RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 PLEKHO2Q8TD55 490 aa4.43□□□□□ -1.7
LIMA1-208ENST00000551691 RSAD2Q8WXG1 361 aa4.43□□□□□ -1.7
LIMA1-208ENST00000551691 ASB15Q8WXK1 588 aa4.43□□□□□ -1.7
LIMA1-208ENST00000551691 COA7Q96BR5 231 aa4.43□□□□□ -1.7
LIMA1-208ENST00000551691 NAA15Q9BXJ9 866 aaKnown RBP4.43□□□□□ -1.7
LIMA1-208ENST00000551691 SENP6Q9GZR1 1112 aaPredicted RBP4.43□□□□□ -1.7
LIMA1-208ENST00000551691 ZHX3Q9H4I2 956 aa4.43□□□□□ -1.7
LIMA1-208ENST00000551691 CERS4Q9HA82 394 aa4.43□□□□□ -1.7
LIMA1-208ENST00000551691 CNNM1Q9NRU3 951 aa4.43□□□□□ -1.7
LIMA1-208ENST00000551691 NOL12Q9UGY1 213 aaKnown RBP eCLIP4.43□□□□□ -1.7
LIMA1-208ENST00000551691 RALYQ9UKM9 306 aaKnown RBP4.43□□□□□ -1.7
LIMA1-208ENST00000551691 OGDHLQ9ULD0 1010 aa4.43□□□□□ -1.7
LIMA1-208ENST00000551691 MAGED2Q9UNF1 606 aaPredicted RBP4.43□□□□□ -1.7
LIMA1-208ENST00000551691 ASB1Q9Y576 335 aa4.43□□□□□ -1.7
LIMA1-208ENST00000551691 CEP83Q9Y592 693 aa4.43□□□□□ -1.7
LIMA1-208ENST00000551691 ZDBF2Q9HCK1 2354 aa4.43□□□□□ -1.7
LIMA1-208ENST00000551691 FAM205AQ6ZU69 1335 aa4.43□□□□□ -1.7
LIMA1-208ENST00000551691 ADGRA2Q96PE1 1338 aa4.43□□□□□ -1.7
LIMA1-208ENST00000551691 IBTKQ9P2D0 1353 aaPredicted RBP4.42□□□□□ -1.7
LIMA1-208ENST00000551691 CCDC154A6NI56 674 aa4.42□□□□□ -1.7
LIMA1-208ENST00000551691 FAM90A27PA6NNH2 459 aa4.42□□□□□ -1.7
LIMA1-208ENST00000551691 PI4K2BG5E9Z4 385 aa4.42□□□□□ -1.7
LIMA1-208ENST00000551691 NRP2O60462 931 aa4.42□□□□□ -1.7
LIMA1-208ENST00000551691 HRGP04196 525 aa4.42□□□□□ -1.7
LIMA1-208ENST00000551691 ITGB8P26012 769 aa4.42□□□□□ -1.7
LIMA1-208ENST00000551691 SLC6A11P48066 632 aa4.42□□□□□ -1.7
LIMA1-208ENST00000551691 CACNA1BQ00975 2339 aa4.42□□□□□ -1.7
LIMA1-208ENST00000551691 SMAD4Q13485 552 aaKnown RBP4.42□□□□□ -1.7
LIMA1-208ENST00000551691 SNAPC2Q13487 334 aa4.42□□□□□ -1.7
LIMA1-208ENST00000551691 SEMA5AQ13591 1074 aa4.42□□□□□ -1.7
LIMA1-208ENST00000551691 GALEQ14376 348 aa4.42□□□□□ -1.7
LIMA1-208ENST00000551691 SF3B3Q15393 1217 aaKnown RBP4.42□□□□□ -1.7
LIMA1-208ENST00000551691 CNN3Q15417 329 aaKnown RBP4.42□□□□□ -1.7
LIMA1-208ENST00000551691 MUM1L1Q5H9M0 696 aa4.42□□□□□ -1.7
LIMA1-208ENST00000551691 DDX60LQ5H9U9 1706 aaKnown RBP4.42□□□□□ -1.7
LIMA1-208ENST00000551691 EMC4Q5J8M3 183 aa4.42□□□□□ -1.7
LIMA1-208ENST00000551691 NPNTQ6UXI9 565 aa4.42□□□□□ -1.7
LIMA1-208ENST00000551691 DDX55Q8NHQ9 600 aaKnown RBP eCLIP4.42□□□□□ -1.7
LIMA1-208ENST00000551691 FATE1Q969F0 183 aa4.42□□□□□ -1.7
LIMA1-208ENST00000551691 RGMAQ96B86 450 aa4.42□□□□□ -1.7
LIMA1-208ENST00000551691 CDK5RAP3Q96JB5 506 aa4.42□□□□□ -1.7
LIMA1-208ENST00000551691 CGRRF1Q99675 332 aa4.42□□□□□ -1.7
LIMA1-208ENST00000551691 LRRC27Q9C0I9 530 aa4.42□□□□□ -1.7
LIMA1-208ENST00000551691 TMEM39BQ9GZU3 492 aa4.42□□□□□ -1.7
LIMA1-208ENST00000551691 VPS11Q9H270 941 aa4.42□□□□□ -1.7
LIMA1-208ENST00000551691 LUZP4Q9P127 313 aa4.42□□□□□ -1.7
LIMA1-208ENST00000551691 ASH2LQ9UBL3 628 aa4.42□□□□□ -1.7
LIMA1-208ENST00000551691 SERPINB13Q9UIV8 391 aa4.42□□□□□ -1.7
LIMA1-208ENST00000551691 TUBD1Q9UJT1 453 aa4.42□□□□□ -1.7
LIMA1-208ENST00000551691 SYNPO2Q9UMS6 1093 aa4.42□□□□□ -1.7
LIMA1-208ENST00000551691 CORO2BQ9UQ03 480 aa4.42□□□□□ -1.7
LIMA1-208ENST00000551691 SIT1Q9Y3P8 196 aa4.42□□□□□ -1.7
LIMA1-208ENST00000551691 NUMBLQ9Y6R0 609 aa4.42□□□□□ -1.7
LIMA1-208ENST00000551691 COL3A1P02461 1466 aaPredicted RBP4.42□□□□□ -1.7
LIMA1-208ENST00000551691 SH3TC1Q8TE82 1336 aa4.42□□□□□ -1.7
LIMA1-208ENST00000551691 CHD8Q9HCK8 2581 aa4.42□□□□□ -1.7
LIMA1-208ENST00000551691 CEMIPQ8WUJ3 1361 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 SIPA1L3O60292 1781 aaPredicted RBP4.41□□□□□ -1.7
LIMA1-208ENST00000551691 TRIM43BA6NCK2 446 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 A6NNZ2 444 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 TCP10L2B9ZVM9 353 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 RASA4BC9J798 803 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 SNAP23O00161 211 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 TNPO2O14787 897 aaKnown RBP4.41□□□□□ -1.7
LIMA1-208ENST00000551691 RASA4O43374 803 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 SLC26A4O43511 780 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 PPP1R11O60927 126 aaPredicted RBP4.41□□□□□ -1.7
LIMA1-208ENST00000551691 C4BPAP04003 597 aaKnown RBP4.41□□□□□ -1.7
LIMA1-208ENST00000551691 GLI4P10075 376 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 NCAM1P13591 858 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 EIF2S2P20042 333 aaKnown RBP4.41□□□□□ -1.7
LIMA1-208ENST00000551691 MAPK10P53779 464 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 EPHA5P54756 1037 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 TNFAIP2Q03169 654 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 MALLQ13021 153 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 KRT72Q14CN4 511 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 POLD3Q15054 466 aaPredicted RBP4.41□□□□□ -1.7
LIMA1-208ENST00000551691 SEC23AQ15436 765 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 ZBTB41Q5SVQ8 909 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 STRIP1Q5VSL9 837 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 LMBR1LQ6UX01 489 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 COPS6Q7L5N1 327 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 KCNK18Q7Z418 384 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 DPP9Q86TI2 863 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 STK32CQ86UX6 486 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 GLB1L2Q8IW92 636 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 DRC7Q8IY82 874 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 CARFQ8N187 725 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 CCDC33Q8N5R6 958 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 NETO2Q8NC67 525 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 DEPTORQ8TB45 409 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 TRIM43Q96BQ3 446 aaPredicted RBP4.41□□□□□ -1.7
LIMA1-208ENST00000551691 ZBTB8AQ96BR9 441 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 PEX11GQ96HA9 241 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 HIST1H2AHQ96KK5 128 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 SGCZQ96LD1 299 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 RIPOR3Q96MK2 946 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 FOXB1Q99853 325 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 HIST1H2AJQ99878 128 aa4.41□□□□□ -1.7
LIMA1-208ENST00000551691 C7orf25Q9BPX7 421 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms