RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 SLMAPQ14BN4 828 aa17.24■□□□□ 0.35
COL4A1-204ENST00000543140 SMTNL2Q2TAL5 461 aa17.24■□□□□ 0.35
COL4A1-204ENST00000543140 AGBL2Q5U5Z8 902 aa17.24■□□□□ 0.35
COL4A1-204ENST00000543140 LHX5Q9H2C1 402 aa17.24■□□□□ 0.35
COL4A1-204ENST00000543140 ZWILCHQ9H900 591 aa17.24■□□□□ 0.35
COL4A1-204ENST00000543140 AAASQ9NRG9 546 aa17.24■□□□□ 0.35
COL4A1-204ENST00000543140 FEZ2Q9UHY8 353 aaPredicted RBP17.24■□□□□ 0.35
COL4A1-204ENST00000543140 STRIP2Q9ULQ0 834 aa17.24■□□□□ 0.35
COL4A1-204ENST00000543140 HES2Q9Y543 173 aa17.24■□□□□ 0.35
COL4A1-204ENST00000543140 SCN1AP35498 2009 aa17.24■□□□□ 0.35
COL4A1-204ENST00000543140 M0QYV0 167 aa17.23■□□□□ 0.35
COL4A1-204ENST00000543140 RIPK2O43353 540 aa17.23■□□□□ 0.35
COL4A1-204ENST00000543140 MICAL2O94851 1124 aa17.23■□□□□ 0.35
COL4A1-204ENST00000543140 NPTXRO95502 500 aa17.23■□□□□ 0.35
COL4A1-204ENST00000543140 ITIH2P19823 946 aa17.23■□□□□ 0.35
COL4A1-204ENST00000543140 CETN2P41208 172 aa17.23■□□□□ 0.35
COL4A1-204ENST00000543140 IQSEC1Q6DN90 963 aa17.23■□□□□ 0.35
COL4A1-204ENST00000543140 ZNF365Q70YC5 407 aa17.23■□□□□ 0.35
COL4A1-204ENST00000543140 RBM41Q96IZ5 413 aaKnown RBP17.23■□□□□ 0.35
COL4A1-204ENST00000543140 HOMER3Q9NSC5 361 aa17.23■□□□□ 0.35
COL4A1-204ENST00000543140 ACSL3O95573 720 aa17.23■□□□□ 0.35
COL4A1-204ENST00000543140 ATICP31939 592 aa17.23■□□□□ 0.35
COL4A1-204ENST00000543140 PSMC4P43686 418 aa17.23■□□□□ 0.35
COL4A1-204ENST00000543140 SEC24CP53992 1094 aa17.23■□□□□ 0.35
COL4A1-204ENST00000543140 TAP1Q03518 808 aa17.23■□□□□ 0.35
COL4A1-204ENST00000543140 KCNT1Q5JUK3 1230 aa17.23■□□□□ 0.35
COL4A1-204ENST00000543140 SPOCD1Q6ZMY3 1216 aa17.23■□□□□ 0.35
COL4A1-204ENST00000543140 HOOK3Q86VS8 718 aa17.23■□□□□ 0.35
COL4A1-204ENST00000543140 EPS8L3Q8TE67 593 aaKnown RBP17.23■□□□□ 0.35
COL4A1-204ENST00000543140 METTL5Q9NRN9 209 aaKnown RBP17.23■□□□□ 0.35
COL4A1-204ENST00000543140 ANAPC5Q9UJX4 755 aa17.23■□□□□ 0.35
COL4A1-204ENST00000543140 DNPEPQ9ULA0 475 aa17.23■□□□□ 0.35
COL4A1-204ENST00000543140 SIGLEC16A6NMB1 481 aa17.22■□□□□ 0.35
COL4A1-204ENST00000543140 P4HA1P13674 534 aa17.22■□□□□ 0.35
COL4A1-204ENST00000543140 NDST1P52848 882 aa17.22■□□□□ 0.35
COL4A1-204ENST00000543140 PPP2R2AP63151 447 aa17.22■□□□□ 0.35
COL4A1-204ENST00000543140 SYDE1Q6ZW31 735 aaPredicted RBP17.22■□□□□ 0.35
COL4A1-204ENST00000543140 XYLT1Q86Y38 959 aa17.22■□□□□ 0.35
COL4A1-204ENST00000543140 ARFGAP2Q8N6H7 521 aa17.22■□□□□ 0.35
COL4A1-204ENST00000543140 OSMRQ99650 979 aa17.22■□□□□ 0.35
COL4A1-204ENST00000543140 SNTG2Q9NY99 539 aa17.22■□□□□ 0.35
COL4A1-204ENST00000543140 NEU2Q9Y3R4 380 aa17.22■□□□□ 0.35
COL4A1-204ENST00000543140 TJP3O95049 919 aa17.22■□□□□ 0.35
COL4A1-204ENST00000543140 HOXD8P13378 290 aaPredicted RBP17.22■□□□□ 0.35
COL4A1-204ENST00000543140 HOXA11P31270 313 aaPredicted RBP17.22■□□□□ 0.35
COL4A1-204ENST00000543140 RBP5P82980 135 aa17.22■□□□□ 0.35
COL4A1-204ENST00000543140 RHBDF2Q6PJF5 856 aa17.22■□□□□ 0.35
COL4A1-204ENST00000543140 CATSPER4Q7RTX7 472 aa17.22■□□□□ 0.35
COL4A1-204ENST00000543140 ARFGAP1Q8N6T3 406 aa17.22■□□□□ 0.35
COL4A1-204ENST00000543140 GLIS1Q8NBF1 620 aa17.22■□□□□ 0.35
COL4A1-204ENST00000543140 EIF2AQ9BY44 585 aaKnown RBP17.22■□□□□ 0.35
COL4A1-204ENST00000543140 CDC42EP4Q9H3Q1 356 aaKnown RBP17.22■□□□□ 0.35
COL4A1-204ENST00000543140 RRAGCQ9HB90 399 aa17.22■□□□□ 0.35
COL4A1-204ENST00000543140 PPANQ9NQ55 473 aaKnown RBP17.22■□□□□ 0.35
COL4A1-204ENST00000543140 LCMT1Q9UIC8 334 aa17.22■□□□□ 0.35
COL4A1-204ENST00000543140 ITGA11Q9UKX5 1188 aa17.22■□□□□ 0.35
COL4A1-204ENST00000543140 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.22■□□□□ 0.35
COL4A1-204ENST00000543140 ZNF148Q9UQR1 794 aa17.22■□□□□ 0.35
COL4A1-204ENST00000543140 TRIP12Q14669 1992 aaPredicted RBP17.22■□□□□ 0.35
COL4A1-204ENST00000543140 A6NNZ2 444 aa17.21■□□□□ 0.35
COL4A1-204ENST00000543140 ANKRD65E5RJM6 399 aa17.21■□□□□ 0.35
COL4A1-204ENST00000543140 SMIM10L2AP0DMW4 78 aa17.21■□□□□ 0.35
COL4A1-204ENST00000543140 SMIM10L2BP0DMW5 78 aa17.21■□□□□ 0.35
COL4A1-204ENST00000543140 TUBB8Q3ZCM7 444 aa17.21■□□□□ 0.35
COL4A1-204ENST00000543140 LRRC38Q5VT99 294 aa17.21■□□□□ 0.35
COL4A1-204ENST00000543140 ZNF410Q86VK4 478 aa17.21■□□□□ 0.35
COL4A1-204ENST00000543140 C12orf29Q8N999 325 aa17.21■□□□□ 0.35
COL4A1-204ENST00000543140 ADAMTS10Q9H324 1103 aa17.21■□□□□ 0.35
COL4A1-204ENST00000543140 CYP3A43Q9HB55 503 aa17.21■□□□□ 0.35
COL4A1-204ENST00000543140 SLC12A6Q9UHW9 1150 aa17.21■□□□□ 0.35
COL4A1-204ENST00000543140 C2CD2Q9Y426 696 aa17.21■□□□□ 0.35
COL4A1-204ENST00000543140 NDUFAB1O14561 156 aa17.21■□□□□ 0.35
COL4A1-204ENST00000543140 PPEF2O14830 753 aa17.21■□□□□ 0.35
COL4A1-204ENST00000543140 LIASO43766 372 aa17.21■□□□□ 0.35
COL4A1-204ENST00000543140 LRCH4O75427 683 aa17.21■□□□□ 0.35
COL4A1-204ENST00000543140 ZSCAN5DPP0CG00 497 aa17.21■□□□□ 0.35
COL4A1-204ENST00000543140 IL1R2P27930 398 aa17.21■□□□□ 0.35
COL4A1-204ENST00000543140 DYNLT1P63172 113 aa17.21■□□□□ 0.35
COL4A1-204ENST00000543140 FKBP1BP68106 108 aa17.21■□□□□ 0.35
COL4A1-204ENST00000543140 IFI35P80217 286 aaPredicted RBP17.21■□□□□ 0.35
COL4A1-204ENST00000543140 PTGISQ16647 500 aa17.21■□□□□ 0.35
COL4A1-204ENST00000543140 KYAT1Q16773 422 aa17.21■□□□□ 0.35
COL4A1-204ENST00000543140 GLRA4Q5JXX5 417 aa17.21■□□□□ 0.35
COL4A1-204ENST00000543140 NIPA2Q8N8Q9 360 aa17.21■□□□□ 0.35
COL4A1-204ENST00000543140 ZMAT2Q96NC0 199 aaKnown RBP17.21■□□□□ 0.35
COL4A1-204ENST00000543140 FAM107BQ9H098 131 aa17.21■□□□□ 0.35
COL4A1-204ENST00000543140 VRTNQ9H8Y1 702 aa17.21■□□□□ 0.35
COL4A1-204ENST00000543140 FLRT1Q9NZU1 646 aa17.21■□□□□ 0.35
COL4A1-204ENST00000543140 SAE1Q9UBE0 346 aaPredicted RBP17.21■□□□□ 0.35
COL4A1-204ENST00000543140 PCSK1NQ9UHG2 260 aa17.21■□□□□ 0.35
COL4A1-204ENST00000543140 DNAH12Q6ZR08 3092 aa17.21■□□□□ 0.35
COL4A1-204ENST00000543140 SLC15A5A6NIM6 579 aa17.2■□□□□ 0.34
COL4A1-204ENST00000543140 ETS1P14921 441 aa17.2■□□□□ 0.34
COL4A1-204ENST00000543140 GRM5P41594 1212 aa17.2■□□□□ 0.34
COL4A1-204ENST00000543140 GPD2P43304 727 aa17.2■□□□□ 0.34
COL4A1-204ENST00000543140 BYSLQ13895 437 aaKnown RBP17.2■□□□□ 0.34
COL4A1-204ENST00000543140 TFDP3Q5H9I0 405 aa17.2■□□□□ 0.34
COL4A1-204ENST00000543140 MDM1Q8TC05 714 aa17.2■□□□□ 0.34
COL4A1-204ENST00000543140 TLCD1Q96CP7 247 aa17.2■□□□□ 0.34
COL4A1-204ENST00000543140 TRAIPQ9BWF2 469 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms