RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 IMPG2Q9BZV3 1241 aa3.53□□□□□ -1.84
CD44-234ENST00000531873 EPC1Q9H2F5 836 aa3.53□□□□□ -1.84
CD44-234ENST00000531873 C12orf65Q9H3J6 166 aaKnown RBP3.53□□□□□ -1.84
CD44-234ENST00000531873 HEYLQ9NQ87 328 aaPredicted RBP3.53□□□□□ -1.84
CD44-234ENST00000531873 NOL12Q9UGY1 213 aaKnown RBP eCLIP3.53□□□□□ -1.84
CD44-234ENST00000531873 CAPN11Q9UMQ6 739 aa3.53□□□□□ -1.84
CD44-234ENST00000531873 LRRFIP2Q9Y608 721 aaKnown RBP3.53□□□□□ -1.84
CD44-234ENST00000531873 LOC102723971A0A1B0GUV8 181 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 A0A1B0GVC2 190 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 DRGXA6NNA5 263 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 PRR5-ARHGAP8B1AHC4 643 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 EYA2O00167 538 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 RAB27BO00194 218 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 PIP5K1BO14986 540 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 CCP110O43303 1012 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 ASNA1O43681 348 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 INSRRP14616 1297 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 GCSHP23434 173 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 MST1P26927 711 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 CPT1AP50416 773 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 CHN2P52757 468 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 PNLIPRP1P54315 467 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 GRM1Q13255 1194 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 SIM2Q14190 667 aaPredicted RBP3.52□□□□□ -1.85
CD44-234ENST00000531873 PUM1Q14671 1186 aaKnown RBP eCLIP3.52□□□□□ -1.85
CD44-234ENST00000531873 PLA1AQ53H76 456 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 TMTC4Q5T4D3 741 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 RAP1GAP2Q684P5 730 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 PLAG1Q6DJT9 500 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 SULT6B1Q6IMI4 303 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 DRICH1Q6PGQ1 229 aaPredicted RBP3.52□□□□□ -1.85
CD44-234ENST00000531873 BORAQ6PGQ7 559 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 CLEC4GQ6UXB4 293 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 RFX8Q6ZV50 586 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 KCTD20Q7Z5Y7 419 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 FAM83AQ86UY5 434 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 ZNF280BQ86YH2 543 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 ANKRD18AQ8IVF6 992 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 ELOA2Q8IYF1 753 aaPredicted RBP3.52□□□□□ -1.85
CD44-234ENST00000531873 FAM9AQ8IZU1 332 aaPredicted RBP3.52□□□□□ -1.85
CD44-234ENST00000531873 CFAP52Q8N1V2 620 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 CLASRPQ8N2M8 674 aaKnown RBP3.52□□□□□ -1.85
CD44-234ENST00000531873 GALNT15Q8N3T1 639 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 SDR16C5Q8N3Y7 309 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 AOPEPQ8N6M6 819 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 TEX19Q8NA77 164 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 OR1N1Q8NGS0 311 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 ZFP28Q8NHY6 868 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 NUP133Q8WUM0 1156 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 IPCEF1Q8WWN9 437 aaPredicted RBP3.52□□□□□ -1.85
CD44-234ENST00000531873 LTV1Q96GA3 475 aaPredicted RBP3.52□□□□□ -1.85
CD44-234ENST00000531873 TMEM176AQ96HP8 235 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 LRIG1Q96JA1 1093 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 SLC46A1Q96NT5 459 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 LRRC37BQ96QE4 947 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 LMF1Q96S06 567 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 PPP1R9BQ96SB3 815 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 EIF2AK1Q9BQI3 630 aaKnown RBP3.52□□□□□ -1.85
CD44-234ENST00000531873 CPPED1Q9BRF8 314 aaPredicted RBP3.52□□□□□ -1.85
CD44-234ENST00000531873 CNPPD1Q9BV87 410 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 KATNAL1Q9BW62 490 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 TTYH3Q9C0H2 523 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 DDX24Q9GZR7 859 aaKnown RBP eCLIP3.52□□□□□ -1.85
CD44-234ENST00000531873 SIK2Q9H0K1 926 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 DHX36Q9H2U1 1008 aaKnown RBP3.52□□□□□ -1.85
CD44-234ENST00000531873 NELFAQ9H3P2 528 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 SEC61A2Q9H9S3 476 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 XPNPEP3Q9NQH7 507 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 USP40Q9NVE5 1235 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 PDP2Q9P2J9 529 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 DNMT3BQ9UBC3 853 aaKnown RBP3.52□□□□□ -1.85
CD44-234ENST00000531873 DKK4Q9UBT3 224 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 SRP68Q9UHB9 627 aaKnown RBP3.52□□□□□ -1.85
CD44-234ENST00000531873 HDAC9Q9UKV0 1011 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 CNOT11Q9UKZ1 510 aaKnown RBP3.52□□□□□ -1.85
CD44-234ENST00000531873 CDYLQ9Y232 598 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 ATP11BQ9Y2G3 1177 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 ZBTB32Q9Y2Y4 487 aaPredicted RBP3.52□□□□□ -1.85
CD44-234ENST00000531873 SH3BP1Q9Y3L3 701 aa3.52□□□□□ -1.85
CD44-234ENST00000531873 FER1L4A9Z1Z3 1794 aa3.51□□□□□ -1.85
CD44-234ENST00000531873 MYO1CO00159 1063 aa3.51□□□□□ -1.85
CD44-234ENST00000531873 EIF3FO00303 357 aaPredicted RBP3.51□□□□□ -1.85
CD44-234ENST00000531873 PCDH17O14917 1159 aa3.51□□□□□ -1.85
CD44-234ENST00000531873 RRP9O43818 475 aaKnown RBP3.51□□□□□ -1.85
CD44-234ENST00000531873 VPS4BO75351 444 aa3.51□□□□□ -1.85
CD44-234ENST00000531873 PECAM1P16284 738 aaPredicted RBP3.51□□□□□ -1.85
CD44-234ENST00000531873 GNAT2P19087 354 aa3.51□□□□□ -1.85
CD44-234ENST00000531873 CHRM3P20309 590 aa3.51□□□□□ -1.85
CD44-234ENST00000531873 ZNF134P52741 427 aa3.51□□□□□ -1.85
CD44-234ENST00000531873 EPHB4P54760 987 aa3.51□□□□□ -1.85
CD44-234ENST00000531873 ARL4CP56559 192 aa3.51□□□□□ -1.85
CD44-234ENST00000531873 MXRA7P84157 204 aa3.51□□□□□ -1.85
CD44-234ENST00000531873 FSTL1Q12841 308 aa3.51□□□□□ -1.85
CD44-234ENST00000531873 ARHGEF7Q14155 803 aa3.51□□□□□ -1.85
CD44-234ENST00000531873 SLC29A2Q14542 456 aa3.51□□□□□ -1.85
CD44-234ENST00000531873 KCNAB1Q14722 419 aa3.51□□□□□ -1.85
CD44-234ENST00000531873 GRM7Q14831 915 aa3.51□□□□□ -1.85
CD44-234ENST00000531873 JAKMIP3Q5VZ66 844 aa3.51□□□□□ -1.85
CD44-234ENST00000531873 ARL6IP4Q66PJ3 421 aaKnown RBP3.51□□□□□ -1.85
CD44-234ENST00000531873 MFSD5Q6N075 450 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms