RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 FAM213AQ9BRX8 229 aa9.13□□□□□ -0.95
USP28-215ENST00000545608 SLC46A2Q9BY10 475 aa9.13□□□□□ -0.95
USP28-215ENST00000545608 FGFBP2Q9BYJ0 223 aa9.13□□□□□ -0.95
USP28-215ENST00000545608 SMG9Q9H0W8 520 aaKnown RBP9.13□□□□□ -0.95
USP28-215ENST00000545608 EPC1Q9H2F5 836 aa9.13□□□□□ -0.95
USP28-215ENST00000545608 TASP1Q9H6P5 420 aa9.13□□□□□ -0.95
USP28-215ENST00000545608 C8orf33Q9H7E9 229 aaPredicted RBP9.13□□□□□ -0.95
USP28-215ENST00000545608 MRPL44Q9H9J2 332 aaKnown RBP9.13□□□□□ -0.95
USP28-215ENST00000545608 RBM12Q9NTZ6 932 aaKnown RBP9.13□□□□□ -0.95
USP28-215ENST00000545608 TMLHEQ9NVH6 421 aa9.13□□□□□ -0.95
USP28-215ENST00000545608 GTSE1Q9NYZ3 720 aa9.13□□□□□ -0.95
USP28-215ENST00000545608 NCDNQ9UBB6 729 aa9.13□□□□□ -0.95
USP28-215ENST00000545608 SEL1LQ9UBV2 794 aa9.13□□□□□ -0.95
USP28-215ENST00000545608 DSEQ9UL01 958 aa9.13□□□□□ -0.95
USP28-215ENST00000545608 SMG5Q9UPR3 1016 aaKnown RBP9.13□□□□□ -0.95
USP28-215ENST00000545608 MYO15AQ9UKN7 3530 aa9.13□□□□□ -0.95
USP28-215ENST00000545608 MIA3Q5JRA6 1907 aa9.13□□□□□ -0.95
USP28-215ENST00000545608 FANCMQ8IYD8 2048 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 A0A087X0B3 334 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 MED19A0JLT2 244 aaPredicted RBP9.12□□□□□ -0.95
USP28-215ENST00000545608 MYBPHLA2RUH7 354 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 GOLGA8IPA6NC78 632 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 GOLGA8JA6NMD2 632 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 SPECC1L-ADORA2AF8WAN1 911 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 IL18RAPO95256 599 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 GCNT3O95395 438 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 PRAMEF12O95522 483 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 FGF19O95750 216 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 IDEP14735 1019 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 HMGA1P17096 107 aaKnown RBP9.12□□□□□ -0.95
USP28-215ENST00000545608 GAP43P17677 238 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 PDCP20941 246 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 TGM1P22735 817 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 WEE1P30291 646 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 POLR2BP30876 1174 aaKnown RBP9.12□□□□□ -0.95
USP28-215ENST00000545608 CXCL12P48061 93 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 GPR15P49685 360 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 CCR3P51677 355 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 TFAMQ00059 246 aaKnown RBP9.12□□□□□ -0.95
USP28-215ENST00000545608 TNK2Q07912 1038 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 DMWDQ09019 674 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 PUM1Q14671 1186 aaKnown RBP eCLIP9.12□□□□□ -0.95
USP28-215ENST00000545608 VEPH1Q14D04 833 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 RSPO4Q2I0M5 234 aaPredicted RBP9.12□□□□□ -0.95
USP28-215ENST00000545608 SV2CQ496J9 727 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 KMT5BQ4FZB7 885 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 ARHGAP29Q52LW3 1261 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 ARHGAP15Q53QZ3 475 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 DMRTA1Q5VZB9 504 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 DGLUCYQ7Z3D6 616 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 TMEM150AQ86TG1 271 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 NT5DC4Q86YG4 428 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 BRSK2Q8IWQ3 736 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 C1orf127Q8N9H9 656 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 STKLD1Q8NE28 680 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 SPPL2BQ8TCT7 592 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 BPIFB1Q8TDL5 484 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 C2orf15Q8WU43 125 aaKnown RBP9.12□□□□□ -0.95
USP28-215ENST00000545608 TSC1Q92574 1164 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 USP28Q96RU2 1077 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 IER2Q9BTL4 223 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 FAM126AQ9BYI3 521 aaPredicted RBP9.12□□□□□ -0.95
USP28-215ENST00000545608 OBP2AQ9NY56 170 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 ABI2Q9NYB9 513 aaPredicted RBP9.12□□□□□ -0.95
USP28-215ENST00000545608 DLL3Q9NYJ7 618 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 AGAP1Q9UPQ3 857 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 EXOC7Q9UPT5 735 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 MTMR6Q9Y217 621 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 VPS9D1Q9Y2B5 631 aa9.12□□□□□ -0.95
USP28-215ENST00000545608 COL4A2P08572 1712 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 PATJQ8NI35 1801 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 FRMD3A2A2Y4 597 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 CHURC1-FNTBB4DL54 471 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 RNF40O75150 1001 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 PRPF40AO75400 957 aaKnown RBP9.11□□□□□ -0.95
USP28-215ENST00000545608 PRPF6O94906 941 aaKnown RBP9.11□□□□□ -0.95
USP28-215ENST00000545608 F11P03951 625 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 ITGB3P05106 788 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 GARTP22102 1010 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 CDC25CP30307 473 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 HOXC13P31276 330 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 CTHP32929 405 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 TXLNAP40222 546 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 FNTBP49356 437 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 NRLP54845 237 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 SMARCB1Q12824 385 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 SLC39A14Q15043 492 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 PON2Q15165 354 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 TAF12Q16514 161 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 LPAL2Q16609 132 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 SDHAF4Q5VUM1 108 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 CCDC73Q6ZRK6 1079 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 Q6ZS52 159 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 OSTM1Q86WC4 334 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 RALGPS2Q86X27 583 aaPredicted RBP9.11□□□□□ -0.95
USP28-215ENST00000545608 DCP1BQ8IZD4 617 aaKnown RBP9.11□□□□□ -0.95
USP28-215ENST00000545608 SYCP3Q8IZU3 236 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 CMTM8Q8IZV2 173 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 PDCL2Q8N4E4 241 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 SPEM1Q8N4L4 309 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms