RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 DCAF4L1Q3SXM0 396 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 NUGGCQ68CJ6 796 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 MON1BQ7L1V2 547 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 C3orf20Q8ND61 904 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 ZNF526Q8TF50 670 aaPredicted RBP11.34□□□□□ -0.59
CLIP1-213ENST00000540338 LRRC4Q9HBW1 653 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 RBPJLQ9UBG7 517 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 TCRBV7S2A1N4TA0A589 114 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 HUS1O60921 280 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 PTK6Q13882 451 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 ZKSCAN8Q15776 578 aaPredicted RBP11.34□□□□□ -0.59
CLIP1-213ENST00000540338 JADE1Q6IE81 842 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 PLEKHA7Q6IQ23 1121 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 FOXR1Q6PIV2 292 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 MFSD7Q6UXD7 560 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 PLEKHH3Q7Z736 793 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 CEP120Q8N960 986 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 SYT11Q9BT88 431 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 HEY1Q9Y5J3 304 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 F8VP50 259 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 HGSO14964 777 aaPredicted RBP11.34□□□□□ -0.59
CLIP1-213ENST00000540338 MEFVO15553 781 aaPredicted RBP11.34□□□□□ -0.59
CLIP1-213ENST00000540338 MMP8P22894 467 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 ARL4AP40617 200 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 ADCYAP1R1P41586 468 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 ZBTB16Q05516 673 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 HIF1AQ16665 826 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 KIZQ2M2Z5 673 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 TSHZ1Q6ZSZ6 1077 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 CPSF3Q9UKF6 684 aaKnown RBP11.34□□□□□ -0.59
CLIP1-213ENST00000540338 NENFQ9UMX5 172 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 PIN4Q9Y237 131 aaKnown RBP11.34□□□□□ -0.59
CLIP1-213ENST00000540338 TTC4O95801 387 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 INHBAP08476 426 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 GPD1P21695 349 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 BCAR1P56945 870 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 RPL7AP62424 266 aaKnown RBP11.34□□□□□ -0.59
CLIP1-213ENST00000540338 ROR1Q01973 937 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 LRRC14Q15048 493 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 TWF2Q6IBS0 349 aaKnown RBP11.34□□□□□ -0.59
CLIP1-213ENST00000540338 CASC4Q6P4E1 433 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 NOTUMQ6P988 496 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 RNF169Q8NCN4 708 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 LRRC8CQ8TDW0 803 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 ART4Q93070 314 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 RNF34Q969K3 372 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 FAF2Q96CS3 445 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 PGM2Q96G03 612 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 ZNF560Q96MR9 790 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 ACTR5Q9H9F9 607 aaPredicted RBP11.34□□□□□ -0.59
CLIP1-213ENST00000540338 RSAD1Q9HA92 442 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 SYNJ2BP-COX16A0A087WUM0 186 aa11.33□□□□□ -0.6
CLIP1-213ENST00000540338 LOC102724159A0A0B4J2E5 919 aa11.33□□□□□ -0.6
CLIP1-213ENST00000540338 B4GALT4O60513 344 aa11.33□□□□□ -0.6
CLIP1-213ENST00000540338 MSCO60682 206 aa11.33□□□□□ -0.6
CLIP1-213ENST00000540338 CA4P22748 312 aa11.33□□□□□ -0.6
CLIP1-213ENST00000540338 TAS2R40P59535 323 aa11.33□□□□□ -0.6
CLIP1-213ENST00000540338 ZNF268Q14587 947 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-213ENST00000540338 PWP2Q15269 919 aaKnown RBP11.33□□□□□ -0.6
CLIP1-213ENST00000540338 GRIK4Q16099 956 aa11.33□□□□□ -0.6
CLIP1-213ENST00000540338 KCNT1Q5JUK3 1230 aa11.33□□□□□ -0.6
CLIP1-213ENST00000540338 GJC2Q5T442 439 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-213ENST00000540338 LRRC38Q5VT99 294 aa11.33□□□□□ -0.6
CLIP1-213ENST00000540338 DAB2IPQ5VWQ8 1189 aa11.33□□□□□ -0.6
CLIP1-213ENST00000540338 TTC27Q6P3X3 843 aa11.33□□□□□ -0.6
CLIP1-213ENST00000540338 ZC3H18Q86VM9 953 aaKnown RBP11.33□□□□□ -0.6
CLIP1-213ENST00000540338 EMC1Q8N766 993 aa11.33□□□□□ -0.6
CLIP1-213ENST00000540338 RAPGEF5Q92565 580 aa11.33□□□□□ -0.6
CLIP1-213ENST00000540338 COX16Q9P0S2 106 aa11.33□□□□□ -0.6
CLIP1-213ENST00000540338 NUDT17P0C025 328 aa11.33□□□□□ -0.6
CLIP1-213ENST00000540338 VSIG1Q86XK7 387 aa11.33□□□□□ -0.6
CLIP1-213ENST00000540338 CCDC63Q8NA47 563 aa11.33□□□□□ -0.6
CLIP1-213ENST00000540338 MLXIPLQ9NP71 852 aa11.33□□□□□ -0.6
CLIP1-213ENST00000540338 ITGA11Q9UKX5 1188 aa11.33□□□□□ -0.6
CLIP1-213ENST00000540338 MROH7Q68CQ1 1323 aa11.33□□□□□ -0.6
CLIP1-213ENST00000540338 GRAP2O75791 330 aa11.33□□□□□ -0.6
CLIP1-213ENST00000540338 NFICP08651 508 aa11.33□□□□□ -0.6
CLIP1-213ENST00000540338 ADORA2BP29275 332 aa11.33□□□□□ -0.6
CLIP1-213ENST00000540338 MAP1SQ66K74 1059 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-213ENST00000540338 DENND1BQ6P3S1 775 aa11.33□□□□□ -0.6
CLIP1-213ENST00000540338 ATP11CQ8NB49 1132 aa11.33□□□□□ -0.6
CLIP1-213ENST00000540338 DDX1Q92499 740 aaKnown RBP11.33□□□□□ -0.6
CLIP1-213ENST00000540338 PRMT1Q99873 361 aaKnown RBP11.33□□□□□ -0.6
CLIP1-213ENST00000540338 ABHD16BQ9H3Z7 469 aa11.33□□□□□ -0.6
CLIP1-213ENST00000540338 FAM49BQ9NUQ9 324 aa11.33□□□□□ -0.6
CLIP1-213ENST00000540338 BARX2Q9UMQ3 279 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-213ENST00000540338 MAD1L1Q9Y6D9 718 aa11.33□□□□□ -0.6
CLIP1-213ENST00000540338 NRXN2Q9P2S2 1712 aa11.33□□□□□ -0.6
CLIP1-213ENST00000540338 TRIM66O15016 1216 aa11.32□□□□□ -0.6
CLIP1-213ENST00000540338 STBD1O95210 358 aa11.32□□□□□ -0.6
CLIP1-213ENST00000540338 RBP3P10745 1247 aa11.32□□□□□ -0.6
CLIP1-213ENST00000540338 PTGIRP43119 386 aa11.32□□□□□ -0.6
CLIP1-213ENST00000540338 CORO7P57737 925 aa11.32□□□□□ -0.6
CLIP1-213ENST00000540338 TARBP2Q15633 366 aaKnown RBP11.32□□□□□ -0.6
CLIP1-213ENST00000540338 GOLGA7BQ2TAP0 167 aa11.32□□□□□ -0.6
CLIP1-213ENST00000540338 PDZD4Q76G19 769 aaPredicted RBP11.32□□□□□ -0.6
CLIP1-213ENST00000540338 CPNE8Q86YQ8 564 aa11.32□□□□□ -0.6
CLIP1-213ENST00000540338 PCYT2Q99447 389 aa11.32□□□□□ -0.6
CLIP1-213ENST00000540338 FRMD8P1Q9BZ68 369 aaPredicted RBP11.32□□□□□ -0.6
CLIP1-213ENST00000540338 RNPEPQ9H4A4 650 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms