RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 RASSF2P50749 326 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 NRLP54845 237 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 GDF10P55107 478 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 NLRP11P59045 1033 aaKnown RBP5.71□□□□□ -1.5
LIMA1-212ENST00000552491 SATB1Q01826 763 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 DMP1Q13316 513 aaPredicted RBP5.71□□□□□ -1.5
LIMA1-212ENST00000552491 AOC3Q16853 763 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 ZACNQ401N2 412 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 SLC45A4Q5BKX6 768 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 SPDYAQ5MJ70 313 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 FNBP1LQ5T0N5 605 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 TMEM270Q6UE05 265 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 C4orf50Q6ZRC1 276 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 ABRAQ8N0Z2 381 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 CPXCR1Q8N123 301 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 GPD1LQ8N335 351 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 PHC3Q8NDX5 983 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 GADD45GIP1Q8TAE8 222 aaPredicted RBP5.71□□□□□ -1.5
LIMA1-212ENST00000552491 TCP10LQ8TDR4 215 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 ZNF622Q969S3 477 aaKnown RBP eCLIP5.71□□□□□ -1.56e-8■□□□□ 9.1
LIMA1-212ENST00000552491 TRIM11Q96F44 468 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 TIPINQ9BVW5 301 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 XPNPEP1Q9NQW7 623 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 FBXO6Q9NRD1 293 aaPredicted RBP5.71□□□□□ -1.5
LIMA1-212ENST00000552491 C1orf112Q9NSG2 853 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 SENP1Q9P0U3 644 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 RABGEF1Q9UJ41 708 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 ZFP69BQ9UJL9 534 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 SMG5Q9UPR3 1016 aaKnown RBP5.71□□□□□ -1.5
LIMA1-212ENST00000552491 KRT36O76013 467 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 STBD1O95210 358 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 IFNB1P01574 187 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 ICAM1P05362 532 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 MYCLP12524 364 aaPredicted RBP5.71□□□□□ -1.5
LIMA1-212ENST00000552491 PTPN4P29074 926 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 GNA15P30679 374 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 PCK1P35558 622 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 CTCFP49711 727 aaPredicted RBP5.71□□□□□ -1.5
LIMA1-212ENST00000552491 SESN3P58005 492 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 PSMC5P62195 406 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 C11orf91Q3C1V1 193 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 EAPPQ56P03 285 aaPredicted RBP5.71□□□□□ -1.5
LIMA1-212ENST00000552491 ACSBG2Q5FVE4 666 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 EFHC2Q5JST6 749 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 WASHC2DQ5SRD0 308 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 HHATQ5VTY9 493 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 SPOCD1Q6ZMY3 1216 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 ILDR2Q71H61 639 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 ENOSF1Q7L5Y1 443 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 APBB1IPQ7Z5R6 666 aaPredicted RBP5.71□□□□□ -1.5
LIMA1-212ENST00000552491 TTC7BQ86TV6 843 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 LRRC6Q86X45 466 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 ZNF677Q86XU0 584 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 PHF13Q86YI8 300 aaPredicted RBP5.71□□□□□ -1.5
LIMA1-212ENST00000552491 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP5.71□□□□□ -1.5
LIMA1-212ENST00000552491 FEZF2Q8TBJ5 459 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 SYTL5Q8TDW5 730 aaPredicted RBP5.71□□□□□ -1.5
LIMA1-212ENST00000552491 WDR60Q8WVS4 1066 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 FAM136AQ96C01 138 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 ZBTB10Q96DT7 871 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 ZBTB45Q96K62 511 aaPredicted RBP5.71□□□□□ -1.5
LIMA1-212ENST00000552491 TTC25Q96NG3 672 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 NTPCRQ9BSD7 190 aaKnown RBP5.71□□□□□ -1.5
LIMA1-212ENST00000552491 KCNK13Q9HB14 408 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 METTL5Q9NRN9 209 aaKnown RBP5.71□□□□□ -1.5
LIMA1-212ENST00000552491 NMRK1Q9NWW6 199 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 RPL26L1Q9UNX3 145 aaKnown RBP5.71□□□□□ -1.5
LIMA1-212ENST00000552491 SCAF8Q9UPN6 1271 aaKnown RBP5.71□□□□□ -1.5
LIMA1-212ENST00000552491 EXOC7Q9UPT5 735 aa5.71□□□□□ -1.5
LIMA1-212ENST00000552491 KIAA1217Q5T5P2 1943 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 CNTNAP1P78357 1384 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 ARID2Q68CP9 1835 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 A0A0G2JND7 137 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 TCRBV5S1A1TA0A578 114 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 TMEM191CA6NGB0 347 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 KRT1P04264 644 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 EDN1P05305 212 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 TMEM191BP0C7N4 346 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 TNNI1P19237 187 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 MARK3P27448 753 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 CALRP27797 417 aaKnown RBP5.7□□□□□ -1.5
LIMA1-212ENST00000552491 ALDH1B1P30837 517 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 VCPP55072 806 aaKnown RBP5.7□□□□□ -1.5
LIMA1-212ENST00000552491 FKBP1AP62942 108 aaKnown RBP5.7□□□□□ -1.5
LIMA1-212ENST00000552491 CLDN10P78369 228 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 CUL2Q13617 745 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 MORF4L2Q15014 288 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 PGM5Q15124 567 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 BRDTQ58F21 947 aaPredicted RBP5.7□□□□□ -1.5
LIMA1-212ENST00000552491 CMPK2Q5EBM0 449 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 ZFYVE27Q5T4F4 411 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 DRICH1Q6PGQ1 229 aaPredicted RBP5.7□□□□□ -1.5
LIMA1-212ENST00000552491 NIPA1Q7RTP0 329 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 USP37Q86T82 979 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 IGDCC3Q8IVU1 814 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 SAMD3Q8N6K7 520 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 SH3TC2Q8TF17 1288 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 CPT1BQ92523 772 aa5.7□□□□□ -1.5
LIMA1-212ENST00000552491 PTCD3Q96EY7 689 aaKnown RBP5.7□□□□□ -1.5
LIMA1-212ENST00000552491 ZNF333Q96JL9 665 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms