RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 CT47A1Q5JQC4 288 aaPredicted RBP15.19■□□□□ 0.02
SHMT2-217ENST00000555116 SCARA5Q6ZMJ2 495 aa15.19■□□□□ 0.02
SHMT2-217ENST00000555116 IRF2BP1Q8IU81 584 aa15.19■□□□□ 0.02
SHMT2-217ENST00000555116 GJD3Q8N144 294 aa15.19■□□□□ 0.02
SHMT2-217ENST00000555116 OR6B3Q8NGW1 331 aa15.19■□□□□ 0.02
SHMT2-217ENST00000555116 SPPL2BQ8TCT7 592 aa15.19■□□□□ 0.02
SHMT2-217ENST00000555116 ANP32BQ92688 251 aaKnown RBP15.19■□□□□ 0.02
SHMT2-217ENST00000555116 PPP1R9BQ96SB3 815 aa15.19■□□□□ 0.02
SHMT2-217ENST00000555116 BCO2Q9BYV7 579 aa15.19■□□□□ 0.02
SHMT2-217ENST00000555116 SNX25Q9H3E2 840 aa15.19■□□□□ 0.02
SHMT2-217ENST00000555116 CRTAC1Q9NQ79 661 aa15.19■□□□□ 0.02
SHMT2-217ENST00000555116 RAB20Q9NX57 234 aa15.19■□□□□ 0.02
SHMT2-217ENST00000555116 CEP72Q9P209 647 aa15.19■□□□□ 0.02
SHMT2-217ENST00000555116 GTF3C4Q9UKN8 822 aa15.19■□□□□ 0.02
SHMT2-217ENST00000555116 CLSTN1O94985 981 aa15.18■□□□□ 0.02
SHMT2-217ENST00000555116 P4HA1P13674 534 aa15.18■□□□□ 0.02
SHMT2-217ENST00000555116 FMO5P49326 533 aa15.18■□□□□ 0.02
SHMT2-217ENST00000555116 PSMC1P62191 440 aaKnown RBP15.18■□□□□ 0.02
SHMT2-217ENST00000555116 CCDC173Q0VFZ6 552 aa15.18■□□□□ 0.02
SHMT2-217ENST00000555116 IMPG2Q9BZV3 1241 aa15.18■□□□□ 0.02
SHMT2-217ENST00000555116 DNAJC25Q9H1X3 360 aa15.18■□□□□ 0.02
SHMT2-217ENST00000555116 ABI2Q9NYB9 513 aaPredicted RBP15.18■□□□□ 0.02
SHMT2-217ENST00000555116 PCDHB5Q9Y5E4 795 aa15.18■□□□□ 0.02
SHMT2-217ENST00000555116 C2CD4DB7Z1M9 353 aa15.18■□□□□ 0.02
SHMT2-217ENST00000555116 PMM2O15305 246 aa15.18■□□□□ 0.02
SHMT2-217ENST00000555116 SOAT2O75908 522 aa15.18■□□□□ 0.02
SHMT2-217ENST00000555116 CCDC192P0DO97 292 aa15.18■□□□□ 0.02
SHMT2-217ENST00000555116 HAPLN1P10915 354 aaPredicted RBP15.18■□□□□ 0.02
SHMT2-217ENST00000555116 SP100P23497 879 aaPredicted RBP15.18■□□□□ 0.02
SHMT2-217ENST00000555116 CNOT6LQ96LI5 555 aaKnown RBP15.18■□□□□ 0.02
SHMT2-217ENST00000555116 NIF3L1Q9GZT8 377 aa15.18■□□□□ 0.02
SHMT2-217ENST00000555116 ABCB6Q9NP58 842 aa15.18■□□□□ 0.02
SHMT2-217ENST00000555116 AVENQ9NQS1 362 aaPredicted RBP15.18■□□□□ 0.02
SHMT2-217ENST00000555116 USTQ9Y2C2 406 aa15.18■□□□□ 0.02
SHMT2-217ENST00000555116 NR2E1Q9Y466 385 aa15.18■□□□□ 0.02
SHMT2-217ENST00000555116 ZNF638Q14966 1978 aaKnown RBP15.17■□□□□ 0.02
SHMT2-217ENST00000555116 N4BP1O75113 896 aaKnown RBP15.17■□□□□ 0.02
SHMT2-217ENST00000555116 RHOP08100 348 aa15.17■□□□□ 0.02
SHMT2-217ENST00000555116 SSTR3P32745 418 aaPredicted RBP15.17■□□□□ 0.02
SHMT2-217ENST00000555116 TUFMP49411 452 aaKnown RBP15.17■□□□□ 0.02
SHMT2-217ENST00000555116 PLD1Q13393 1074 aa15.17■□□□□ 0.02
SHMT2-217ENST00000555116 CCDC150Q8NCX0 1101 aa15.17■□□□□ 0.02
SHMT2-217ENST00000555116 TATDN2Q93075 761 aa15.17■□□□□ 0.02
SHMT2-217ENST00000555116 LPIN3Q9BQK8 851 aa15.17■□□□□ 0.02
SHMT2-217ENST00000555116 DPEP3Q9H4B8 488 aa15.17■□□□□ 0.02
SHMT2-217ENST00000555116 THAP9Q9H5L6 903 aa15.17■□□□□ 0.02
SHMT2-217ENST00000555116 CYP3A43Q9HB55 503 aa15.17■□□□□ 0.02
SHMT2-217ENST00000555116 A8MXQ7 604 aa15.16■□□□□ 0.02
SHMT2-217ENST00000555116 PTPN2P17706 415 aa15.16■□□□□ 0.02
SHMT2-217ENST00000555116 PTPN1P18031 435 aaKnown RBP15.16■□□□□ 0.02
SHMT2-217ENST00000555116 ATF6P18850 670 aa15.16■□□□□ 0.02
SHMT2-217ENST00000555116 FSHRP23945 695 aa15.16■□□□□ 0.02
SHMT2-217ENST00000555116 ALDH1A3P47895 512 aa15.16■□□□□ 0.02
SHMT2-217ENST00000555116 KCNH2Q12809 1159 aa15.16■□□□□ 0.02
SHMT2-217ENST00000555116 MGAT5BQ3V5L5 792 aa15.16■□□□□ 0.02
SHMT2-217ENST00000555116 PABPC1LQ4VXU2 614 aaKnown RBP15.16■□□□□ 0.02
SHMT2-217ENST00000555116 SASS6Q6UVJ0 657 aa15.16■□□□□ 0.02
SHMT2-217ENST00000555116 OTOP3Q7RTS5 596 aa15.16■□□□□ 0.02
SHMT2-217ENST00000555116 MYCBPAPQ8TBZ2 947 aa15.16■□□□□ 0.02
SHMT2-217ENST00000555116 MYLPFQ96A32 169 aa15.16■□□□□ 0.02
SHMT2-217ENST00000555116 FAXDC2Q96IV6 333 aa15.16■□□□□ 0.02
SHMT2-217ENST00000555116 MYADMQ96S97 322 aa15.16■□□□□ 0.02
SHMT2-217ENST00000555116 SEPT5Q99719 369 aaPredicted RBP15.16■□□□□ 0.02
SHMT2-217ENST00000555116 ANO10Q9NW15 660 aa15.16■□□□□ 0.02
SHMT2-217ENST00000555116 HMGXB4Q9UGU5 601 aa15.16■□□□□ 0.02
SHMT2-217ENST00000555116 OBSL1O75147 1896 aa15.16■□□□□ 0.02
SHMT2-217ENST00000555116 P4HA2O15460 535 aa15.16■□□□□ 0.02
SHMT2-217ENST00000555116 CYP2F1P24903 491 aa15.16■□□□□ 0.02
SHMT2-217ENST00000555116 EPHB3P54753 998 aa15.16■□□□□ 0.02
SHMT2-217ENST00000555116 EPHA5P54756 1037 aa15.16■□□□□ 0.02
SHMT2-217ENST00000555116 INCA1Q0VD86 236 aa15.16■□□□□ 0.02
SHMT2-217ENST00000555116 MAPRE1Q15691 268 aaKnown RBP15.16■□□□□ 0.02
SHMT2-217ENST00000555116 TPD52L1Q16890 204 aaPredicted RBP15.16■□□□□ 0.02
SHMT2-217ENST00000555116 CFAP221Q4G0U5 840 aa15.16■□□□□ 0.02
SHMT2-217ENST00000555116 MDH1BQ5I0G3 518 aa15.16■□□□□ 0.02
SHMT2-217ENST00000555116 SPATA2LQ8IUW3 424 aaPredicted RBP15.16■□□□□ 0.02
SHMT2-217ENST00000555116 ZDHHC14Q8IZN3 488 aa15.16■□□□□ 0.02
SHMT2-217ENST00000555116 HS6ST3Q8IZP7 471 aa15.16■□□□□ 0.02
SHMT2-217ENST00000555116 ELMOD1Q8N336 334 aa15.16■□□□□ 0.02
SHMT2-217ENST00000555116 TDRD5Q8NAT2 981 aaKnown RBP15.16■□□□□ 0.02
SHMT2-217ENST00000555116 B3GALNT2Q8NCR0 500 aa15.16■□□□□ 0.02
SHMT2-217ENST00000555116 RNF214Q8ND24 703 aa15.16■□□□□ 0.02
SHMT2-217ENST00000555116 ITFG1Q8TB96 612 aa15.16■□□□□ 0.02
SHMT2-217ENST00000555116 FUBP3Q96I24 572 aaKnown RBP eCLIP15.16■□□□□ 0.02
SHMT2-217ENST00000555116 ZNF512Q96ME7 567 aaPredicted RBP15.16■□□□□ 0.02
SHMT2-217ENST00000555116 CORO1BQ9BR76 489 aa15.16■□□□□ 0.02
SHMT2-217ENST00000555116 LRRC3Q9BY71 257 aa15.16■□□□□ 0.02
SHMT2-217ENST00000555116 RTN4Q9NQC3 1192 aaKnown RBP15.16■□□□□ 0.02
SHMT2-217ENST00000555116 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.16■□□□□ 0.02
SHMT2-217ENST00000555116 TNFRSF10AO00220 468 aa15.15■□□□□ 0.02
SHMT2-217ENST00000555116 DLL1O00548 723 aa15.15■□□□□ 0.02
SHMT2-217ENST00000555116 AFPP02771 609 aaKnown RBP15.15■□□□□ 0.02
SHMT2-217ENST00000555116 GPR15P49685 360 aa15.15■□□□□ 0.02
SHMT2-217ENST00000555116 NDST1P52848 882 aa15.15■□□□□ 0.02
SHMT2-217ENST00000555116 STX1AQ16623 288 aa15.15■□□□□ 0.02
SHMT2-217ENST00000555116 SLC5A9Q2M3M2 681 aa15.15■□□□□ 0.02
SHMT2-217ENST00000555116 WDR44Q5JSH3 913 aa15.15■□□□□ 0.02
SHMT2-217ENST00000555116 PRSS36Q5K4E3 855 aa15.15■□□□□ 0.02
SHMT2-217ENST00000555116 C4orf50Q6ZRC1 276 aa15.15■□□□□ 0.02
SHMT2-217ENST00000555116 C11orf57Q6ZUT1 292 aaPredicted RBP15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms