RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 R3HCC1Q9Y3T6 440 aaKnown RBP9□□□□□ -0.97
CHD4-208ENST00000540960 NOC2LQ9Y3T9 749 aaKnown RBP9□□□□□ -0.97
CHD4-208ENST00000540960 TRPV2Q9Y5S1 764 aa9□□□□□ -0.97
CHD4-208ENST00000540960 ADGRG1Q9Y653 693 aa9□□□□□ -0.97
CHD4-208ENST00000540960 EML5Q05BV3 1969 aa9□□□□□ -0.97
CHD4-208ENST00000540960 MTCL1Q9Y4B5 1905 aaKnown RBP8.99□□□□□ -0.97
CHD4-208ENST00000540960 SPAARA0A1B0GVQ0 90 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 DENND3A2RUS2 1198 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 FAM221BA6H8Z2 402 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 K7ESF4 209 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 MAP3K13O43283 966 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 TGFB1I1O43294 461 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 AKR1B10O60218 316 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 HBP1O60381 514 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 NDUFA10O95299 355 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 SPATA31D3P0C874 917 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 FERP16591 822 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 CSRP1P21291 193 aaKnown RBP8.99□□□□□ -0.97
CHD4-208ENST00000540960 MARK3P27448 753 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 NMT1P30419 496 aaKnown RBP8.99□□□□□ -0.97
CHD4-208ENST00000540960 CASQ1P31415 396 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 NPTX2P47972 431 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 CXCL12P48061 93 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 PEX3P56589 373 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 BCAR1P56945 870 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 MCCD1P59942 119 aaPredicted RBP8.99□□□□□ -0.97
CHD4-208ENST00000540960 IGBP1P78318 339 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 KIF5AQ12840 1032 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 PPFIA1Q13136 1202 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 EMC2Q15006 297 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 SURF1Q15526 300 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 KYAT1Q16773 422 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 ZNF484Q5JVG2 852 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 CLLU1OSQ5K130 101 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 TCERG1LQ5VWI1 586 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 ZNF852Q6ZMS4 543 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 SPATA31D4Q6ZUB0 917 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 KIAA1328Q86T90 577 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 KBTBD6Q86V97 674 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 LONP2Q86WA8 852 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 TMEM139Q8IV31 216 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 ZBTB8OSQ8IWT0 167 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 LRRC43Q8N309 656 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 MYRIPQ8NFW9 859 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 MDM1Q8TC05 714 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 TMEM40Q8WWA1 233 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 SPAG5Q96R06 1193 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 UBL7Q96S82 380 aaPredicted RBP8.99□□□□□ -0.97
CHD4-208ENST00000540960 KXD1Q9BQD3 176 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 TTYH3Q9C0H2 523 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 DHX33Q9H6R0 707 aaKnown RBP8.99□□□□□ -0.97
CHD4-208ENST00000540960 TRMT1Q9NXH9 659 aaKnown RBP8.99□□□□□ -0.97
CHD4-208ENST00000540960 ERAP1Q9NZ08 941 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.99□□□□□ -0.97
CHD4-208ENST00000540960 AIPL1Q9NZN9 384 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 WRAP73Q9P2S5 460 aaPredicted RBP8.99□□□□□ -0.97
CHD4-208ENST00000540960 ATP8B3O60423 1300 aa8.99□□□□□ -0.97
CHD4-208ENST00000540960 SPTAN1Q13813 2472 aaKnown RBP8.98□□□□□ -0.97
CHD4-208ENST00000540960 SFI1A8K8P3 1242 aa8.98□□□□□ -0.97
CHD4-208ENST00000540960 K7ERI5 159 aa8.98□□□□□ -0.97
CHD4-208ENST00000540960 TK2O00142 265 aa8.98□□□□□ -0.97
CHD4-208ENST00000540960 MAFO75444 373 aaPredicted RBP8.98□□□□□ -0.97
CHD4-208ENST00000540960 AKAP3O75969 853 aa8.98□□□□□ -0.97
CHD4-208ENST00000540960 TUBBP07437 444 aa8.98□□□□□ -0.97
CHD4-208ENST00000540960 TMOD1P28289 359 aa8.98□□□□□ -0.97
CHD4-208ENST00000540960 CNR2P34972 360 aa8.98□□□□□ -0.97
CHD4-208ENST00000540960 MPLP40238 635 aa8.98□□□□□ -0.97
CHD4-208ENST00000540960 STAT1P42224 750 aa8.98□□□□□ -0.97
CHD4-208ENST00000540960 CCR3P51677 355 aa8.98□□□□□ -0.97
CHD4-208ENST00000540960 VAMP7P51809 220 aa8.98□□□□□ -0.97
CHD4-208ENST00000540960 CASP5P51878 434 aa8.98□□□□□ -0.97
CHD4-208ENST00000540960 GNG11P61952 73 aa8.98□□□□□ -0.97
CHD4-208ENST00000540960 POU5F1Q01860 360 aaKnown RBP8.98□□□□□ -0.97
CHD4-208ENST00000540960 SP4Q02446 784 aa8.98□□□□□ -0.97
CHD4-208ENST00000540960 POU5F1BQ06416 359 aa8.98□□□□□ -0.97
CHD4-208ENST00000540960 BFSP1Q12934 665 aa8.98□□□□□ -0.97
CHD4-208ENST00000540960 BMS1Q14692 1282 aaKnown RBP8.98□□□□□ -0.97
CHD4-208ENST00000540960 ASIC2Q16515 512 aa8.98□□□□□ -0.97
CHD4-208ENST00000540960 DCAF17Q5H9S7 520 aaPredicted RBP8.98□□□□□ -0.97
CHD4-208ENST00000540960 PPP1R2P3Q6NXS1 205 aa8.98□□□□□ -0.97
CHD4-208ENST00000540960 ZPBP2Q6X784 338 aa8.98□□□□□ -0.97
CHD4-208ENST00000540960 RRAGAQ7L523 313 aa8.98□□□□□ -0.97
CHD4-208ENST00000540960 ENOSF1Q7L5Y1 443 aa8.98□□□□□ -0.97
CHD4-208ENST00000540960 DDX53Q86TM3 631 aaKnown RBP8.98□□□□□ -0.97
CHD4-208ENST00000540960 DAW1Q8N136 415 aa8.98□□□□□ -0.97
CHD4-208ENST00000540960 RNF10Q8N5U6 811 aaKnown RBP8.98□□□□□ -0.97
CHD4-208ENST00000540960 TMEM161BQ8NDZ6 487 aa8.98□□□□□ -0.97
CHD4-208ENST00000540960 PSPC1Q8WXF1 523 aaKnown RBP8.98□□□□□ -0.97
CHD4-208ENST00000540960 BICD1Q96G01 975 aa8.98□□□□□ -0.97
CHD4-208ENST00000540960 TMEM169Q96HH4 297 aa8.98□□□□□ -0.97
CHD4-208ENST00000540960 FIZ1Q96SL8 496 aa8.98□□□□□ -0.97
CHD4-208ENST00000540960 NHEJ1Q9H9Q4 299 aaPredicted RBP8.98□□□□□ -0.97
CHD4-208ENST00000540960 LMAN1LQ9HAT1 526 aa8.98□□□□□ -0.97
CHD4-208ENST00000540960 C1orf112Q9NSG2 853 aa8.98□□□□□ -0.97
CHD4-208ENST00000540960 FAM207AQ9NSI2 230 aaPredicted RBP8.98□□□□□ -0.97
CHD4-208ENST00000540960 ST3GAL5Q9UNP4 418 aa8.98□□□□□ -0.97
CHD4-208ENST00000540960 USP20Q9Y2K6 914 aa8.98□□□□□ -0.97
CHD4-208ENST00000540960 COL1A2P08123 1366 aa8.98□□□□□ -0.97
CHD4-208ENST00000540960 GSTTP1A0A1W2PQM5 241 aa8.97□□□□□ -0.97
CHD4-208ENST00000540960 CTAGE9A4FU28 777 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms