RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 NPAS3Q8IXF0 933 aa13.88□□□□□ -0.19
VPS28-216ENST00000533806 HS6ST3Q8IZP7 471 aa13.88□□□□□ -0.19
VPS28-216ENST00000533806 MLKLQ8NB16 471 aa13.88□□□□□ -0.19
VPS28-216ENST00000533806 SEMA4DQ92854 862 aa13.88□□□□□ -0.19
VPS28-216ENST00000533806 PSMG2Q969U7 264 aa13.88□□□□□ -0.19
VPS28-216ENST00000533806 TCEAL4Q96EI5 215 aa13.88□□□□□ -0.19
VPS28-216ENST00000533806 ZNF512Q96ME7 567 aaPredicted RBP13.88□□□□□ -0.19
VPS28-216ENST00000533806 CORO1BQ9BR76 489 aa13.88□□□□□ -0.19
VPS28-216ENST00000533806 BCO2Q9BYV7 579 aa13.88□□□□□ -0.19
VPS28-216ENST00000533806 NUP62CLQ9H1M0 184 aa13.88□□□□□ -0.19
VPS28-216ENST00000533806 SMYD3Q9H7B4 428 aa13.88□□□□□ -0.19
VPS28-216ENST00000533806 ARMCX3Q9UH62 379 aaPredicted RBP13.88□□□□□ -0.19
VPS28-216ENST00000533806 RWDD2AQ9UIY3 292 aa13.88□□□□□ -0.19
VPS28-216ENST00000533806 CTNND2Q9UQB3 1225 aa13.88□□□□□ -0.19
VPS28-216ENST00000533806 ASB3Q9Y575 518 aa13.88□□□□□ -0.19
VPS28-216ENST00000533806 STX10O60499 249 aa13.87□□□□□ -0.19
VPS28-216ENST00000533806 PDGFRBP09619 1106 aa13.87□□□□□ -0.19
VPS28-216ENST00000533806 ALDH1A3P47895 512 aa13.87□□□□□ -0.19
VPS28-216ENST00000533806 EPHB3P54753 998 aa13.87□□□□□ -0.19
VPS28-216ENST00000533806 STX17P56962 302 aa13.87□□□□□ -0.19
VPS28-216ENST00000533806 PLD1Q13393 1074 aa13.87□□□□□ -0.19
VPS28-216ENST00000533806 SPOPLQ6IQ16 392 aa13.87□□□□□ -0.19
VPS28-216ENST00000533806 DNAJB7Q7Z6W7 309 aaPredicted RBP13.87□□□□□ -0.19
VPS28-216ENST00000533806 LEMD2Q8NC56 503 aa13.87□□□□□ -0.19
VPS28-216ENST00000533806 MYCBPAPQ8TBZ2 947 aa13.87□□□□□ -0.19
VPS28-216ENST00000533806 EDAQ92838 391 aa13.87□□□□□ -0.19
VPS28-216ENST00000533806 FUBP3Q96I24 572 aaKnown RBP eCLIP13.87□□□□□ -0.19
VPS28-216ENST00000533806 FAXDC2Q96IV6 333 aa13.87□□□□□ -0.19
VPS28-216ENST00000533806 LPIN3Q9BQK8 851 aa13.87□□□□□ -0.19
VPS28-216ENST00000533806 SYT15Q9BQS2 421 aa13.87□□□□□ -0.19
VPS28-216ENST00000533806 PI4K2AQ9BTU6 479 aa13.87□□□□□ -0.19
VPS28-216ENST00000533806 SNX25Q9H3E2 840 aa13.87□□□□□ -0.19
VPS28-216ENST00000533806 DPEP3Q9H4B8 488 aa13.87□□□□□ -0.19
VPS28-216ENST00000533806 KCNK12Q9HB15 430 aa13.87□□□□□ -0.19
VPS28-216ENST00000533806 METTL14Q9HCE5 456 aaKnown RBP13.87□□□□□ -0.19
VPS28-216ENST00000533806 ABI2Q9NYB9 513 aaPredicted RBP13.87□□□□□ -0.19
VPS28-216ENST00000533806 ASGR2P07307 311 aa13.86□□□□□ -0.19
VPS28-216ENST00000533806 HMGA1P17096 107 aaKnown RBP13.86□□□□□ -0.19
VPS28-216ENST00000533806 PTPN1P18031 435 aaKnown RBP13.86□□□□□ -0.19
VPS28-216ENST00000533806 CYP2F1P24903 491 aa13.86□□□□□ -0.19
VPS28-216ENST00000533806 GBP2P32456 591 aaPredicted RBP13.86□□□□□ -0.19
VPS28-216ENST00000533806 PIK3CAP42336 1068 aa13.86□□□□□ -0.19
VPS28-216ENST00000533806 MAGEA11P43364 429 aa13.86□□□□□ -0.19
VPS28-216ENST00000533806 RAP1GAPP47736 663 aa13.86□□□□□ -0.19
VPS28-216ENST00000533806 MXI1P50539 228 aa13.86□□□□□ -0.19
VPS28-216ENST00000533806 PSMC1P62191 440 aaKnown RBP13.86□□□□□ -0.19
VPS28-216ENST00000533806 ZXDAP98168 799 aa13.86□□□□□ -0.19
VPS28-216ENST00000533806 HTR4Q13639 388 aa13.86□□□□□ -0.19
VPS28-216ENST00000533806 MGAT5BQ3V5L5 792 aa13.86□□□□□ -0.19
VPS28-216ENST00000533806 IQCEQ6IPM2 695 aa13.86□□□□□ -0.19
VPS28-216ENST00000533806 GAREM2Q75VX8 874 aa13.86□□□□□ -0.19
VPS28-216ENST00000533806 GET4Q7L5D6 327 aaPredicted RBP13.86□□□□□ -0.19
VPS28-216ENST00000533806 IRF2BP1Q8IU81 584 aa13.86□□□□□ -0.19
VPS28-216ENST00000533806 TRIM59Q8IWR1 403 aa13.86□□□□□ -0.19
VPS28-216ENST00000533806 CRYBG2Q8N1P7 616 aa13.86□□□□□ -0.19
VPS28-216ENST00000533806 FBXL13Q8NEE6 735 aa13.86□□□□□ -0.19
VPS28-216ENST00000533806 OR6B3Q8NGW1 331 aa13.86□□□□□ -0.19
VPS28-216ENST00000533806 NXPE3Q969Y0 559 aa13.86□□□□□ -0.19
VPS28-216ENST00000533806 PCED1BQ96HM7 432 aa13.86□□□□□ -0.19
VPS28-216ENST00000533806 SEPT5Q99719 369 aaPredicted RBP13.86□□□□□ -0.19
VPS28-216ENST00000533806 IL21Q9HBE4 155 aa13.86□□□□□ -0.19
VPS28-216ENST00000533806 ZNF334Q9HCZ1 680 aaPredicted RBP13.86□□□□□ -0.19
VPS28-216ENST00000533806 RAB20Q9NX57 234 aa13.86□□□□□ -0.19
VPS28-216ENST00000533806 GDE1Q9NZC3 331 aa13.86□□□□□ -0.19
VPS28-216ENST00000533806 IGSF9Q9P2J2 1179 aa13.86□□□□□ -0.19
VPS28-216ENST00000533806 SORCS3Q9UPU3 1222 aa13.86□□□□□ -0.19
VPS28-216ENST00000533806 MRPS23Q9Y3D9 190 aaKnown RBP13.86□□□□□ -0.19
VPS28-216ENST00000533806 DOCK6Q96HP0 2047 aa13.86□□□□□ -0.19
VPS28-216ENST00000533806 A8MXQ7 604 aa13.85□□□□□ -0.19
VPS28-216ENST00000533806 ZNF197O14709 1029 aa13.85□□□□□ -0.19
VPS28-216ENST00000533806 GPR37L1O60883 481 aa13.85□□□□□ -0.19
VPS28-216ENST00000533806 P4HA1P13674 534 aa13.85□□□□□ -0.19
VPS28-216ENST00000533806 CEBPBP17676 345 aa13.85□□□□□ -0.19
VPS28-216ENST00000533806 GPR15P49685 360 aa13.85□□□□□ -0.19
VPS28-216ENST00000533806 NOP14P78316 857 aaKnown RBP13.85□□□□□ -0.19
VPS28-216ENST00000533806 INCA1Q0VD86 236 aa13.85□□□□□ -0.19
VPS28-216ENST00000533806 MAPRE1Q15691 268 aaKnown RBP13.85□□□□□ -0.19
VPS28-216ENST00000533806 DPCR1Q3MIW9 517 aa13.85□□□□□ -0.19
VPS28-216ENST00000533806 CYP4A22Q5TCH4 519 aa13.85□□□□□ -0.19
VPS28-216ENST00000533806 PARM1Q6UWI2 310 aa13.85□□□□□ -0.19
VPS28-216ENST00000533806 VSTM1Q6UX27 236 aa13.85□□□□□ -0.19
VPS28-216ENST00000533806 PDZD4Q76G19 769 aaPredicted RBP13.85□□□□□ -0.19
VPS28-216ENST00000533806 TMEM150AQ86TG1 271 aa13.85□□□□□ -0.19
VPS28-216ENST00000533806 UNC93AQ86WB7 457 aa13.85□□□□□ -0.19
VPS28-216ENST00000533806 ELMOD1Q8N336 334 aa13.85□□□□□ -0.19
VPS28-216ENST00000533806 SLC44A3Q8N4M1 653 aa13.85□□□□□ -0.19
VPS28-216ENST00000533806 SHKBP1Q8TBC3 707 aa13.85□□□□□ -0.19
VPS28-216ENST00000533806 RSAD2Q8WXG1 361 aa13.85□□□□□ -0.19
VPS28-216ENST00000533806 MYLPFQ96A32 169 aa13.85□□□□□ -0.19
VPS28-216ENST00000533806 SRRTQ9BXP5 876 aaKnown RBP13.85□□□□□ -0.19
VPS28-216ENST00000533806 NIF3L1Q9GZT8 377 aa13.85□□□□□ -0.19
VPS28-216ENST00000533806 MMRN2Q9H8L6 949 aa13.85□□□□□ -0.19
VPS28-216ENST00000533806 CYP3A43Q9HB55 503 aa13.85□□□□□ -0.19
VPS28-216ENST00000533806 ASAH2Q9NR71 780 aa13.85□□□□□ -0.19
VPS28-216ENST00000533806 TMEM30AQ9NV96 361 aa13.85□□□□□ -0.19
VPS28-216ENST00000533806 DOCK8Q8NF50 2099 aa13.84□□□□□ -0.19
VPS28-216ENST00000533806 GOLGA6L22H0YM25 854 aa13.84□□□□□ -0.19
VPS28-216ENST00000533806 GNA14O95837 355 aa13.84□□□□□ -0.19
VPS28-216ENST00000533806 ERCC5P28715 1186 aaPredicted RBP13.84□□□□□ -0.19
VPS28-216ENST00000533806 FMO5P49326 533 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms