RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 CCT8L2Q96SF2 557 aa12.36□□□□□ -0.43
SHMT2-212ENST00000554467 OSBPL7Q9BZF2 842 aa12.36□□□□□ -0.43
SHMT2-212ENST00000554467 RNF39Q9H2S5 420 aa12.36□□□□□ -0.43
SHMT2-212ENST00000554467 AVENQ9NQS1 362 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-212ENST00000554467 GJD2Q9UKL4 321 aa12.36□□□□□ -0.43
SHMT2-212ENST00000554467 UTP11Q9Y3A2 253 aaKnown RBP12.36□□□□□ -0.43
SHMT2-212ENST00000554467 PROSCO94903 275 aa12.35□□□□□ -0.43
SHMT2-212ENST00000554467 PSMC4P43686 418 aa12.35□□□□□ -0.43
SHMT2-212ENST00000554467 KAZNQ674X7 775 aa12.35□□□□□ -0.43
SHMT2-212ENST00000554467 CCDC137Q6PK04 289 aaKnown RBP12.35□□□□□ -0.43
SHMT2-212ENST00000554467 ERICH1Q86X53 443 aa12.35□□□□□ -0.43
SHMT2-212ENST00000554467 PHF13Q86YI8 300 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-212ENST00000554467 JAMLQ86YT9 394 aa12.35□□□□□ -0.43
SHMT2-212ENST00000554467 CCDC105Q8IYK2 499 aa12.35□□□□□ -0.43
SHMT2-212ENST00000554467 EMC1Q8N766 993 aa12.35□□□□□ -0.43
SHMT2-212ENST00000554467 SLC4A11Q8NBS3 891 aa12.35□□□□□ -0.43
SHMT2-212ENST00000554467 HEXIM2Q96MH2 286 aaKnown RBP12.35□□□□□ -0.43
SHMT2-212ENST00000554467 GCOM2Q9BZD3 368 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-212ENST00000554467 AP5M1Q9H0R1 490 aa12.35□□□□□ -0.43
SHMT2-212ENST00000554467 SLITRK6Q9H5Y7 841 aa12.35□□□□□ -0.43
SHMT2-212ENST00000554467 CLNS1AP54105 237 aaKnown RBP12.35□□□□□ -0.43
SHMT2-212ENST00000554467 ZNF252P-AS1Q0IIN9 211 aa12.35□□□□□ -0.43
SHMT2-212ENST00000554467 PTPN20Q4JDL3 420 aa12.35□□□□□ -0.43
SHMT2-212ENST00000554467 DNAJC24Q6P3W2 148 aa12.35□□□□□ -0.43
SHMT2-212ENST00000554467 TRIM72Q6ZMU5 477 aa12.35□□□□□ -0.43
SHMT2-212ENST00000554467 IFNLR1Q8IU57 520 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-212ENST00000554467 TRPV1Q8NER1 839 aa12.35□□□□□ -0.43
SHMT2-212ENST00000554467 MYCBPAPQ8TBZ2 947 aa12.35□□□□□ -0.43
SHMT2-212ENST00000554467 UBLCP1Q8WVY7 318 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-212ENST00000554467 NAP1L3Q99457 506 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-212ENST00000554467 GOLGA2P5Q9HBQ8 144 aa12.35□□□□□ -0.43
SHMT2-212ENST00000554467 CHST7Q9NS84 486 aa12.35□□□□□ -0.43
SHMT2-212ENST00000554467 CACNG4Q9UBN1 327 aa12.35□□□□□ -0.43
SHMT2-212ENST00000554467 R3HDM2Q9Y2K5 976 aaKnown RBP12.35□□□□□ -0.43
SHMT2-212ENST00000554467 ANKRD33BA6NCL7 494 aa12.34□□□□□ -0.43
SHMT2-212ENST00000554467 MYBL1P10243 752 aa12.34□□□□□ -0.43
SHMT2-212ENST00000554467 TNFRSF8P28908 595 aa12.34□□□□□ -0.43
SHMT2-212ENST00000554467 VPS41P49754 854 aa12.34□□□□□ -0.43
SHMT2-212ENST00000554467 PLTPP55058 493 aa12.34□□□□□ -0.43
SHMT2-212ENST00000554467 POU5F1BQ06416 359 aa12.34□□□□□ -0.43
SHMT2-212ENST00000554467 PTGISQ16647 500 aa12.34□□□□□ -0.43
SHMT2-212ENST00000554467 PLEKHA7Q6IQ23 1121 aa12.34□□□□□ -0.43
SHMT2-212ENST00000554467 PRUNE1Q86TP1 453 aa12.34□□□□□ -0.43
SHMT2-212ENST00000554467 TMEM35BQ8NCS4 154 aa12.34□□□□□ -0.43
SHMT2-212ENST00000554467 FEZF2Q8TBJ5 459 aa12.34□□□□□ -0.43
SHMT2-212ENST00000554467 CAVIN3Q969G5 261 aa12.34□□□□□ -0.43
SHMT2-212ENST00000554467 CPXM1Q96SM3 734 aa12.34□□□□□ -0.43
SHMT2-212ENST00000554467 SYNCQ9H7C4 482 aa12.34□□□□□ -0.43
SHMT2-212ENST00000554467 PARVAQ9NVD7 372 aa12.34□□□□□ -0.43
SHMT2-212ENST00000554467 HAUS2Q9NVX0 235 aa12.34□□□□□ -0.43
SHMT2-212ENST00000554467 GABRQQ9UN88 632 aa12.34□□□□□ -0.43
SHMT2-212ENST00000554467 NRCAMQ92823 1304 aa12.34□□□□□ -0.43
SHMT2-212ENST00000554467 ZSWIM8A7E2V4 1837 aa12.34□□□□□ -0.43
SHMT2-212ENST00000554467 SMIM23A6NLE4 172 aa12.34□□□□□ -0.43
SHMT2-212ENST00000554467 PHF2O75151 1096 aa12.34□□□□□ -0.43
SHMT2-212ENST00000554467 RALAP11233 206 aa12.34□□□□□ -0.43
SHMT2-212ENST00000554467 KRT10P13645 584 aa12.34□□□□□ -0.43
SHMT2-212ENST00000554467 CTNNA2P26232 953 aa12.34□□□□□ -0.43
SHMT2-212ENST00000554467 NDST1P52848 882 aa12.34□□□□□ -0.43
SHMT2-212ENST00000554467 C1QBPQ07021 282 aaKnown RBP12.34□□□□□ -0.43
SHMT2-212ENST00000554467 SIX1Q15475 284 aaPredicted RBP12.34□□□□□ -0.43
SHMT2-212ENST00000554467 SNCBQ16143 134 aa12.34□□□□□ -0.43
SHMT2-212ENST00000554467 FSCN1Q16658 493 aaKnown RBP12.34□□□□□ -0.43
SHMT2-212ENST00000554467 FAM182AQ5T1J6 154 aa12.34□□□□□ -0.43
SHMT2-212ENST00000554467 CXCL17Q6UXB2 119 aa12.34□□□□□ -0.43
SHMT2-212ENST00000554467 TRIM11Q96F44 468 aa12.34□□□□□ -0.43
SHMT2-212ENST00000554467 DDX27Q96GQ7 796 aaKnown RBP12.34□□□□□ -0.43
SHMT2-212ENST00000554467 SNX9Q9Y5X1 595 aa12.34□□□□□ -0.43
SHMT2-212ENST00000554467 GOLGA6L10A6NI86 522 aa12.34□□□□□ -0.43
SHMT2-212ENST00000554467 RRN3P2A6NIE6 340 aa12.34□□□□□ -0.43
SHMT2-212ENST00000554467 M0QYV0 167 aa12.34□□□□□ -0.43
SHMT2-212ENST00000554467 CTSHP09668 335 aa12.34□□□□□ -0.43
SHMT2-212ENST00000554467 RGS2P41220 211 aa12.34□□□□□ -0.43
SHMT2-212ENST00000554467 ADCY2Q08462 1091 aa12.34□□□□□ -0.43
SHMT2-212ENST00000554467 JOSD2Q8TAC2 188 aa12.34□□□□□ -0.43
SHMT2-212ENST00000554467 PIK3R5Q8WYR1 880 aa12.34□□□□□ -0.43
SHMT2-212ENST00000554467 USP6NLQ92738 828 aa12.34□□□□□ -0.43
SHMT2-212ENST00000554467 BCO2Q9BYV7 579 aa12.34□□□□□ -0.43
SHMT2-212ENST00000554467 MRPL47Q9HD33 250 aaKnown RBP12.34□□□□□ -0.43
SHMT2-212ENST00000554467 PPANQ9NQ55 473 aaKnown RBP12.34□□□□□ -0.43
SHMT2-212ENST00000554467 FAM49BQ9NUQ9 324 aa12.34□□□□□ -0.43
SHMT2-212ENST00000554467 RECQL4O94761 1208 aa12.33□□□□□ -0.44
SHMT2-212ENST00000554467 DARSP14868 501 aaKnown RBP12.33□□□□□ -0.44
SHMT2-212ENST00000554467 IRX1P78414 480 aaPredicted RBP12.33□□□□□ -0.44
SHMT2-212ENST00000554467 CAP1Q01518 475 aa12.33□□□□□ -0.44
SHMT2-212ENST00000554467 PTPN11Q06124 597 aaPredicted RBP12.33□□□□□ -0.44
SHMT2-212ENST00000554467 SMTNL2Q2TAL5 461 aa12.33□□□□□ -0.44
SHMT2-212ENST00000554467 SGO2Q562F6 1265 aa12.33□□□□□ -0.44
SHMT2-212ENST00000554467 UBAP2Q5T6F2 1119 aaKnown RBP12.33□□□□□ -0.44
SHMT2-212ENST00000554467 KDM7AQ6ZMT4 941 aa12.33□□□□□ -0.44
SHMT2-212ENST00000554467 ZNF410Q86VK4 478 aa12.33□□□□□ -0.44
SHMT2-212ENST00000554467 NLRP14Q86W24 1093 aa12.33□□□□□ -0.44
SHMT2-212ENST00000554467 SPATS2Q86XZ4 545 aaKnown RBP12.33□□□□□ -0.44
SHMT2-212ENST00000554467 HAUS1Q96CS2 278 aa12.33□□□□□ -0.44
SHMT2-212ENST00000554467 ASB7Q9H672 318 aa12.33□□□□□ -0.44
SHMT2-212ENST00000554467 LRRC4CQ9HCJ2 640 aa12.33□□□□□ -0.44
SHMT2-212ENST00000554467 PARP2Q9UGN5 583 aa12.33□□□□□ -0.44
SHMT2-212ENST00000554467 PLAAQ9Y263 795 aa12.33□□□□□ -0.44
SHMT2-212ENST00000554467 GRAP2O75791 330 aa12.33□□□□□ -0.44
SHMT2-212ENST00000554467 EIF4BP23588 611 aaKnown RBP12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms