RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 ITGALP20701 1170 aa3.26□□□□□ -1.89
SKA3-207ENST00000536239 FAPQ12884 760 aa3.26□□□□□ -1.89
SKA3-207ENST00000536239 STRN3Q13033 797 aa3.26□□□□□ -1.89
SKA3-207ENST00000536239 TRIM71Q2Q1W2 868 aaKnown RBP3.26□□□□□ -1.89
SKA3-207ENST00000536239 LEXMQ3ZCV2 418 aa3.26□□□□□ -1.89
SKA3-207ENST00000536239 VPS53Q5VIR6 699 aa3.26□□□□□ -1.89
SKA3-207ENST00000536239 TRIM72Q6ZMU5 477 aa3.26□□□□□ -1.89
SKA3-207ENST00000536239 C9orf47Q6ZRZ4 202 aa3.26□□□□□ -1.89
SKA3-207ENST00000536239 PDSS2Q86YH6 399 aa3.26□□□□□ -1.89
SKA3-207ENST00000536239 FAM118BQ9BPY3 351 aa3.26□□□□□ -1.89
SKA3-207ENST00000536239 PROCRQ9UNN8 238 aa3.26□□□□□ -1.89
SKA3-207ENST00000536239 SCAF8Q9UPN6 1271 aaKnown RBP3.26□□□□□ -1.89
SKA3-207ENST00000536239 PCDHA13Q9Y5I0 950 aa3.26□□□□□ -1.89
SKA3-207ENST00000536239 GPR45Q9Y5Y3 372 aa3.26□□□□□ -1.89
SKA3-207ENST00000536239 POC1B-GALNT4F8VUJ3 575 aa3.25□□□□□ -1.89
SKA3-207ENST00000536239 KRT86O43790 486 aa3.25□□□□□ -1.89
SKA3-207ENST00000536239 CDC45O75419 566 aa3.25□□□□□ -1.89
SKA3-207ENST00000536239 ABLIM3O94929 683 aa3.25□□□□□ -1.89
SKA3-207ENST00000536239 ENGP17813 658 aa3.25□□□□□ -1.89
SKA3-207ENST00000536239 MT3P25713 68 aa3.25□□□□□ -1.89
SKA3-207ENST00000536239 LIPAP38571 399 aa3.25□□□□□ -1.89
SKA3-207ENST00000536239 KCNJ5P48544 419 aa3.25□□□□□ -1.89
SKA3-207ENST00000536239 HTR6P50406 440 aa3.25□□□□□ -1.89
SKA3-207ENST00000536239 KRT81Q14533 505 aa3.25□□□□□ -1.89
SKA3-207ENST00000536239 MIGA2Q7L4E1 593 aa3.25□□□□□ -1.89
SKA3-207ENST00000536239 MAVSQ7Z434 540 aa3.25□□□□□ -1.89
SKA3-207ENST00000536239 STRA8Q7Z7C7 330 aa3.25□□□□□ -1.89
SKA3-207ENST00000536239 KIAA0907Q7Z7F0 614 aaPredicted RBP3.25□□□□□ -1.89
SKA3-207ENST00000536239 GALNT4Q8N4A0 578 aa3.25□□□□□ -1.89
SKA3-207ENST00000536239 ABCF1Q8NE71 845 aaKnown RBP eCLIP3.25□□□□□ -1.89
SKA3-207ENST00000536239 CTAGE1Q96RT6 745 aa3.25□□□□□ -1.89
SKA3-207ENST00000536239 FSD1LQ9BXM9 530 aa3.25□□□□□ -1.89
SKA3-207ENST00000536239 CHMP4AQ9BY43 222 aa3.25□□□□□ -1.89
SKA3-207ENST00000536239 HIPK2Q9H2X6 1198 aa3.25□□□□□ -1.89
SKA3-207ENST00000536239 FOXP1Q9H334 677 aaPredicted RBP3.25□□□□□ -1.89
SKA3-207ENST00000536239 PIF1Q9H611 641 aa3.25□□□□□ -1.89
SKA3-207ENST00000536239 MRPS18AQ9NVS2 196 aaKnown RBP3.25□□□□□ -1.89
SKA3-207ENST00000536239 BCCIPQ9P287 314 aaKnown RBP eCLIP3.25□□□□□ -1.89
SKA3-207ENST00000536239 SH2B3Q9UQQ2 575 aa3.25□□□□□ -1.89
SKA3-207ENST00000536239 H7C1Q1 480 aa3.24□□□□□ -1.89
SKA3-207ENST00000536239 GTPBP1O00178 669 aaKnown RBP3.24□□□□□ -1.89
SKA3-207ENST00000536239 SLC16A3O15427 465 aaKnown RBP3.24□□□□□ -1.89
SKA3-207ENST00000536239 SMAD6O43541 496 aaKnown RBP3.24□□□□□ -1.89
SKA3-207ENST00000536239 SGTAO43765 313 aa3.24□□□□□ -1.89
SKA3-207ENST00000536239 RRP9O43818 475 aaKnown RBP3.24□□□□□ -1.89
SKA3-207ENST00000536239 TLR5O60602 858 aa3.24□□□□□ -1.89
SKA3-207ENST00000536239 IL6RP08887 468 aaPredicted RBP3.24□□□□□ -1.89
SKA3-207ENST00000536239 CYP2A6P11509 494 aaPredicted RBP3.24□□□□□ -1.89
SKA3-207ENST00000536239 AGXTP21549 392 aa3.24□□□□□ -1.89
SKA3-207ENST00000536239 TLE1Q04724 770 aa3.24□□□□□ -1.89
SKA3-207ENST00000536239 GTF2H3Q13889 308 aa3.24□□□□□ -1.89
SKA3-207ENST00000536239 HABP2Q14520 560 aaPredicted RBP3.24□□□□□ -1.89
SKA3-207ENST00000536239 RAB39AQ14964 217 aa3.24□□□□□ -1.89
SKA3-207ENST00000536239 CERKLQ49MI3 558 aaPredicted RBP3.24□□□□□ -1.89
SKA3-207ENST00000536239 TREML2Q5T2D2 321 aa3.24□□□□□ -1.89
SKA3-207ENST00000536239 C10orf25Q5T742 122 aa3.24□□□□□ -1.89
SKA3-207ENST00000536239 FCRL6Q6DN72 434 aa3.24□□□□□ -1.89
SKA3-207ENST00000536239 KRTAP5-4Q6L8H1 288 aa3.24□□□□□ -1.89
SKA3-207ENST00000536239 PPM1NQ8N819 430 aa3.24□□□□□ -1.89
SKA3-207ENST00000536239 DAZAP1Q96EP5 407 aaKnown RBP3.24□□□□□ -1.89
SKA3-207ENST00000536239 AHCYL2Q96HN2 611 aaKnown RBP3.24□□□□□ -1.89
SKA3-207ENST00000536239 MRGPRX4Q96LA9 322 aa3.24□□□□□ -1.89
SKA3-207ENST00000536239 NAP1L5Q96NT1 182 aaPredicted RBP3.24□□□□□ -1.89
SKA3-207ENST00000536239 CNPPD1Q9BV87 410 aa3.24□□□□□ -1.89
SKA3-207ENST00000536239 TINAGL1Q9GZM7 467 aaPredicted RBP3.24□□□□□ -1.89
SKA3-207ENST00000536239 ZNF277Q9NRM2 450 aaPredicted RBP3.24□□□□□ -1.89
SKA3-207ENST00000536239 CALCOCO1Q9P1Z2 691 aa3.24□□□□□ -1.89
SKA3-207ENST00000536239 ADAMTS5Q9UNA0 930 aa3.24□□□□□ -1.89
SKA3-207ENST00000536239 RAD54BQ9Y620 910 aa3.24□□□□□ -1.89
SKA3-207ENST00000536239 ZNF785A8K8V0 405 aa3.23□□□□□ -1.89
SKA3-207ENST00000536239 ADAM10O14672 748 aa3.23□□□□□ -1.89
SKA3-207ENST00000536239 BRINP1O60477 761 aa3.23□□□□□ -1.89
SKA3-207ENST00000536239 VPS4BO75351 444 aa3.23□□□□□ -1.89
SKA3-207ENST00000536239 CHEK2O96017 543 aa3.23□□□□□ -1.89
SKA3-207ENST00000536239 CHRM5P08912 532 aaPredicted RBP3.23□□□□□ -1.89
SKA3-207ENST00000536239 NPSP0C0P6 89 aa3.23□□□□□ -1.89
SKA3-207ENST00000536239 CHRM3P20309 590 aa3.23□□□□□ -1.89
SKA3-207ENST00000536239 KRTAP5-9P26371 169 aa3.23□□□□□ -1.89
SKA3-207ENST00000536239 TOB1P50616 345 aaPredicted RBP3.23□□□□□ -1.89
SKA3-207ENST00000536239 CLCN2P51788 898 aa3.23□□□□□ -1.89
SKA3-207ENST00000536239 PSMC1P62191 440 aaKnown RBP3.23□□□□□ -1.89
SKA3-207ENST00000536239 NPY5RQ15761 445 aa3.23□□□□□ -1.89
SKA3-207ENST00000536239 CCDC93Q567U6 631 aa3.23□□□□□ -1.89
SKA3-207ENST00000536239 ZNF628Q5EBL2 1059 aa3.23□□□□□ -1.89
SKA3-207ENST00000536239 UBAP2Q5T6F2 1119 aaKnown RBP3.23□□□□□ -1.89
SKA3-207ENST00000536239 MEX3CQ5U5Q3 659 aaKnown RBP3.23□□□□□ -1.89
SKA3-207ENST00000536239 GADL1Q6ZQY3 521 aa3.23□□□□□ -1.89
SKA3-207ENST00000536239 PARS2Q7L3T8 475 aaKnown RBP3.23□□□□□ -1.89
SKA3-207ENST00000536239 TRMOQ9BU70 441 aa3.23□□□□□ -1.89
SKA3-207ENST00000536239 BRD9Q9H8M2 597 aa3.23□□□□□ -1.89
SKA3-207ENST00000536239 MDFICQ9P1T7 246 aa3.23□□□□□ -1.89
SKA3-207ENST00000536239 USP35Q9P2H5 1018 aa3.23□□□□□ -1.89
SKA3-207ENST00000536239 SAP30BPQ9UHR5 308 aaKnown RBP3.23□□□□□ -1.89
SKA3-207ENST00000536239 DSCR3O14972 297 aa3.22□□□□□ -1.89
SKA3-207ENST00000536239 USP1O94782 785 aa3.22□□□□□ -1.89
SKA3-207ENST00000536239 NCLP19338 710 aaKnown RBP3.22□□□□□ -1.89
SKA3-207ENST00000536239 CDK11BP21127 795 aaKnown RBP3.22□□□□□ -1.89
SKA3-207ENST00000536239 HOXD9P28356 352 aaPredicted RBP3.22□□□□□ -1.89
SKA3-207ENST00000536239 GCLCP48506 637 aaPredicted RBP3.22□□□□□ -1.89
SKA3-207ENST00000536239 PDE1AP54750 535 aa3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms