RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 PTPRZ1P23471 2315 aaPredicted RBP16.58■□□□□ 0.24
CPSF1-211ENST00000533492 PTPRJQ12913 1337 aa16.57■□□□□ 0.24
CPSF1-211ENST00000533492 CHADO15335 359 aa16.57■□□□□ 0.24
CPSF1-211ENST00000533492 SP9P0CG40 484 aa16.57■□□□□ 0.24
CPSF1-211ENST00000533492 CSH1P0DML2 217 aa16.57■□□□□ 0.24
CPSF1-211ENST00000533492 CSH2P0DML3 217 aa16.57■□□□□ 0.24
CPSF1-211ENST00000533492 RPL10AP62906 217 aaKnown RBP16.57■□□□□ 0.24
CPSF1-211ENST00000533492 KRT85P78386 507 aa16.57■□□□□ 0.24
CPSF1-211ENST00000533492 CYP4F8P98187 520 aa16.57■□□□□ 0.24
CPSF1-211ENST00000533492 KNOP1Q1ED39 458 aaKnown RBP16.57■□□□□ 0.24
CPSF1-211ENST00000533492 SOWAHAQ2M3V2 549 aa16.57■□□□□ 0.24
CPSF1-211ENST00000533492 TRAPPC11Q7Z392 1133 aa16.57■□□□□ 0.24
CPSF1-211ENST00000533492 GRAMD1CQ8IYS0 662 aa16.57■□□□□ 0.24
CPSF1-211ENST00000533492 LEO1Q8WVC0 666 aaPredicted RBP16.57■□□□□ 0.24
CPSF1-211ENST00000533492 FAM3CQ92520 227 aa16.57■□□□□ 0.24
CPSF1-211ENST00000533492 CCDC127Q96BQ5 260 aa16.57■□□□□ 0.24
CPSF1-211ENST00000533492 SPATA32Q96LK8 384 aa16.57■□□□□ 0.24
CPSF1-211ENST00000533492 SEMA4AQ9H3S1 761 aa16.57■□□□□ 0.24
CPSF1-211ENST00000533492 ZMYM5Q9UJ78 669 aa16.57■□□□□ 0.24
CPSF1-211ENST00000533492 MAGED2Q9UNF1 606 aaPredicted RBP16.57■□□□□ 0.24
CPSF1-211ENST00000533492 PIAS3Q9Y6X2 628 aa16.57■□□□□ 0.24
CPSF1-211ENST00000533492 COL4A3Q01955 1670 aa16.56■□□□□ 0.24
CPSF1-211ENST00000533492 EXOC3O60645 756 aa16.56■□□□□ 0.24
CPSF1-211ENST00000533492 CMA1P23946 247 aa16.56■□□□□ 0.24
CPSF1-211ENST00000533492 CYP2F1P24903 491 aa16.56■□□□□ 0.24
CPSF1-211ENST00000533492 CYP24A1Q07973 514 aa16.56■□□□□ 0.24
CPSF1-211ENST00000533492 PSMD6Q15008 389 aa16.56■□□□□ 0.24
CPSF1-211ENST00000533492 BMT2Q1RMZ1 405 aa16.56■□□□□ 0.24
CPSF1-211ENST00000533492 OSTM1Q86WC4 334 aa16.56■□□□□ 0.24
CPSF1-211ENST00000533492 SPATA2LQ8IUW3 424 aaPredicted RBP16.56■□□□□ 0.24
CPSF1-211ENST00000533492 GOLGA5Q8TBA6 731 aa16.56■□□□□ 0.24
CPSF1-211ENST00000533492 CLDN23Q96B33 292 aa16.56■□□□□ 0.24
CPSF1-211ENST00000533492 RSPRY1Q96DX4 576 aa16.56■□□□□ 0.24
CPSF1-211ENST00000533492 PAGE5Q96GU1 130 aa16.56■□□□□ 0.24
CPSF1-211ENST00000533492 MMS19Q96T76 1030 aa16.56■□□□□ 0.24
CPSF1-211ENST00000533492 MKNK1Q9BUB5 465 aa16.56■□□□□ 0.24
CPSF1-211ENST00000533492 IL21Q9HBE4 155 aa16.56■□□□□ 0.24
CPSF1-211ENST00000533492 ABCB6Q9NP58 842 aa16.56■□□□□ 0.24
CPSF1-211ENST00000533492 EXOC1Q9NV70 894 aa16.56■□□□□ 0.24
CPSF1-211ENST00000533492 OBP2AQ9NY56 170 aa16.56■□□□□ 0.24
CPSF1-211ENST00000533492 USP25Q9UHP3 1055 aa16.56■□□□□ 0.24
CPSF1-211ENST00000533492 R4GN57 208 aa16.56■□□□□ 0.24
CPSF1-211ENST00000533492 F5P12259 2224 aa16.55■□□□□ 0.24
CPSF1-211ENST00000533492 USP34Q70CQ2 3546 aa16.55■□□□□ 0.24
CPSF1-211ENST00000533492 NCANO14594 1321 aa16.55■□□□□ 0.24
CPSF1-211ENST00000533492 A0A1B0GVL5 298 aa16.55■□□□□ 0.24
CPSF1-211ENST00000533492 GABRDO14764 452 aa16.55■□□□□ 0.24
CPSF1-211ENST00000533492 PFKFB1P16118 471 aa16.55■□□□□ 0.24
CPSF1-211ENST00000533492 RPS9P46781 194 aaKnown RBP16.55■□□□□ 0.24
CPSF1-211ENST00000533492 GPR15P49685 360 aa16.55■□□□□ 0.24
CPSF1-211ENST00000533492 KPNA1P52294 538 aaPredicted RBP16.55■□□□□ 0.24
CPSF1-211ENST00000533492 FCHO2Q0JRZ9 810 aa16.55■□□□□ 0.24
CPSF1-211ENST00000533492 PSMD2Q13200 908 aa16.55■□□□□ 0.24
CPSF1-211ENST00000533492 TRPC3Q13507 836 aa16.55■□□□□ 0.24
CPSF1-211ENST00000533492 DDR2Q16832 855 aa16.55■□□□□ 0.24
CPSF1-211ENST00000533492 ARHGAP29Q52LW3 1261 aa16.55■□□□□ 0.24
CPSF1-211ENST00000533492 SDHAF4Q5VUM1 108 aa16.55■□□□□ 0.24
CPSF1-211ENST00000533492 C4orf50Q6ZRC1 276 aa16.55■□□□□ 0.24
CPSF1-211ENST00000533492 MRPS31Q92665 395 aaKnown RBP16.55■□□□□ 0.24
CPSF1-211ENST00000533492 CGRRF1Q99675 332 aa16.55■□□□□ 0.24
CPSF1-211ENST00000533492 SLC46A2Q9BY10 475 aa16.55■□□□□ 0.24
CPSF1-211ENST00000533492 THG1LQ9NWX6 298 aaKnown RBP16.55■□□□□ 0.24
CPSF1-211ENST00000533492 UXTQ9UBK9 157 aaPredicted RBP16.55■□□□□ 0.24
CPSF1-211ENST00000533492 FBXO4Q9UKT5 387 aa16.55■□□□□ 0.24
CPSF1-211ENST00000533492 CDH9Q9ULB4 789 aa16.55■□□□□ 0.24
CPSF1-211ENST00000533492 ATP6V1DQ9Y5K8 247 aa16.55■□□□□ 0.24
CPSF1-211ENST00000533492 RIF1Q5UIP0 2472 aaKnown RBP16.55■□□□□ 0.24
CPSF1-211ENST00000533492 MYBPHLA2RUH7 354 aa16.54■□□□□ 0.24
CPSF1-211ENST00000533492 HCRTO43612 131 aa16.54■□□□□ 0.24
CPSF1-211ENST00000533492 ACTN4O43707 911 aaKnown RBP16.54■□□□□ 0.24
CPSF1-211ENST00000533492 PHACTR2O75167 634 aa16.54■□□□□ 0.24
CPSF1-211ENST00000533492 CST3P01034 146 aaPredicted RBP16.54■□□□□ 0.24
CPSF1-211ENST00000533492 LMNAP02545 664 aaKnown RBP16.54■□□□□ 0.24
CPSF1-211ENST00000533492 F11P03951 625 aa16.54■□□□□ 0.24
CPSF1-211ENST00000533492 PDGFRBP09619 1106 aa16.54■□□□□ 0.24
CPSF1-211ENST00000533492 HMGA1P17096 107 aaKnown RBP16.54■□□□□ 0.24
CPSF1-211ENST00000533492 CCNE1P24864 410 aa16.54■□□□□ 0.24
CPSF1-211ENST00000533492 DDX6P26196 483 aaKnown RBP eCLIP16.54■□□□□ 0.24
CPSF1-211ENST00000533492 WEE1P30291 646 aa16.54■□□□□ 0.24
CPSF1-211ENST00000533492 AVPR1AP37288 418 aa16.54■□□□□ 0.24
CPSF1-211ENST00000533492 MLLT6P55198 1093 aaPredicted RBP16.54■□□□□ 0.24
CPSF1-211ENST00000533492 NLRP12P59046 1061 aa16.54■□□□□ 0.24
CPSF1-211ENST00000533492 CSTF1Q05048 431 aaKnown RBP16.54■□□□□ 0.24
CPSF1-211ENST00000533492 C1orf228Q6PIY5 440 aa16.54■□□□□ 0.24
CPSF1-211ENST00000533492 SCN4BQ8IWT1 228 aa16.54■□□□□ 0.24
CPSF1-211ENST00000533492 C12orf56Q8IXR9 622 aa16.54■□□□□ 0.24
CPSF1-211ENST00000533492 ADSSL1Q8N142 457 aa16.54■□□□□ 0.24
CPSF1-211ENST00000533492 CELF5Q8N6W0 485 aaKnown RBP16.54■□□□□ 0.24
CPSF1-211ENST00000533492 MAB21L3Q8N8X9 362 aa16.54■□□□□ 0.24
CPSF1-211ENST00000533492 BPIFB1Q8TDL5 484 aa16.54■□□□□ 0.24
CPSF1-211ENST00000533492 MSANTD3Q96H12 275 aa16.54■□□□□ 0.24
CPSF1-211ENST00000533492 FUBP3Q96I24 572 aaKnown RBP eCLIP16.54■□□□□ 0.24
CPSF1-211ENST00000533492 SYT15Q9BQS2 421 aa16.54■□□□□ 0.24
CPSF1-211ENST00000533492 C8orf33Q9H7E9 229 aaPredicted RBP16.54■□□□□ 0.24
CPSF1-211ENST00000533492 LMAN1LQ9HAT1 526 aa16.54■□□□□ 0.24
CPSF1-211ENST00000533492 MAGEC2Q9UBF1 373 aaPredicted RBP16.54■□□□□ 0.24
CPSF1-211ENST00000533492 TICRRQ7Z2Z1 1910 aa16.54■□□□□ 0.24
CPSF1-211ENST00000533492 SHISA7A6NL88 538 aa16.53■□□□□ 0.24
CPSF1-211ENST00000533492 SLC38A8A6NNN8 435 aa16.53■□□□□ 0.24
CPSF1-211ENST00000533492 ARNTLO00327 626 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms