RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 CCL26Q9Y258 94 aa14.64□□□□□ -0.07
SS18-204ENST00000539244 PCDHB5Q9Y5E4 795 aa14.64□□□□□ -0.07
SS18-204ENST00000539244 EML5Q05BV3 1969 aa14.64□□□□□ -0.07
SS18-204ENST00000539244 ATG2BQ96BY7 2078 aa14.63□□□□□ -0.07
SS18-204ENST00000539244 OTOL1A6NHN0 477 aaPredicted RBP14.63□□□□□ -0.07
SS18-204ENST00000539244 ATG13O75143 517 aa14.63□□□□□ -0.07
SS18-204ENST00000539244 AKAP3O75969 853 aa14.63□□□□□ -0.07
SS18-204ENST00000539244 EPN2O95208 641 aa14.63□□□□□ -0.07
SS18-204ENST00000539244 CSH1P0DML2 217 aa14.63□□□□□ -0.07
SS18-204ENST00000539244 CSH2P0DML3 217 aa14.63□□□□□ -0.07
SS18-204ENST00000539244 PNPLA4P41247 253 aa14.63□□□□□ -0.07
SS18-204ENST00000539244 GRSF1Q12849 480 aaKnown RBP eCLIP14.63□□□□□ -0.07
SS18-204ENST00000539244 NFE2Q16621 373 aaPredicted RBP14.63□□□□□ -0.07
SS18-204ENST00000539244 BRAPQ7Z569 592 aa14.63□□□□□ -0.07
SS18-204ENST00000539244 MAB21L3Q8N8X9 362 aa14.63□□□□□ -0.07
SS18-204ENST00000539244 KRI1Q8N9T8 703 aaKnown RBP14.63□□□□□ -0.07
SS18-204ENST00000539244 ABCB6Q9NP58 842 aa14.63□□□□□ -0.07
SS18-204ENST00000539244 TDP1Q9NUW8 608 aa14.63□□□□□ -0.07
SS18-204ENST00000539244 TMLHEQ9NVH6 421 aa14.63□□□□□ -0.07
SS18-204ENST00000539244 SEL1LQ9UBV2 794 aa14.63□□□□□ -0.07
SS18-204ENST00000539244 RPP40O75818 363 aaKnown RBP14.62□□□□□ -0.07
SS18-204ENST00000539244 KRT37O76014 449 aa14.62□□□□□ -0.07
SS18-204ENST00000539244 CD2BP2O95400 341 aaKnown RBP14.62□□□□□ -0.07
SS18-204ENST00000539244 ZNF806P0C7X5 589 aa14.62□□□□□ -0.07
SS18-204ENST00000539244 MAP1BP46821 2468 aaKnown RBP14.62□□□□□ -0.07
SS18-204ENST00000539244 CDR1P51861 262 aa14.62□□□□□ -0.07
SS18-204ENST00000539244 AMPD2Q01433 879 aa14.62□□□□□ -0.07
SS18-204ENST00000539244 TSPY1Q01534 308 aa14.62□□□□□ -0.07
SS18-204ENST00000539244 BFSP1Q12934 665 aa14.62□□□□□ -0.07
SS18-204ENST00000539244 TRIM68Q6AZZ1 485 aa14.62□□□□□ -0.07
SS18-204ENST00000539244 CACNA2D4Q7Z3S7 1137 aa14.62□□□□□ -0.07
SS18-204ENST00000539244 MON1AQ86VX9 555 aa14.62□□□□□ -0.07
SS18-204ENST00000539244 SFR1Q86XK3 245 aa14.62□□□□□ -0.07
SS18-204ENST00000539244 CAMKK1Q8N5S9 505 aa14.62□□□□□ -0.07
SS18-204ENST00000539244 RASSF8Q8NHQ8 419 aa14.62□□□□□ -0.07
SS18-204ENST00000539244 RIN3Q8TB24 985 aa14.62□□□□□ -0.07
SS18-204ENST00000539244 SPATA18Q8TC71 538 aa14.62□□□□□ -0.07
SS18-204ENST00000539244 POMGNT1Q8WZA1 660 aa14.62□□□□□ -0.07
SS18-204ENST00000539244 TRMT2BQ96GJ1 504 aaKnown RBP14.62□□□□□ -0.07
SS18-204ENST00000539244 ZC3H10Q96K80 434 aaKnown RBP14.62□□□□□ -0.07
SS18-204ENST00000539244 MYRFLQ96LU7 910 aa14.62□□□□□ -0.07
SS18-204ENST00000539244 ACBD6Q9BR61 282 aa14.62□□□□□ -0.07
SS18-204ENST00000539244 EBF3Q9H4W6 596 aa14.62□□□□□ -0.07
SS18-204ENST00000539244 STK17AQ9UEE5 414 aa14.62□□□□□ -0.07
SS18-204ENST00000539244 PCDHGA5Q9Y5G8 931 aa14.62□□□□□ -0.07
SS18-204ENST00000539244 TM4SF5O14894 197 aa14.61□□□□□ -0.07
SS18-204ENST00000539244 TADA3O75528 432 aa14.61□□□□□ -0.07
SS18-204ENST00000539244 DRD1P21728 446 aa14.61□□□□□ -0.07
SS18-204ENST00000539244 PDGFRLQ15198 375 aa14.61□□□□□ -0.07
SS18-204ENST00000539244 SF3A1Q15459 793 aaKnown RBP14.61□□□□□ -0.07
SS18-204ENST00000539244 FBXO43Q4G163 708 aa14.61□□□□□ -0.07
SS18-204ENST00000539244 PLA2G2CQ5R387 149 aa14.61□□□□□ -0.07
SS18-204ENST00000539244 LARP1BQ659C4 914 aaKnown RBP14.61□□□□□ -0.07
SS18-204ENST00000539244 TXNDC8Q6A555 127 aa14.61□□□□□ -0.07
SS18-204ENST00000539244 BRSK2Q8IWQ3 736 aa14.61□□□□□ -0.07
SS18-204ENST00000539244 TMEM86AQ8N2M4 240 aa14.61□□□□□ -0.07
SS18-204ENST00000539244 PDCL2Q8N4E4 241 aa14.61□□□□□ -0.07
SS18-204ENST00000539244 CXorf38Q8TB03 319 aa14.61□□□□□ -0.07
SS18-204ENST00000539244 MRPS31Q92665 395 aaKnown RBP14.61□□□□□ -0.07
SS18-204ENST00000539244 PKMYT1Q99640 499 aa14.61□□□□□ -0.07
SS18-204ENST00000539244 ARRDC1-AS1Q9H2J1 176 aa14.61□□□□□ -0.07
SS18-204ENST00000539244 IKZF4Q9H2S9 585 aa14.61□□□□□ -0.07
SS18-204ENST00000539244 UXTQ9UBK9 157 aaPredicted RBP14.61□□□□□ -0.07
SS18-204ENST00000539244 SLC8A2Q9UPR5 921 aa14.61□□□□□ -0.07
SS18-204ENST00000539244 SMC3Q9UQE7 1217 aa14.61□□□□□ -0.07
SS18-204ENST00000539244 RNF40O75150 1001 aa14.6□□□□□ -0.07
SS18-204ENST00000539244 PRPF40AO75400 957 aaKnown RBP14.6□□□□□ -0.07
SS18-204ENST00000539244 NOL4O94818 638 aa14.6□□□□□ -0.07
SS18-204ENST00000539244 EGFP01133 1207 aa14.6□□□□□ -0.07
SS18-204ENST00000539244 ARSAP15289 507 aa14.6□□□□□ -0.07
SS18-204ENST00000539244 PXNP49023 591 aaPredicted RBP14.6□□□□□ -0.07
SS18-204ENST00000539244 GPR15P49685 360 aa14.6□□□□□ -0.07
SS18-204ENST00000539244 WNT7BP56706 349 aa14.6□□□□□ -0.07
SS18-204ENST00000539244 RPL10AP62906 217 aaKnown RBP14.6□□□□□ -0.07
SS18-204ENST00000539244 FAM160A1Q05DH4 1040 aa14.6□□□□□ -0.07
SS18-204ENST00000539244 AASDHQ4L235 1098 aaPredicted RBP14.6□□□□□ -0.07
SS18-204ENST00000539244 INTS6LQ5JSJ4 861 aaKnown RBP14.6□□□□□ -0.07
SS18-204ENST00000539244 L1TD1Q5T7N2 865 aaKnown RBP14.6□□□□□ -0.07
SS18-204ENST00000539244 IL31Q6EBC2 164 aa14.6□□□□□ -0.07
SS18-204ENST00000539244 CC2D1AQ6P1N0 951 aaPredicted RBP14.6□□□□□ -0.07
SS18-204ENST00000539244 KBTBD6Q86V97 674 aa14.6□□□□□ -0.07
SS18-204ENST00000539244 LRRC52Q8N7C0 313 aa14.6□□□□□ -0.07
SS18-204ENST00000539244 C1orf127Q8N9H9 656 aa14.6□□□□□ -0.07
SS18-204ENST00000539244 EXOC4Q96A65 974 aa14.6□□□□□ -0.07
SS18-204ENST00000539244 PI4K2AQ9BTU6 479 aa14.6□□□□□ -0.07
SS18-204ENST00000539244 TMEM206Q9H813 350 aa14.6□□□□□ -0.07
SS18-204ENST00000539244 FBRSL1Q9HCM7 1045 aaKnown RBP14.6□□□□□ -0.07
SS18-204ENST00000539244 GDAP2Q9NXN4 497 aa14.6□□□□□ -0.07
SS18-204ENST00000539244 DDX43Q9NXZ2 648 aaKnown RBP14.6□□□□□ -0.07
SS18-204ENST00000539244 L1RE1Q9UN81 338 aa14.6□□□□□ -0.07
SS18-204ENST00000539244 EXOC7Q9UPT5 735 aa14.6□□□□□ -0.07
SS18-204ENST00000539244 ANAPC1Q9H1A4 1944 aa14.6□□□□□ -0.07
SS18-204ENST00000539244 CHD8Q9HCK8 2581 aa14.6□□□□□ -0.07
SS18-204ENST00000539244 KIAA1549LQ6ZVL6 1849 aa14.59□□□□□ -0.07
SS18-204ENST00000539244 MYO16Q9Y6X6 1858 aa14.59□□□□□ -0.07
SS18-204ENST00000539244 ZFHX4Q86UP3 3567 aa14.59□□□□□ -0.07
SS18-204ENST00000539244 AXIN1O15169 862 aa14.59□□□□□ -0.07
SS18-204ENST00000539244 LDHAP00338 332 aaKnown RBP14.59□□□□□ -0.07
SS18-204ENST00000539244 ITGB3P05106 788 aa14.59□□□□□ -0.07
SS18-204ENST00000539244 CCDC192P0DO97 292 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms