RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 TRIM49P0CI25 452 aa21.95■■□□□ 1.1
VTI1B-205ENST00000555543 TRIM49CP0CI26 452 aa21.95■■□□□ 1.1
VTI1B-205ENST00000555543 CYP2F1P24903 491 aa21.95■■□□□ 1.1
VTI1B-205ENST00000555543 ATICP31939 592 aa21.95■■□□□ 1.1
VTI1B-205ENST00000555543 AP3M2P53677 418 aa21.95■■□□□ 1.1
VTI1B-205ENST00000555543 TNNC1P63316 161 aa21.95■■□□□ 1.1
VTI1B-205ENST00000555543 EDRF1Q3B7T1 1238 aa21.95■■□□□ 1.1
VTI1B-205ENST00000555543 ZACNQ401N2 412 aa21.95■■□□□ 1.1
VTI1B-205ENST00000555543 COBLL1Q53SF7 1204 aa21.95■■□□□ 1.1
VTI1B-205ENST00000555543 STXBP5Q5T5C0 1151 aa21.95■■□□□ 1.1
VTI1B-205ENST00000555543 TANGO2Q6ICL3 276 aa21.95■■□□□ 1.1
VTI1B-205ENST00000555543 FAM186BQ8IYM0 893 aa21.95■■□□□ 1.1
VTI1B-205ENST00000555543 SIX5Q8N196 739 aa21.95■■□□□ 1.1
VTI1B-205ENST00000555543 FAM200AQ8TCP9 573 aa21.95■■□□□ 1.1
VTI1B-205ENST00000555543 SYAP1Q96A49 352 aaPredicted RBP21.95■■□□□ 1.1
VTI1B-205ENST00000555543 VRTNQ9H8Y1 702 aa21.95■■□□□ 1.1
VTI1B-205ENST00000555543 SLC2A4RGQ9NR83 387 aa21.95■■□□□ 1.1
VTI1B-205ENST00000555543 NXF1Q9UBU9 619 aaKnown RBP21.95■■□□□ 1.1
VTI1B-205ENST00000555543 KRBA1A5PL33 1030 aa21.94■■□□□ 1.1
VTI1B-205ENST00000555543 TACC1O75410 805 aa21.94■■□□□ 1.1
VTI1B-205ENST00000555543 ECI2O75521 394 aa21.94■■□□□ 1.1
VTI1B-205ENST00000555543 PDGFRBP09619 1106 aa21.94■■□□□ 1.1
VTI1B-205ENST00000555543 ANP32AP39687 249 aaKnown RBP21.94■■□□□ 1.1
VTI1B-205ENST00000555543 VAMP7P51809 220 aa21.94■■□□□ 1.1
VTI1B-205ENST00000555543 GPC5P78333 572 aa21.94■■□□□ 1.1
VTI1B-205ENST00000555543 ADAM9Q13443 819 aa21.94■■□□□ 1.1
VTI1B-205ENST00000555543 VEPH1Q14D04 833 aa21.94■■□□□ 1.1
VTI1B-205ENST00000555543 ZNF699Q32M78 642 aa21.94■■□□□ 1.1
VTI1B-205ENST00000555543 SDHAF4Q5VUM1 108 aa21.94■■□□□ 1.1
VTI1B-205ENST00000555543 CWF19L1Q69YN2 538 aaKnown RBP21.94■■□□□ 1.1
VTI1B-205ENST00000555543 FAM171BQ6P995 826 aa21.94■■□□□ 1.1
VTI1B-205ENST00000555543 SV2AQ7L0J3 742 aa21.94■■□□□ 1.1
VTI1B-205ENST00000555543 ITIH5Q86UX2 942 aa21.94■■□□□ 1.1
VTI1B-205ENST00000555543 ELOA2Q8IYF1 753 aaPredicted RBP21.94■■□□□ 1.1
VTI1B-205ENST00000555543 ASB16Q96NS5 453 aa21.94■■□□□ 1.1
VTI1B-205ENST00000555543 SMYD3Q9H7B4 428 aa21.94■■□□□ 1.1
VTI1B-205ENST00000555543 IL21Q9HBE4 155 aa21.94■■□□□ 1.1
VTI1B-205ENST00000555543 ABCB6Q9NP58 842 aa21.94■■□□□ 1.1
VTI1B-205ENST00000555543 WNT16Q9UBV4 365 aa21.94■■□□□ 1.1
VTI1B-205ENST00000555543 CDH9Q9ULB4 789 aa21.94■■□□□ 1.1
VTI1B-205ENST00000555543 CA14Q9ULX7 337 aa21.94■■□□□ 1.1
VTI1B-205ENST00000555543 NCANO14594 1321 aa21.94■■□□□ 1.1
VTI1B-205ENST00000555543 NPR3P17342 541 aa21.93■■□□□ 1.1
VTI1B-205ENST00000555543 RPL13P26373 211 aaKnown RBP21.93■■□□□ 1.1
VTI1B-205ENST00000555543 GABRR2P28476 465 aa21.93■■□□□ 1.1
VTI1B-205ENST00000555543 PMS1P54277 932 aaKnown RBP21.93■■□□□ 1.1
VTI1B-205ENST00000555543 COL4A3Q01955 1670 aa21.93■■□□□ 1.1
VTI1B-205ENST00000555543 CFAP221Q4G0U5 840 aa21.93■■□□□ 1.1
VTI1B-205ENST00000555543 IER5LQ5T953 404 aa21.93■■□□□ 1.1
VTI1B-205ENST00000555543 SCARA5Q6ZMJ2 495 aa21.93■■□□□ 1.1
VTI1B-205ENST00000555543 INTS8Q75QN2 995 aaKnown RBP21.93■■□□□ 1.1
VTI1B-205ENST00000555543 MYLPFQ96A32 169 aa21.93■■□□□ 1.1
VTI1B-205ENST00000555543 MKNK1Q9BUB5 465 aa21.93■■□□□ 1.1
VTI1B-205ENST00000555543 HOOK1Q9UJC3 728 aaKnown RBP21.93■■□□□ 1.1
VTI1B-205ENST00000555543 MAN1B1Q9UKM7 699 aa21.93■■□□□ 1.1
VTI1B-205ENST00000555543 IKBKBO14920 756 aa21.92■■□□□ 1.1
VTI1B-205ENST00000555543 HMGA1P17096 107 aaKnown RBP21.92■■□□□ 1.1
VTI1B-205ENST00000555543 PSMC2P35998 433 aaKnown RBP21.92■■□□□ 1.1
VTI1B-205ENST00000555543 GNL1P36915 607 aaPredicted RBP21.92■■□□□ 1.1
VTI1B-205ENST00000555543 RAP1GAPP47736 663 aa21.92■■□□□ 1.1
VTI1B-205ENST00000555543 PPP3CAQ08209 521 aa21.92■■□□□ 1.1
VTI1B-205ENST00000555543 DDR2Q16832 855 aa21.92■■□□□ 1.1
VTI1B-205ENST00000555543 ISM2Q6H9L7 571 aa21.92■■□□□ 1.1
VTI1B-205ENST00000555543 SPATA2LQ8IUW3 424 aaPredicted RBP21.92■■□□□ 1.1
VTI1B-205ENST00000555543 ADSSL1Q8N142 457 aa21.92■■□□□ 1.1
VTI1B-205ENST00000555543 OR6B3Q8NGW1 331 aa21.92■■□□□ 1.1
VTI1B-205ENST00000555543 ZSCAN18Q8TBC5 510 aaPredicted RBP21.92■■□□□ 1.1
VTI1B-205ENST00000555543 SMARCD2Q92925 531 aa21.92■■□□□ 1.1
VTI1B-205ENST00000555543 ELSPBP1Q96BH3 223 aa21.92■■□□□ 1.1
VTI1B-205ENST00000555543 SNX25Q9H3E2 840 aa21.92■■□□□ 1.1
VTI1B-205ENST00000555543 MFSD1Q9H3U5 465 aa21.92■■□□□ 1.1
VTI1B-205ENST00000555543 DPEP3Q9H4B8 488 aa21.92■■□□□ 1.1
VTI1B-205ENST00000555543 SLITRK6Q9H5Y7 841 aa21.92■■□□□ 1.1
VTI1B-205ENST00000555543 TRIM49BA6NDI0 452 aa21.91■■□□□ 1.1
VTI1B-205ENST00000555543 CLSTN1O94985 981 aa21.91■■□□□ 1.1
VTI1B-205ENST00000555543 HLA-DRAP01903 254 aa21.91■■□□□ 1.1
VTI1B-205ENST00000555543 AVPR2P30518 371 aa21.91■■□□□ 1.1
VTI1B-205ENST00000555543 VIPR2P41587 438 aa21.91■■□□□ 1.1
VTI1B-205ENST00000555543 GCLMP48507 274 aa21.91■■□□□ 1.1
VTI1B-205ENST00000555543 CDH8P55286 799 aa21.91■■□□□ 1.1
VTI1B-205ENST00000555543 CYP4F8P98187 520 aa21.91■■□□□ 1.1
VTI1B-205ENST00000555543 ZNF667Q5HYK9 610 aa21.91■■□□□ 1.1
VTI1B-205ENST00000555543 MDH1BQ5I0G3 518 aa21.91■■□□□ 1.1
VTI1B-205ENST00000555543 ANKRD40Q6AI12 368 aa21.91■■□□□ 1.1
VTI1B-205ENST00000555543 TMEM105Q8N8V8 129 aa21.91■■□□□ 1.1
VTI1B-205ENST00000555543 FLCNQ8NFG4 579 aa21.91■■□□□ 1.1
VTI1B-205ENST00000555543 FUBP3Q96I24 572 aaKnown RBP eCLIP21.91■■□□□ 1.1
VTI1B-205ENST00000555543 SDCBP2Q9H190 292 aa21.91■■□□□ 1.1
VTI1B-205ENST00000555543 ATXN3LQ9H3M9 355 aa21.91■■□□□ 1.1
VTI1B-205ENST00000555543 PTPRDP23468 1912 aa21.9■■□□□ 1.1
VTI1B-205ENST00000555543 FAM163BP0C2L3 166 aa21.9■■□□□ 1.1
VTI1B-205ENST00000555543 KRT13P13646 458 aa21.9■■□□□ 1.1
VTI1B-205ENST00000555543 CD44P16070 742 aaKnown RBP21.9■■□□□ 1.1
VTI1B-205ENST00000555543 BMP6P22004 513 aa21.9■■□□□ 1.1
VTI1B-205ENST00000555543 PIK3CAP42336 1068 aa21.9■■□□□ 1.1
VTI1B-205ENST00000555543 GRM2Q14416 872 aa21.9■■□□□ 1.1
VTI1B-205ENST00000555543 SPOPLQ6IQ16 392 aa21.9■■□□□ 1.1
VTI1B-205ENST00000555543 TMEM150AQ86TG1 271 aa21.9■■□□□ 1.1
VTI1B-205ENST00000555543 ZC3H3Q8IXZ2 948 aaKnown RBP21.9■■□□□ 1.1
VTI1B-205ENST00000555543 RSPRY1Q96DX4 576 aa21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms