RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 NKX2-4Q9H2Z4 354 aa22.5■■□□□ 1.19
VPS28-212ENST00000530836 AVENQ9NQS1 362 aaPredicted RBP22.5■■□□□ 1.19
VPS28-212ENST00000530836 CDC23Q9UJX2 597 aa22.5■■□□□ 1.19
VPS28-212ENST00000530836 SAR1BQ9Y6B6 198 aa22.5■■□□□ 1.19
VPS28-212ENST00000530836 PTPRSQ13332 1948 aa22.5■■□□□ 1.19
VPS28-212ENST00000530836 HUS1O60921 280 aa22.49■■□□□ 1.19
VPS28-212ENST00000530836 BRD2P25440 801 aaKnown RBP22.49■■□□□ 1.19
VPS28-212ENST00000530836 SCNN1GP51170 649 aa22.49■■□□□ 1.19
VPS28-212ENST00000530836 C1QBPQ07021 282 aaKnown RBP22.49■■□□□ 1.19
VPS28-212ENST00000530836 LIN9Q5TKA1 542 aa22.49■■□□□ 1.19
VPS28-212ENST00000530836 NAA35Q5VZE5 725 aa22.49■■□□□ 1.19
VPS28-212ENST00000530836 DNAAF5Q86Y56 855 aa22.49■■□□□ 1.19
VPS28-212ENST00000530836 ZNF653Q96CK0 615 aa22.49■■□□□ 1.19
VPS28-212ENST00000530836 LRCH3Q96II8 777 aa22.49■■□□□ 1.19
VPS28-212ENST00000530836 ELOVL4Q9GZR5 314 aa22.49■■□□□ 1.19
VPS28-212ENST00000530836 GRID2IPA4D2P6 1211 aa22.49■■□□□ 1.19
VPS28-212ENST00000530836 CALCAP01258 141 aa22.49■■□□□ 1.19
VPS28-212ENST00000530836 CNGA2Q16280 664 aa22.49■■□□□ 1.19
VPS28-212ENST00000530836 SOWAHAQ2M3V2 549 aa22.49■■□□□ 1.19
VPS28-212ENST00000530836 PAN2Q504Q3 1202 aaKnown RBP22.49■■□□□ 1.19
VPS28-212ENST00000530836 SGO2Q562F6 1265 aa22.49■■□□□ 1.19
VPS28-212ENST00000530836 FIBCD1Q8N539 461 aa22.49■■□□□ 1.19
VPS28-212ENST00000530836 HEXIM2Q96MH2 286 aaKnown RBP22.49■■□□□ 1.19
VPS28-212ENST00000530836 SLC28A3Q9HAS3 691 aa22.49■■□□□ 1.19
VPS28-212ENST00000530836 GOLGA2P5Q9HBQ8 144 aa22.49■■□□□ 1.19
VPS28-212ENST00000530836 CTTNBP2NLQ9P2B4 639 aa22.49■■□□□ 1.19
VPS28-212ENST00000530836 KANSL3Q9P2N6 904 aa22.49■■□□□ 1.19
VPS28-212ENST00000530836 LINC01553A4QN01 128 aa22.48■■□□□ 1.19
VPS28-212ENST00000530836 ARHGEF15O94989 841 aa22.48■■□□□ 1.19
VPS28-212ENST00000530836 SLU7O95391 586 aaKnown RBP22.48■■□□□ 1.19
VPS28-212ENST00000530836 ATP1A1P05023 1023 aaKnown RBP22.48■■□□□ 1.19
VPS28-212ENST00000530836 AMPD2Q01433 879 aa22.48■■□□□ 1.19
VPS28-212ENST00000530836 NOMO2Q5JPE7 1267 aa22.48■■□□□ 1.19
VPS28-212ENST00000530836 MON1BQ7L1V2 547 aa22.48■■□□□ 1.19
VPS28-212ENST00000530836 SLFN11Q7Z7L1 901 aa22.48■■□□□ 1.19
VPS28-212ENST00000530836 LRRC57Q8N9N7 239 aa22.48■■□□□ 1.19
VPS28-212ENST00000530836 CPA5Q8WXQ8 436 aa22.48■■□□□ 1.19
VPS28-212ENST00000530836 TFAP2BQ92481 460 aa22.48■■□□□ 1.19
VPS28-212ENST00000530836 ARHGEF26Q96DR7 871 aa22.48■■□□□ 1.19
VPS28-212ENST00000530836 MIOSQ9NXC5 875 aa22.48■■□□□ 1.19
VPS28-212ENST00000530836 SCN1AP35498 2009 aa22.47■■□□□ 1.19
VPS28-212ENST00000530836 PODXLO00592 558 aa22.47■■□□□ 1.19
VPS28-212ENST00000530836 ENC1O14682 589 aa22.47■■□□□ 1.19
VPS28-212ENST00000530836 SPTLC1O15269 473 aa22.47■■□□□ 1.19
VPS28-212ENST00000530836 CALB1P05937 261 aa22.47■■□□□ 1.19
VPS28-212ENST00000530836 TCP1P17987 556 aaKnown RBP22.47■■□□□ 1.19
VPS28-212ENST00000530836 AFF1P51825 1210 aaKnown RBP22.47■■□□□ 1.19
VPS28-212ENST00000530836 TAP1Q03518 808 aa22.47■■□□□ 1.19
VPS28-212ENST00000530836 TUSC3Q13454 348 aa22.47■■□□□ 1.19
VPS28-212ENST00000530836 WHAMMP3Q1A5X7 153 aa22.47■■□□□ 1.19
VPS28-212ENST00000530836 MSANTD4Q8NCY6 345 aa22.47■■□□□ 1.19
VPS28-212ENST00000530836 URGCPQ8TCY9 931 aa22.47■■□□□ 1.19
VPS28-212ENST00000530836 TWNKQ96RR1 684 aa22.47■■□□□ 1.19
VPS28-212ENST00000530836 SNX25Q9H3E2 840 aa22.47■■□□□ 1.19
VPS28-212ENST00000530836 ADAM22Q9P0K1 906 aa22.47■■□□□ 1.19
VPS28-212ENST00000530836 CNOT8Q9UFF9 292 aaKnown RBP22.47■■□□□ 1.19
VPS28-212ENST00000530836 CHD9Q3L8U1 2897 aa22.46■■□□□ 1.19
VPS28-212ENST00000530836 MMP8P22894 467 aa22.46■■□□□ 1.19
VPS28-212ENST00000530836 MEI1Q5TIA1 1274 aa22.46■■□□□ 1.19
VPS28-212ENST00000530836 PPP2R2DQ66LE6 453 aa22.46■■□□□ 1.19
VPS28-212ENST00000530836 C11orf63Q6NUN7 778 aa22.46■■□□□ 1.19
VPS28-212ENST00000530836 GPR153Q6NV75 609 aa22.46■■□□□ 1.19
VPS28-212ENST00000530836 DAAM2Q86T65 1068 aa22.46■■□□□ 1.19
VPS28-212ENST00000530836 PASD1Q8IV76 773 aa22.46■■□□□ 1.19
VPS28-212ENST00000530836 TMEM86AQ8N2M4 240 aa22.46■■□□□ 1.19
VPS28-212ENST00000530836 OR6B3Q8NGW1 331 aa22.46■■□□□ 1.19
VPS28-212ENST00000530836 ZSWIM1Q9BR11 485 aa22.46■■□□□ 1.19
VPS28-212ENST00000530836 MRPL45Q9BRJ2 306 aaKnown RBP22.46■■□□□ 1.19
VPS28-212ENST00000530836 MRPL9Q9BYD2 267 aaKnown RBP22.46■■□□□ 1.19
VPS28-212ENST00000530836 MRPL47Q9HD33 250 aaKnown RBP22.46■■□□□ 1.19
VPS28-212ENST00000530836 OSGEPQ9NPF4 335 aa22.46■■□□□ 1.19
VPS28-212ENST00000530836 HMGXB4Q9UGU5 601 aa22.46■■□□□ 1.19
VPS28-212ENST00000530836 SNX12Q9UMY4 172 aa22.46■■□□□ 1.19
VPS28-212ENST00000530836 WDR3Q9UNX4 943 aaKnown RBP eCLIP22.46■■□□□ 1.19
VPS28-212ENST00000530836 INPP5FQ9Y2H2 1132 aa22.46■■□□□ 1.19
VPS28-212ENST00000530836 HYOU1Q9Y4L1 999 aa22.46■■□□□ 1.19
VPS28-212ENST00000530836 MRPL42Q9Y6G3 142 aaKnown RBP22.46■■□□□ 1.19
VPS28-212ENST00000530836 SCINQ9Y6U3 715 aa22.46■■□□□ 1.19
VPS28-212ENST00000530836 COL4A6Q14031 1691 aa22.46■■□□□ 1.19
VPS28-212ENST00000530836 TMEM265A0A087WTH1 108 aa22.46■■□□□ 1.19
VPS28-212ENST00000530836 WARSP23381 471 aaKnown RBP22.46■■□□□ 1.19
VPS28-212ENST00000530836 GTF2F1P35269 517 aaKnown RBP eCLIP22.46■■□□□ 1.19
VPS28-212ENST00000530836 GNL1P36915 607 aaPredicted RBP22.46■■□□□ 1.19
VPS28-212ENST00000530836 UPP1Q16831 310 aa22.46■■□□□ 1.19
VPS28-212ENST00000530836 CRYBG2Q8N1P7 616 aa22.46■■□□□ 1.19
VPS28-212ENST00000530836 LRRC43Q8N309 656 aa22.46■■□□□ 1.19
VPS28-212ENST00000530836 CEP112Q8N8E3 955 aa22.46■■□□□ 1.19
VPS28-212ENST00000530836 SPATA18Q8TC71 538 aa22.46■■□□□ 1.19
VPS28-212ENST00000530836 CLP1Q92989 425 aaKnown RBP22.46■■□□□ 1.19
VPS28-212ENST00000530836 TNIP3Q96KP6 325 aa22.46■■□□□ 1.19
VPS28-212ENST00000530836 LCMT1Q9UIC8 334 aa22.46■■□□□ 1.19
VPS28-212ENST00000530836 STRIP2Q9ULQ0 834 aa22.46■■□□□ 1.19
VPS28-212ENST00000530836 ARHGEF37A1IGU5 675 aa22.45■■□□□ 1.18
VPS28-212ENST00000530836 A8MXQ7 604 aa22.45■■□□□ 1.18
VPS28-212ENST00000530836 O00370 1275 aa22.45■■□□□ 1.18
VPS28-212ENST00000530836 CYB561D2O14569 222 aa22.45■■□□□ 1.18
VPS28-212ENST00000530836 POMCP01189 267 aa22.45■■□□□ 1.18
VPS28-212ENST00000530836 CFHP08603 1231 aa22.45■■□□□ 1.18
VPS28-212ENST00000530836 LINC00271P0C7V0 271 aa22.45■■□□□ 1.18
VPS28-212ENST00000530836 CLCNKBP51801 687 aa22.45■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms