RNA–Protein interactions for RNA: ENST00000539442.1

LEMD3-202, Transcript of LEM domain containing 3, humanhuman

TSL 2

Gene LEMD3, Length 932 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LEMD3-202ENST00000539442 INSL6Q9Y581 213 aa11.32□□□□□ -0.6
LEMD3-202ENST00000539442 NME7Q9Y5B8 376 aa11.32□□□□□ -0.6
LEMD3-202ENST00000539442 PCDHA13Q9Y5I0 950 aa11.32□□□□□ -0.6
LEMD3-202ENST00000539442 SLC4A7Q9Y6M7 1214 aa11.32□□□□□ -0.6
LEMD3-202ENST00000539442 O00370 1275 aa11.31□□□□□ -0.6
LEMD3-202ENST00000539442 KRT86O43790 486 aa11.31□□□□□ -0.6
LEMD3-202ENST00000539442 RTN2O75298 545 aa11.31□□□□□ -0.6
LEMD3-202ENST00000539442 H2AFZP0C0S5 128 aa11.31□□□□□ -0.6
LEMD3-202ENST00000539442 UNGP13051 313 aaPredicted RBP11.31□□□□□ -0.6
LEMD3-202ENST00000539442 IGFBP6P24592 240 aaPredicted RBP11.31□□□□□ -0.6
LEMD3-202ENST00000539442 CDH5P33151 784 aaPredicted RBP11.31□□□□□ -0.6
LEMD3-202ENST00000539442 PPM1AP35813 382 aa11.31□□□□□ -0.6
LEMD3-202ENST00000539442 CENPCQ03188 943 aa11.31□□□□□ -0.6
LEMD3-202ENST00000539442 YWHAHQ04917 246 aaPredicted RBP11.31□□□□□ -0.6
LEMD3-202ENST00000539442 CLEC16AQ2KHT3 1053 aa11.31□□□□□ -0.6
LEMD3-202ENST00000539442 SPOUT1Q5T280 376 aaKnown RBP11.31□□□□□ -0.6
LEMD3-202ENST00000539442 OVOS1Q6IE37 1185 aa11.31□□□□□ -0.6
LEMD3-202ENST00000539442 ACAD10Q6JQN1 1059 aa11.31□□□□□ -0.6
LEMD3-202ENST00000539442 FAM117BQ6P1L5 589 aa11.31□□□□□ -0.6
LEMD3-202ENST00000539442 FUT10Q6P4F1 479 aa11.31□□□□□ -0.6
LEMD3-202ENST00000539442 KCNT2Q6UVM3 1135 aa11.31□□□□□ -0.6
LEMD3-202ENST00000539442 LCLAT1Q6UWP7 414 aa11.31□□□□□ -0.6
LEMD3-202ENST00000539442 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.31□□□□□ -0.6
LEMD3-202ENST00000539442 H2AFVQ71UI9 128 aa11.31□□□□□ -0.6
LEMD3-202ENST00000539442 ACOT1Q86TX2 421 aa11.31□□□□□ -0.6
LEMD3-202ENST00000539442 HERC6Q8IVU3 1022 aa11.31□□□□□ -0.6
LEMD3-202ENST00000539442 THEM5Q8N1Q8 247 aa11.31□□□□□ -0.6
LEMD3-202ENST00000539442 B3GALNT2Q8NCR0 500 aa11.31□□□□□ -0.6
LEMD3-202ENST00000539442 TMEM35BQ8NCS4 154 aa11.31□□□□□ -0.6
LEMD3-202ENST00000539442 TFAP2BQ92481 460 aa11.31□□□□□ -0.6
LEMD3-202ENST00000539442 PPP1R13BQ96KQ4 1090 aa11.31□□□□□ -0.6
LEMD3-202ENST00000539442 ZNF558Q96NG5 402 aa11.31□□□□□ -0.6
LEMD3-202ENST00000539442 PCDHB18PQ96TA0 734 aa11.31□□□□□ -0.6
LEMD3-202ENST00000539442 SYT15Q9BQS2 421 aa11.31□□□□□ -0.6
LEMD3-202ENST00000539442 ZSWIM1Q9BR11 485 aa11.31□□□□□ -0.6
LEMD3-202ENST00000539442 ACBD6Q9BR61 282 aa11.31□□□□□ -0.6
LEMD3-202ENST00000539442 OXCT2Q9BYC2 517 aaPredicted RBP11.31□□□□□ -0.6
LEMD3-202ENST00000539442 LHX5Q9H2C1 402 aa11.31□□□□□ -0.6
LEMD3-202ENST00000539442 AAASQ9NRG9 546 aa11.31□□□□□ -0.6
LEMD3-202ENST00000539442 CXXC1Q9P0U4 656 aaPredicted RBP11.31□□□□□ -0.6
LEMD3-202ENST00000539442 STK39Q9UEW8 545 aa11.31□□□□□ -0.6
LEMD3-202ENST00000539442 ANKRD62A6NC57 917 aa11.3□□□□□ -0.6
LEMD3-202ENST00000539442 BTNL10A8MVZ5 291 aa11.3□□□□□ -0.6
LEMD3-202ENST00000539442 F8W810 466 aa11.3□□□□□ -0.6
LEMD3-202ENST00000539442 I3L4J1 428 aa11.3□□□□□ -0.6
LEMD3-202ENST00000539442 PJA2O43164 708 aa11.3□□□□□ -0.6
LEMD3-202ENST00000539442 ZNF500O60304 480 aaPredicted RBP11.3□□□□□ -0.6
LEMD3-202ENST00000539442 OAZ2O95190 189 aa11.3□□□□□ -0.6
LEMD3-202ENST00000539442 EFEMP2O95967 443 aa11.3□□□□□ -0.6
LEMD3-202ENST00000539442 CALCAP01258 141 aa11.3□□□□□ -0.6
LEMD3-202ENST00000539442 PDGFRBP09619 1106 aa11.3□□□□□ -0.6
LEMD3-202ENST00000539442 ATP2A2P16615 1042 aaKnown RBP11.3□□□□□ -0.6
LEMD3-202ENST00000539442 PTPN1P18031 435 aaKnown RBP11.3□□□□□ -0.6
LEMD3-202ENST00000539442 FGFR3P22607 806 aa11.3□□□□□ -0.6
LEMD3-202ENST00000539442 LMO2P25791 158 aa11.3□□□□□ -0.6
LEMD3-202ENST00000539442 NSFP46459 744 aaKnown RBP11.3□□□□□ -0.6
LEMD3-202ENST00000539442 NOMO3P69849 1222 aa11.3□□□□□ -0.6
LEMD3-202ENST00000539442 KIF5AQ12840 1032 aa11.3□□□□□ -0.6
LEMD3-202ENST00000539442 ORC1Q13415 861 aa11.3□□□□□ -0.6
LEMD3-202ENST00000539442 MAPRE1Q15691 268 aaKnown RBP11.3□□□□□ -0.6
LEMD3-202ENST00000539442 ARHGAP29Q52LW3 1261 aa11.3□□□□□ -0.6
LEMD3-202ENST00000539442 TMCO2Q7Z6W1 182 aaPredicted RBP11.3□□□□□ -0.6
LEMD3-202ENST00000539442 PALB2Q86YC2 1186 aa11.3□□□□□ -0.6
LEMD3-202ENST00000539442 REXO1L1PQ8IX06 675 aa11.3□□□□□ -0.6
LEMD3-202ENST00000539442 RNF168Q8IYW5 571 aaPredicted RBP11.3□□□□□ -0.6
LEMD3-202ENST00000539442 SLC39A11Q8N1S5 342 aa11.3□□□□□ -0.6
LEMD3-202ENST00000539442 FIBCD1Q8N539 461 aa11.3□□□□□ -0.6
LEMD3-202ENST00000539442 COLGALT1Q8NBJ5 622 aa11.3□□□□□ -0.6
LEMD3-202ENST00000539442 CYFIP2Q96F07 1278 aa11.3□□□□□ -0.6
LEMD3-202ENST00000539442 TRIM11Q96F44 468 aa11.3□□□□□ -0.6
LEMD3-202ENST00000539442 IGSF21Q96ID5 467 aa11.3□□□□□ -0.6
LEMD3-202ENST00000539442 RAD9AQ99638 391 aa11.3□□□□□ -0.6
LEMD3-202ENST00000539442 ZBED2Q9BTP6 218 aa11.3□□□□□ -0.6
LEMD3-202ENST00000539442 DPEP3Q9H4B8 488 aa11.3□□□□□ -0.6
LEMD3-202ENST00000539442 TRMT1Q9NXH9 659 aaKnown RBP11.3□□□□□ -0.6
LEMD3-202ENST00000539442 HESX1Q9UBX0 185 aa11.3□□□□□ -0.6
LEMD3-202ENST00000539442 TSPAN16Q9UKR8 245 aa11.3□□□□□ -0.6
LEMD3-202ENST00000539442 TIMM13Q9Y5L4 95 aaPredicted RBP11.3□□□□□ -0.6
LEMD3-202ENST00000539442 MRPL42Q9Y6G3 142 aaKnown RBP11.3□□□□□ -0.6
LEMD3-202ENST00000539442 M0QYV0 167 aa11.29□□□□□ -0.6
LEMD3-202ENST00000539442 HCRTO43612 131 aa11.29□□□□□ -0.6
LEMD3-202ENST00000539442 MICAL2O94851 1124 aa11.29□□□□□ -0.6
LEMD3-202ENST00000539442 TMEM253P0C7T8 217 aa11.29□□□□□ -0.6
LEMD3-202ENST00000539442 SETSIPP0DME0 302 aa11.29□□□□□ -0.6
LEMD3-202ENST00000539442 MYBL1P10243 752 aa11.29□□□□□ -0.6
LEMD3-202ENST00000539442 TKTP29401 623 aaKnown RBP11.29□□□□□ -0.6
LEMD3-202ENST00000539442 MAGEA10P43363 369 aaPredicted RBP11.29□□□□□ -0.6
LEMD3-202ENST00000539442 PSEN1P49768 467 aa11.29□□□□□ -0.6
LEMD3-202ENST00000539442 TSPY1Q01534 308 aa11.29□□□□□ -0.6
LEMD3-202ENST00000539442 MRPL58Q14197 206 aaKnown RBP11.29□□□□□ -0.6
LEMD3-202ENST00000539442 INTS6LQ5JSJ4 861 aaKnown RBP11.29□□□□□ -0.6
LEMD3-202ENST00000539442 PPP1R26Q5T8A7 1209 aaPredicted RBP11.29□□□□□ -0.6
LEMD3-202ENST00000539442 FAM171A1Q5VUB5 890 aa11.29□□□□□ -0.6
LEMD3-202ENST00000539442 NAA35Q5VZE5 725 aa11.29□□□□□ -0.6
LEMD3-202ENST00000539442 ZNF280DQ6N043 979 aa11.29□□□□□ -0.6
LEMD3-202ENST00000539442 ANKS3Q6ZW76 656 aa11.29□□□□□ -0.6
LEMD3-202ENST00000539442 PHF13Q86YI8 300 aaPredicted RBP11.29□□□□□ -0.6
LEMD3-202ENST00000539442 C17orf53Q8N3J3 647 aaPredicted RBP11.29□□□□□ -0.6
LEMD3-202ENST00000539442 C12orf29Q8N999 325 aa11.29□□□□□ -0.6
LEMD3-202ENST00000539442 MSANTD4Q8NCY6 345 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms