q8TBC3 707 aa22.05■■□□□ 1.12
CCDC88C-210ENST00000555995 SMARCD2Q92925 531 aa22.05■■□□□ 1.12
CCDC88C-210ENST00000555995 TRPV4Q9HBA0 871 aa22.05■■□□□ 1.12
CCDC88C-210ENST00000555995 TMEM8AQ9HCN3 771 aa22.05■■□□□ 1.12
CCDC88C-210ENST00000555995 EHD2Q9NZN4 543 aa22.05■■□□□ 1.12
CCDC88C-210ENST00000555995 ATP8B3O60423 1300 aa22.05■■□□□ 1.12
CCDC88C-210ENST00000555995 A0A1W2PRU2 124 aa22.04■■□□□ 1.12
CCDC88C-210ENST00000555995 BICDL2A1A5D9 508 aa22.04■■□□□ 1.12
CCDC88C-210ENST00000555995 A8MXQ7 604 aa22.04■■□□□ 1.12
CCDC88C-210ENST00000555995 SOAT2O75908 522 aa22.04■■□□□ 1.12
CCDC88C-210ENST00000555995 VNN1O95497 513 aa22.04■■□□□ 1.12
CCDC88C-210ENST00000555995 CCNE1P24864 410 aa22.04■■□□□ 1.12
CCDC88C-210ENST00000555995 GABRR2P28476 465 aa22.04■■□□□ 1.12
CCDC88C-210ENST00000555995 NUBP1P53384 320 aa22.04■■□□□ 1.12
CCDC88C-210ENST00000555995 MCCD1P59942 119 aaPredicted RBP22.04■■□□□ 1.12
CCDC88C-210ENST00000555995 ZC3H3Q8IXZ2 948 aaKnown RBP22.04■■□□□ 1.12
CCDC88C-210ENST00000555995 MYCBPAPQ8TBZ2 947 aa22.04■■□□□ 1.12
CCDC88C-210ENST00000555995 DEPDC1BQ8WUY9 529 aa22.04■■□□□ 1.12
CCDC88C-210ENST00000555995 TNIP3Q96KP6 325 aa22.04■■□□□ 1.12
CCDC88C-210ENST00000555995 ASB16Q96NS5 453 aa22.04■■□□□ 1.12
CCDC88C-210ENST00000555995 KXD1Q9BQD3 176 aa22.04■■□□□ 1.12
CCDC88C-210ENST00000555995 LPIN3Q9BQK8 851 aa22.04■■□□□ 1.12
CCDC88C-210ENST00000555995 SMOC2Q9H3U7 446 aa22.04■■□□□ 1.12
CCDC88C-210ENST00000555995 MAN1B1Q9UKM7 699 aa22.04■■□□□ 1.12
CCDC88C-210ENST00000555995 KMT2EQ8IZD2 1858 aa22.04■■□□□ 1.12
CCDC88C-210ENST00000555995 TRIOO75962 3097 aa22.04■■□□□ 1.12
CCDC88C-210ENST00000555995 SOBPA7XYQ1 873 aa22.03■■□□□ 1.12
CCDC88C-210ENST00000555995 NARSO43776 548 aaKnown RBP22.03■■□□□ 1.12
CCDC88C-210ENST00000555995 MOSPD3O75425 235 aa22.03■■□□□ 1.12
CCDC88C-210ENST00000555995 ASS1P00966 412 aaKnown RBP22.03■■□□□ 1.12
CCDC88C-210ENST00000555995 HLA-DRAP01903 254 aa22.03■■□□□ 1.12
CCDC88C-210ENST00000555995 RFX1P22670 979 aa22.03■■□□□ 1.12
CCDC88C-210ENST00000555995 DDX6P26196 483 aaKnown RBP eCLIP22.03■■□□□ 1.12
CCDC88C-210ENST00000555995 PSMC1P62191 440 aaKnown RBP22.03■■□□□ 1.12
CCDC88C-210ENST00000555995 TEAD2Q15562 447 aa22.03■■□□□ 1.12
CCDC88C-210ENST00000555995 KRT39Q6A163 491 aa22.03■■□□□ 1.12
CCDC88C-210ENST00000555995 ERCC4Q92889 916 aaPredicted RBP22.03■■□□□ 1.12
CCDC88C-210ENST00000555995 MYLPFQ96A32 169 aa22.03■■□□□ 1.12
CCDC88C-210ENST00000555995 FAXDC2Q96IV6 333 aa22.03■■□□□ 1.12
CCDC88C-210ENST00000555995 MRPL45Q9BRJ2 306 aaKnown RBP22.03■■□□□ 1.12
CCDC88C-210ENST00000555995 ATXN3LQ9H3M9 355 aa22.03■■□□□ 1.12
CCDC88C-210ENST00000555995 DENND4CQ5VZ89 1909 aa22.03■■□□□ 1.12
CCDC88C-210ENST00000555995 ZNF318Q5VUA4 2279 aa22.03■■□□□ 1.12
CCDC88C-210ENST00000555995 MYBPHLA2RUH7 354 aa22.02■■□□□ 1.12
CCDC88C-210ENST00000555995 TRIM66O15016 1216 aa22.02■■□□□ 1.12
CCDC88C-210ENST00000555995 CFHP08603 1231 aa22.02■■□□□ 1.12
CCDC88C-210ENST00000555995 PDGFRBP09619 1106 aa22.02■■□□□ 1.12
CCDC88C-210ENST00000555995 TRIM49P0CI25 452 aa22.02■■□□□ 1.12
CCDC88C-210ENST00000555995 TRIM49CP0CI26 452 aa22.02■■□□□ 1.12
CCDC88C-210ENST00000555995 CYP2F1P24903 491 aa22.02■■□□□ 1.12
CCDC88C-210ENST00000555995 LMO2P25791 158 aa22.02■■□□□ 1.12
CCDC88C-210ENST00000555995 ANXA13P27216 316 aa22.02■■□□□ 1.12
CCDC88C-210ENST00000555995 GCLMP48507 274 aa22.02■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms