RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 SMIM28A0A1B0GU29 152 aa27.84■■■□□ 2.05
CCDC88C-205ENST00000553403 TCRBV7S2A1N4TA0A589 114 aa27.84■■■□□ 2.05
CCDC88C-205ENST00000553403 ADAMTS4O75173 837 aa27.84■■■□□ 2.05
CCDC88C-205ENST00000553403 CYP3A5P20815 502 aa27.84■■■□□ 2.05
CCDC88C-205ENST00000553403 COILP38432 576 aaPredicted RBP27.84■■■□□ 2.05
CCDC88C-205ENST00000553403 CACNB2Q08289 660 aaPredicted RBP27.84■■■□□ 2.05
CCDC88C-205ENST00000553403 ZNF252P-AS1Q0IIN9 211 aa27.84■■■□□ 2.05
CCDC88C-205ENST00000553403 DUPD1Q68J44 220 aa27.84■■■□□ 2.05
CCDC88C-205ENST00000553403 RPAINQ86UA6 219 aa27.84■■■□□ 2.05
CCDC88C-205ENST00000553403 PARP2Q9UGN5 583 aa27.84■■■□□ 2.05
CCDC88C-205ENST00000553403 USTQ9Y2C2 406 aa27.84■■■□□ 2.05
CCDC88C-205ENST00000553403 IPPQ9Y573 584 aa27.84■■■□□ 2.05
CCDC88C-205ENST00000553403 SNX9Q9Y5X1 595 aa27.84■■■□□ 2.05
CCDC88C-205ENST00000553403 CDY2AQ9Y6F7 541 aa27.84■■■□□ 2.05
CCDC88C-205ENST00000553403 TRIP11Q15643 1979 aa27.84■■■□□ 2.05
CCDC88C-205ENST00000553403 M0QYV0 167 aa27.84■■■□□ 2.05
CCDC88C-205ENST00000553403 PODXLO00592 558 aa27.84■■■□□ 2.05
CCDC88C-205ENST00000553403 PIRO00625 290 aa27.84■■■□□ 2.05
CCDC88C-205ENST00000553403 PPEF2O14830 753 aa27.84■■■□□ 2.05
CCDC88C-205ENST00000553403 DAPK3O43293 454 aa27.84■■■□□ 2.05
CCDC88C-205ENST00000553403 GPD2P43304 727 aa27.84■■■□□ 2.05
CCDC88C-205ENST00000553403 GDF6Q6KF10 455 aaPredicted RBP27.84■■■□□ 2.05
CCDC88C-205ENST00000553403 SESTD1Q86VW0 696 aa27.84■■■□□ 2.05
CCDC88C-205ENST00000553403 TRIM51Q9BSJ1 452 aa27.84■■■□□ 2.05
CCDC88C-205ENST00000553403 GOLGA6BA6NDN3 693 aa27.83■■■□□ 2.05
CCDC88C-205ENST00000553403 PNPLA4P41247 253 aa27.83■■■□□ 2.05
CCDC88C-205ENST00000553403 PSMC1P62191 440 aaKnown RBP27.83■■■□□ 2.05
CCDC88C-205ENST00000553403 TRIM32Q13049 653 aa27.83■■■□□ 2.05
CCDC88C-205ENST00000553403 GLRA4Q5JXX5 417 aa27.83■■■□□ 2.05
CCDC88C-205ENST00000553403 CCDC137Q6PK04 289 aaKnown RBP27.83■■■□□ 2.05
CCDC88C-205ENST00000553403 UNC93AQ86WB7 457 aa27.83■■■□□ 2.05
CCDC88C-205ENST00000553403 DDX42Q86XP3 938 aaKnown RBP eCLIP27.83■■■□□ 2.05
CCDC88C-205ENST00000553403 XYLT1Q86Y38 959 aa27.83■■■□□ 2.05
CCDC88C-205ENST00000553403 TSEN2Q8NCE0 465 aaKnown RBP27.83■■■□□ 2.05
CCDC88C-205ENST00000553403 SMG8Q8ND04 991 aaKnown RBP27.83■■■□□ 2.05
CCDC88C-205ENST00000553403 FNIP1Q8TF40 1166 aa27.83■■■□□ 2.05
CCDC88C-205ENST00000553403 ABHD8Q96I13 439 aa27.83■■■□□ 2.05
CCDC88C-205ENST00000553403 ZNF560Q96MR9 790 aa27.83■■■□□ 2.05
CCDC88C-205ENST00000553403 CPXM1Q96SM3 734 aa27.83■■■□□ 2.05
CCDC88C-205ENST00000553403 HSPA9P38646 679 aaKnown RBP27.82■■■□□ 2.04
CCDC88C-205ENST00000553403 CETN2P41208 172 aa27.82■■■□□ 2.04
CCDC88C-205ENST00000553403 OGDHQ02218 1023 aa27.82■■■□□ 2.04
CCDC88C-205ENST00000553403 TTC27Q6P3X3 843 aa27.82■■■□□ 2.04
CCDC88C-205ENST00000553403 MRPL45Q9BRJ2 306 aaKnown RBP27.82■■■□□ 2.04
CCDC88C-205ENST00000553403 MIS12Q9H081 205 aa27.82■■■□□ 2.04
CCDC88C-205ENST00000553403 RNF39Q9H2S5 420 aa27.82■■■□□ 2.04
CCDC88C-205ENST00000553403 SYNCQ9H7C4 482 aa27.82■■■□□ 2.04
CCDC88C-205ENST00000553403 XPNPEP3Q9NQH7 507 aa27.82■■■□□ 2.04
CCDC88C-205ENST00000553403 POLR3GO15318 223 aaPredicted RBP27.81■■■□□ 2.04
CCDC88C-205ENST00000553403 HSF2BPO75031 334 aa27.81■■■□□ 2.04
CCDC88C-205ENST00000553403 KRT3P12035 628 aa27.81■■■□□ 2.04
CCDC88C-205ENST00000553403 SSR1P43307 286 aaKnown RBP27.81■■■□□ 2.04
CCDC88C-205ENST00000553403 SP3Q02447 781 aa27.81■■■□□ 2.04
CCDC88C-205ENST00000553403 PDCLQ13371 301 aa27.81■■■□□ 2.04
CCDC88C-205ENST00000553403 TWF2Q6IBS0 349 aaKnown RBP27.81■■■□□ 2.04
CCDC88C-205ENST00000553403 SERINC5Q86VE9 423 aa27.81■■■□□ 2.04
CCDC88C-205ENST00000553403 RCOR2Q8IZ40 523 aa27.81■■■□□ 2.04
CCDC88C-205ENST00000553403 KLHDC9Q8NEP7 349 aa27.81■■■□□ 2.04
CCDC88C-205ENST00000553403 SLCO2A1Q92959 643 aa27.81■■■□□ 2.04
CCDC88C-205ENST00000553403 MCRS1Q96EZ8 462 aa27.81■■■□□ 2.04
CCDC88C-205ENST00000553403 RBM41Q96IZ5 413 aaKnown RBP27.81■■■□□ 2.04
CCDC88C-205ENST00000553403 KLK14Q9P0G3 267 aa27.81■■■□□ 2.04
CCDC88C-205ENST00000553403 AGPSO00116 658 aa27.81■■■□□ 2.04
CCDC88C-205ENST00000553403 SYF2O95926 243 aaKnown RBP27.81■■■□□ 2.04
CCDC88C-205ENST00000553403 ERBB2P04626 1255 aa27.81■■■□□ 2.04
CCDC88C-205ENST00000553403 CST5P28325 142 aaPredicted RBP27.81■■■□□ 2.04
CCDC88C-205ENST00000553403 GBP1P32455 592 aa27.81■■■□□ 2.04
CCDC88C-205ENST00000553403 FAM193AP78312 1265 aa27.81■■■□□ 2.04
CCDC88C-205ENST00000553403 DAB2IPQ5VWQ8 1189 aa27.81■■■□□ 2.04
CCDC88C-205ENST00000553403 HOMER3Q9NSC5 361 aa27.81■■■□□ 2.04
CCDC88C-205ENST00000553403 GDAP2Q9NXN4 497 aa27.81■■■□□ 2.04
CCDC88C-205ENST00000553403 GOLGA8SH3BPF8 625 aa27.8■■■□□ 2.04
CCDC88C-205ENST00000553403 FBXO47Q5MNV8 452 aa27.8■■■□□ 2.04
CCDC88C-205ENST00000553403 IPO4Q8TEX9 1081 aaKnown RBP27.8■■■□□ 2.04
CCDC88C-205ENST00000553403 LRRC45Q96CN5 670 aa27.8■■■□□ 2.04
CCDC88C-205ENST00000553403 SENP6Q9GZR1 1112 aaPredicted RBP27.8■■■□□ 2.04
CCDC88C-205ENST00000553403 MCOLN1Q9GZU1 580 aa27.8■■■□□ 2.04
CCDC88C-205ENST00000553403 DPH5Q9H2P9 285 aa27.8■■■□□ 2.04
CCDC88C-205ENST00000553403 CHST12Q9NRB3 414 aa27.8■■■□□ 2.04
CCDC88C-205ENST00000553403 DDX56Q9NY93 547 aaKnown RBP27.8■■■□□ 2.04
CCDC88C-205ENST00000553403 TSPAN16Q9UKR8 245 aa27.8■■■□□ 2.04
CCDC88C-205ENST00000553403 SCN1AP35498 2009 aa27.79■■■□□ 2.04
CCDC88C-205ENST00000553403 F8VP50 259 aa27.79■■■□□ 2.04
CCDC88C-205ENST00000553403 RPS6KA5O75582 802 aa27.79■■■□□ 2.04
CCDC88C-205ENST00000553403 SETSIPP0DME0 302 aa27.79■■■□□ 2.04
CCDC88C-205ENST00000553403 GGCXP38435 758 aa27.79■■■□□ 2.04
CCDC88C-205ENST00000553403 FAM47CQ5HY64 1035 aa27.79■■■□□ 2.04
CCDC88C-205ENST00000553403 CCDC50Q8IVM0 306 aa27.79■■■□□ 2.04
CCDC88C-205ENST00000553403 CCDC105Q8IYK2 499 aa27.79■■■□□ 2.04
CCDC88C-205ENST00000553403 NEUROG2Q9H2A3 272 aa27.79■■■□□ 2.04
CCDC88C-205ENST00000553403 TJP2Q9UDY2 1190 aa27.79■■■□□ 2.04
CCDC88C-205ENST00000553403 RFC1P35251 1148 aaPredicted RBP27.78■■■□□ 2.04
CCDC88C-205ENST00000553403 COPS2P61201 443 aa27.78■■■□□ 2.04
CCDC88C-205ENST00000553403 MGAT3Q09327 533 aa27.78■■■□□ 2.04
CCDC88C-205ENST00000553403 KLF1Q13351 362 aaPredicted RBP27.78■■■□□ 2.04
CCDC88C-205ENST00000553403 SOWAHAQ2M3V2 549 aa27.78■■■□□ 2.04
CCDC88C-205ENST00000553403 UBA3Q8TBC4 463 aa27.78■■■□□ 2.04
CCDC88C-205ENST00000553403 OSBPL8Q9BZF1 889 aa27.78■■■□□ 2.04
CCDC88C-205ENST00000553403 DNAI2Q9GZS0 605 aa27.78■■■□□ 2.04
CCDC88C-205ENST00000553403 ASGR1P07306 291 aa27.78■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms