RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 SPDYCQ5MJ68 293 aa7.08□□□□□ -1.28
CD44-237ENST00000534082 APOA5Q6Q788 366 aa7.08□□□□□ -1.28
CD44-237ENST00000534082 SYNE3Q6ZMZ3 975 aa7.08□□□□□ -1.28
CD44-237ENST00000534082 LRRC69Q6ZNQ3 347 aa7.08□□□□□ -1.28
CD44-237ENST00000534082 GPR155Q7Z3F1 870 aa7.08□□□□□ -1.28
CD44-237ENST00000534082 RABEPKQ7Z6M1 372 aa7.08□□□□□ -1.28
CD44-237ENST00000534082 SGMS1Q86VZ5 419 aa7.08□□□□□ -1.28
CD44-237ENST00000534082 NOSTRINQ8IVI9 506 aa7.08□□□□□ -1.28
CD44-237ENST00000534082 WHAMMQ8TF30 809 aa7.08□□□□□ -1.28
CD44-237ENST00000534082 CCDC12Q8WUD4 166 aaPredicted RBP7.08□□□□□ -1.28
CD44-237ENST00000534082 CD101Q93033 1021 aa7.08□□□□□ -1.28
CD44-237ENST00000534082 TBC1D32Q96NH3 1257 aa7.08□□□□□ -1.28
CD44-237ENST00000534082 PGLYRP2Q96PD5 576 aa7.08□□□□□ -1.28
CD44-237ENST00000534082 LXNQ9BS40 222 aa7.08□□□□□ -1.28
CD44-237ENST00000534082 CRISPLD1Q9H336 500 aa7.08□□□□□ -1.28
CD44-237ENST00000534082 OSBPL3Q9H4L5 887 aa7.08□□□□□ -1.28
CD44-237ENST00000534082 PDZD7Q9H5P4 517 aa7.08□□□□□ -1.28
CD44-237ENST00000534082 TASP1Q9H6P5 420 aa7.08□□□□□ -1.28
CD44-237ENST00000534082 KIAA1522Q9P206 1035 aaPredicted RBP7.08□□□□□ -1.28
CD44-237ENST00000534082 DNMT3LQ9UJW3 386 aa7.08□□□□□ -1.28
CD44-237ENST00000534082 PCOLCE2Q9UKZ9 415 aa7.08□□□□□ -1.28
CD44-237ENST00000534082 TBX20Q9UMR3 447 aa7.08□□□□□ -1.28
CD44-237ENST00000534082 GDAQ9Y2T3 454 aa7.08□□□□□ -1.28
CD44-237ENST00000534082 MYO16Q9Y6X6 1858 aa7.08□□□□□ -1.28
CD44-237ENST00000534082 UBR5O95071 2799 aaPredicted RBP7.08□□□□□ -1.28
CD44-237ENST00000534082 SPTAN1Q13813 2472 aaKnown RBP7.07□□□□□ -1.28
CD44-237ENST00000534082 GON4LQ3T8J9 2241 aa7.07□□□□□ -1.28
CD44-237ENST00000534082 RELNP78509 3460 aa7.07□□□□□ -1.28
CD44-237ENST00000534082 FAM149AA5PLN7 773 aa7.07□□□□□ -1.28
CD44-237ENST00000534082 PODXLO00592 558 aa7.07□□□□□ -1.28
CD44-237ENST00000534082 N4BP3O15049 544 aa7.07□□□□□ -1.28
CD44-237ENST00000534082 MARCH6O60337 910 aa7.07□□□□□ -1.28
CD44-237ENST00000534082 CBFA2T3O75081 653 aa7.07□□□□□ -1.28
CD44-237ENST00000534082 VNN2O95498 520 aa7.07□□□□□ -1.28
CD44-237ENST00000534082 HNRNPLP14866 589 aaKnown RBP eCLIP7.07□□□□□ -1.28
CD44-237ENST00000534082 GLRA2P23416 452 aa7.07□□□□□ -1.28
CD44-237ENST00000534082 GNA11P29992 359 aa7.07□□□□□ -1.28
CD44-237ENST00000534082 EIF2S3P41091 472 aaKnown RBP7.07□□□□□ -1.28
CD44-237ENST00000534082 USP11P51784 963 aa7.07□□□□□ -1.28
CD44-237ENST00000534082 SEC13P55735 322 aa7.07□□□□□ -1.28
CD44-237ENST00000534082 CYP4A11Q02928 519 aa7.07□□□□□ -1.28
CD44-237ENST00000534082 SOX4Q06945 474 aaPredicted RBP7.07□□□□□ -1.28
CD44-237ENST00000534082 PDGFRLQ15198 375 aa7.07□□□□□ -1.28
CD44-237ENST00000534082 CRY1Q16526 586 aa7.07□□□□□ -1.28
CD44-237ENST00000534082 TMEM132AQ24JP5 1023 aa7.07□□□□□ -1.28
CD44-237ENST00000534082 MAP7D1Q3KQU3 841 aa7.07□□□□□ -1.28
CD44-237ENST00000534082 TAF1BQ53T94 588 aaPredicted RBP7.07□□□□□ -1.28
CD44-237ENST00000534082 C2orf27AQ580R0 203 aa7.07□□□□□ -1.28
CD44-237ENST00000534082 GALNT15Q8N3T1 639 aa7.07□□□□□ -1.28
CD44-237ENST00000534082 CPA6Q8N4T0 437 aa7.07□□□□□ -1.28
CD44-237ENST00000534082 CCDC33Q8N5R6 958 aa7.07□□□□□ -1.28
CD44-237ENST00000534082 BEST2Q8NFU1 509 aa7.07□□□□□ -1.28
CD44-237ENST00000534082 CCDC26Q8TAB7 109 aa7.07□□□□□ -1.28
CD44-237ENST00000534082 ETNPPLQ8TBG4 499 aa7.07□□□□□ -1.28
CD44-237ENST00000534082 USP33Q8TEY7 942 aa7.07□□□□□ -1.28
CD44-237ENST00000534082 FOXJ1Q92949 421 aa7.07□□□□□ -1.28
CD44-237ENST00000534082 PSMG2Q969U7 264 aa7.07□□□□□ -1.28
CD44-237ENST00000534082 PRIMPOLQ96LW4 560 aa7.07□□□□□ -1.28
CD44-237ENST00000534082 GCNAQ96QF7 691 aa7.07□□□□□ -1.28
CD44-237ENST00000534082 PRMT7Q9NVM4 692 aaPredicted RBP7.07□□□□□ -1.28
CD44-237ENST00000534082 MMP17Q9ULZ9 603 aa7.07□□□□□ -1.28
CD44-237ENST00000534082 CCL26Q9Y258 94 aa7.07□□□□□ -1.28
CD44-237ENST00000534082 NUB1Q9Y5A7 615 aa7.07□□□□□ -1.28
CD44-237ENST00000534082 PTPRDP23468 1912 aa7.06□□□□□ -1.28
CD44-237ENST00000534082 LRRIQ4A6NIV6 560 aa7.06□□□□□ -1.28
CD44-237ENST00000534082 GOLGA8AA7E2F4 631 aa7.06□□□□□ -1.28
CD44-237ENST00000534082 GOLGA8BA8MQT2 603 aa7.06□□□□□ -1.28
CD44-237ENST00000534082 B8ZZF3 427 aa7.06□□□□□ -1.28
CD44-237ENST00000534082 ERVH48-1M5A8F1 160 aa7.06□□□□□ -1.28
CD44-237ENST00000534082 RRP8O43159 456 aaKnown RBP7.06□□□□□ -1.28
CD44-237ENST00000534082 ZBTB43O43298 467 aa7.06□□□□□ -1.28
CD44-237ENST00000534082 AP5Z1O43299 807 aa7.06□□□□□ -1.28
CD44-237ENST00000534082 TLX3O43711 291 aaPredicted RBP7.06□□□□□ -1.28
CD44-237ENST00000534082 SLC28A2O43868 658 aa7.06□□□□□ -1.28
CD44-237ENST00000534082 DKK1O94907 266 aa7.06□□□□□ -1.28
CD44-237ENST00000534082 F12P00748 615 aaPredicted RBP7.06□□□□□ -1.28
CD44-237ENST00000534082 P4HBP07237 508 aaKnown RBP7.06□□□□□ -1.28
CD44-237ENST00000534082 OR4Q2P0C623 313 aa7.06□□□□□ -1.28
CD44-237ENST00000534082 ATXN1LP0C7T5 689 aaKnown RBP7.06□□□□□ -1.28
CD44-237ENST00000534082 HLA-EP13747 358 aa7.06□□□□□ -1.28
CD44-237ENST00000534082 CDC25CP30307 473 aa7.06□□□□□ -1.28
CD44-237ENST00000534082 ARL2P36404 184 aa7.06□□□□□ -1.28
CD44-237ENST00000534082 ALDH1A3P47895 512 aa7.06□□□□□ -1.28
CD44-237ENST00000534082 RPL6Q02878 288 aaKnown RBP7.06□□□□□ -1.28
CD44-237ENST00000534082 BFSP1Q12934 665 aa7.06□□□□□ -1.28
CD44-237ENST00000534082 DUSP4Q13115 394 aa7.06□□□□□ -1.28
CD44-237ENST00000534082 PPP2R5CQ13362 524 aa7.06□□□□□ -1.28
CD44-237ENST00000534082 BYSLQ13895 437 aaKnown RBP7.06□□□□□ -1.28
CD44-237ENST00000534082 PLEKHG6Q3KR16 790 aa7.06□□□□□ -1.28
CD44-237ENST00000534082 CC2D1AQ6P1N0 951 aaPredicted RBP7.06□□□□□ -1.28
CD44-237ENST00000534082 TREML4Q6UXN2 200 aa7.06□□□□□ -1.28
CD44-237ENST00000534082 OTUD6AQ7L8S5 288 aa7.06□□□□□ -1.28
CD44-237ENST00000534082 DNAJB7Q7Z6W7 309 aaPredicted RBP7.06□□□□□ -1.28
CD44-237ENST00000534082 C4orf19Q8IY42 314 aa7.06□□□□□ -1.28
CD44-237ENST00000534082 DEFB119Q8N690 84 aa7.06□□□□□ -1.28
CD44-237ENST00000534082 RIN3Q8TB24 985 aa7.06□□□□□ -1.28
CD44-237ENST00000534082 FAM174AQ8TBP5 190 aa7.06□□□□□ -1.28
CD44-237ENST00000534082 BICD2Q8TD16 824 aa7.06□□□□□ -1.28
CD44-237ENST00000534082 TBCKQ8TEA7 893 aa7.06□□□□□ -1.28
CD44-237ENST00000534082 SETD7Q8WTS6 366 aaKnown RBP7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms