RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-210	ENST00000541488	DNAJB5	O75953	348 aa		4.99	□□□□□ -1.61
PRKDC-210	ENST00000541488	PIM1	P11309	404 aa	Predicted RBP	4.99	□□□□□ -1.61
PRKDC-210	ENST00000541488	JUP	P14923	745 aa		4.99	□□□□□ -1.61
PRKDC-210	ENST00000541488	NDUFB7	P17568	137 aa		4.99	□□□□□ -1.61
PRKDC-210	ENST00000541488	NKX6-1	P78426	367 aa	Predicted RBP	4.99	□□□□□ -1.61
PRKDC-210	ENST00000541488	ARHGAP40	Q5TG30	622 aa		4.99	□□□□□ -1.61
PRKDC-210	ENST00000541488	FAM160B1	Q5W0V3	765 aa		4.99	□□□□□ -1.61
PRKDC-210	ENST00000541488	LAYN	Q6UX15	382 aa		4.99	□□□□□ -1.61
PRKDC-210	ENST00000541488	DPF1	Q92782	380 aa		4.99	□□□□□ -1.61
PRKDC-210	ENST00000541488	ALG8	Q9BVK2	526 aa		4.99	□□□□□ -1.61
PRKDC-210	ENST00000541488	SLC29A3	Q9BZD2	475 aa		4.99	□□□□□ -1.61
PRKDC-210	ENST00000541488	ARHGEF3	Q9NR81	526 aa		4.99	□□□□□ -1.61
PRKDC-210	ENST00000541488	SH3BP4	Q9P0V3	963 aa		4.99	□□□□□ -1.61
PRKDC-210	ENST00000541488	HESX1	Q9UBX0	185 aa		4.99	□□□□□ -1.61
PRKDC-210	ENST00000541488	NOP58	Q9Y2X3	529 aa	Known RBP	4.99	□□□□□ -1.61
PRKDC-210	ENST00000541488	hCG_2014768	A0A024R1R8	64 aa		4.98	□□□□□ -1.61
PRKDC-210	ENST00000541488	CGB1	A6NKQ9	187 aa		4.98	□□□□□ -1.61
PRKDC-210	ENST00000541488	AP1G1	O43747	822 aa		4.98	□□□□□ -1.61
PRKDC-210	ENST00000541488	ALDH1L1	O75891	902 aa		4.98	□□□□□ -1.61
PRKDC-210	ENST00000541488	WT1	P19544	449 aa	Predicted RBP	4.98	□□□□□ -1.61
PRKDC-210	ENST00000541488	DRD4	P21917	467 aa		4.98	□□□□□ -1.61
PRKDC-210	ENST00000541488	FOXF2	Q12947	444 aa		4.98	□□□□□ -1.61
PRKDC-210	ENST00000541488	BMPR2	Q13873	1038 aa		4.98	□□□□□ -1.61
PRKDC-210	ENST00000541488	LONRF3	Q496Y0	759 aa		4.98	□□□□□ -1.61
PRKDC-210	ENST00000541488	PLAC9	Q5JTB6	97 aa		4.98	□□□□□ -1.61
PRKDC-210	ENST00000541488	FCRLB	Q6BAA4	426 aa		4.98	□□□□□ -1.61
PRKDC-210	ENST00000541488	MAVS	Q7Z434	540 aa		4.98	□□□□□ -1.61
PRKDC-210	ENST00000541488	SRRM1	Q8IYB3	904 aa	Known RBP	4.98	□□□□□ -1.61
PRKDC-210	ENST00000541488	PLBD2	Q8NHP8	589 aa		4.98	□□□□□ -1.61
PRKDC-210	ENST00000541488	HPS3	Q969F9	1004 aa		4.98	□□□□□ -1.61
PRKDC-210	ENST00000541488	SARS2	Q9NP81	518 aa	Known RBP	4.98	□□□□□ -1.61
PRKDC-210	ENST00000541488	ANKRD6	Q9Y2G4	727 aa		4.98	□□□□□ -1.61
PRKDC-210	ENST00000541488	AOX1	Q06278	1338 aa		4.97	□□□□□ -1.61
PRKDC-210	ENST00000541488	DNAJC9-AS1	A6NH13	148 aa		4.97	□□□□□ -1.61
PRKDC-210	ENST00000541488	GCOM1	H8Y6P7	765 aa	Predicted RBP	4.97	□□□□□ -1.61
PRKDC-210	ENST00000541488	hCG_1984214	I3L0E3	225 aa		4.97	□□□□□ -1.61
PRKDC-210	ENST00000541488	SMIM22	K7EJ46	135 aa		4.97	□□□□□ -1.61
PRKDC-210	ENST00000541488	OFD1	O75665	1012 aa		4.97	□□□□□ -1.61
PRKDC-210	ENST00000541488	SOAT2	O75908	522 aa		4.97	□□□□□ -1.61
PRKDC-210	ENST00000541488	FES	P07332	822 aa		4.97	□□□□□ -1.61
PRKDC-210	ENST00000541488	GRP	P07492	148 aa		4.97	□□□□□ -1.61
PRKDC-210	ENST00000541488	ENG	P17813	658 aa		4.97	□□□□□ -1.61
PRKDC-210	ENST00000541488	PCSK6	P29122	969 aa		4.97	□□□□□ -1.61
PRKDC-210	ENST00000541488	LIPA	P38571	399 aa		4.97	□□□□□ -1.61
PRKDC-210	ENST00000541488	ANAPC15	P60006	121 aa		4.97	□□□□□ -1.61
PRKDC-210	ENST00000541488	TREML2	Q5T2D2	321 aa		4.97	□□□□□ -1.61
PRKDC-210	ENST00000541488	ZNF782	Q6ZMW2	699 aa	Predicted RBP	4.97	□□□□□ -1.61
PRKDC-210	ENST00000541488	ZNF551	Q7Z340	670 aa	Predicted RBP	4.97	□□□□□ -1.61
PRKDC-210	ENST00000541488	TPH2	Q8IWU9	490 aa		4.97	□□□□□ -1.61
PRKDC-210	ENST00000541488	HASPIN	Q8TF76	798 aa		4.97	□□□□□ -1.61
PRKDC-210	ENST00000541488	ATRIP	Q8WXE1	791 aa		4.97	□□□□□ -1.61
PRKDC-210	ENST00000541488	DDX17	Q92841	729 aa	Known RBP	4.97	□□□□□ -1.61
PRKDC-210	ENST00000541488	CDK5RAP3	Q96JB5	506 aa		4.97	□□□□□ -1.61
PRKDC-210	ENST00000541488	FAM167A	Q96KS9	214 aa		4.97	□□□□□ -1.61
PRKDC-210	ENST00000541488	NT5C1B	Q96P26	610 aa		4.97	□□□□□ -1.61
PRKDC-210	ENST00000541488	P2RX7	Q99572	595 aa	Known RBP	4.97	□□□□□ -1.61
PRKDC-210	ENST00000541488	SERGEF	Q9UGK8	458 aa		4.97	□□□□□ -1.61
PRKDC-210	ENST00000541488	STXBP5L	Q9Y2K9	1186 aa		4.97	□□□□□ -1.61
PRKDC-210	ENST00000541488	MRPS17	Q9Y2R5	130 aa	Known RBP	4.97	□□□□□ -1.61
PRKDC-210	ENST00000541488	WDR91	A4D1P6	747 aa		4.96	□□□□□ -1.62
PRKDC-210	ENST00000541488	WIPF3	A6NGB9	483 aa		4.96	□□□□□ -1.62
PRKDC-210	ENST00000541488	AKAP5	P24588	427 aa		4.96	□□□□□ -1.62
PRKDC-210	ENST00000541488	CYP2C18	P33260	490 aa		4.96	□□□□□ -1.62
PRKDC-210	ENST00000541488	PXN	P49023	591 aa	Predicted RBP	4.96	□□□□□ -1.62
PRKDC-210	ENST00000541488	ALDH9A1	P49189	494 aa		4.96	□□□□□ -1.62
PRKDC-210	ENST00000541488	PDE1A	P54750	535 aa		4.96	□□□□□ -1.62
PRKDC-210	ENST00000541488	TCF15	Q12870	199 aa		4.96	□□□□□ -1.62
PRKDC-210	ENST00000541488	IQCB1	Q15051	598 aa		4.96	□□□□□ -1.62
PRKDC-210	ENST00000541488	RGS7BP	Q6MZT1	257 aa	Predicted RBP	4.96	□□□□□ -1.62
PRKDC-210	ENST00000541488	COL23A1	Q86Y22	540 aa	Predicted RBP	4.96	□□□□□ -1.62
PRKDC-210	ENST00000541488	FAM109A	Q8N4B1	249 aa		4.96	□□□□□ -1.62
PRKDC-210	ENST00000541488	PPP1R35	Q8TAP8	253 aa		4.96	□□□□□ -1.62
PRKDC-210	ENST00000541488	SERTAD4	Q9NUC0	356 aa		4.96	□□□□□ -1.62
PRKDC-210	ENST00000541488	ZNF180	Q9UJW8	692 aa		4.96	□□□□□ -1.62
PRKDC-210	ENST00000541488	CCNL1	Q9UK58	526 aa	Predicted RBP	4.96	□□□□□ -1.62
PRKDC-210	ENST00000541488	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	4.96	□□□□□ -1.62
PRKDC-210	ENST00000541488		H0YIZ8	118 aa		4.95	□□□□□ -1.62
PRKDC-210	ENST00000541488	NXPH3	O95157	252 aa		4.95	□□□□□ -1.62
PRKDC-210	ENST00000541488	PRKCG	P05129	697 aa		4.95	□□□□□ -1.62
PRKDC-210	ENST00000541488	FAM163B	P0C2L3	166 aa		4.95	□□□□□ -1.62
PRKDC-210	ENST00000541488	NHLRC4	P0CG21	123 aa	Predicted RBP	4.95	□□□□□ -1.62
PRKDC-210	ENST00000541488	MPG	P29372	298 aa		4.95	□□□□□ -1.62
PRKDC-210	ENST00000541488	UCP3	P55916	312 aa		4.95	□□□□□ -1.62
PRKDC-210	ENST00000541488	TFF2	Q03403	129 aa		4.95	□□□□□ -1.62
PRKDC-210	ENST00000541488	GRM1	Q13255	1194 aa		4.95	□□□□□ -1.62
PRKDC-210	ENST00000541488	TTF1	Q15361	905 aa	Predicted RBP	4.95	□□□□□ -1.62
PRKDC-210	ENST00000541488	SRSF7	Q16629	238 aa	Known RBP eCLIP	4.95	□□□□□ -1.62
PRKDC-210	ENST00000541488	AMOT	Q4VCS5	1084 aa		4.95	□□□□□ -1.62
PRKDC-210	ENST00000541488	ATAT1	Q5SQI0	421 aa		4.95	□□□□□ -1.62
PRKDC-210	ENST00000541488	ICE2	Q659A1	982 aa		4.95	□□□□□ -1.62
PRKDC-210	ENST00000541488	NAPRT	Q6XQN6	538 aa		4.95	□□□□□ -1.62
PRKDC-210	ENST00000541488	ZNF280B	Q86YH2	543 aa		4.95	□□□□□ -1.62
PRKDC-210	ENST00000541488	LRRC71	Q8N4P6	559 aa		4.95	□□□□□ -1.62
PRKDC-210	ENST00000541488	FANCB	Q8NB91	859 aa		4.95	□□□□□ -1.62
PRKDC-210	ENST00000541488	DIS3L	Q8TF46	1054 aa	Known RBP	4.95	□□□□□ -1.62
PRKDC-210	ENST00000541488	STAG1	Q8WVM7	1258 aa		4.95	□□□□□ -1.62
PRKDC-210	ENST00000541488	XAGE5	Q8WWM1	108 aa		4.95	□□□□□ -1.62
PRKDC-210	ENST00000541488	JPH3	Q8WXH2	748 aa	Predicted RBP	4.95	□□□□□ -1.62
PRKDC-210	ENST00000541488	ATG4A	Q8WYN0	398 aa		4.95	□□□□□ -1.62
PRKDC-210	ENST00000541488	R3HDM4	Q96D70	268 aa		4.95	□□□□□ -1.62

Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms