RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 SGK1O00141 431 aa22.36■■□□□ 1.17
VPS28-205ENST00000526204 PEX10O60683 326 aa22.36■■□□□ 1.17
VPS28-205ENST00000526204 IL18RAPO95256 599 aa22.36■■□□□ 1.17
VPS28-205ENST00000526204 PSMA2P25787 234 aa22.36■■□□□ 1.17
VPS28-205ENST00000526204 SF3A3Q12874 501 aaKnown RBP eCLIP22.36■■□□□ 1.173e-6■■■■□ 25.6
VPS28-205ENST00000526204 RASA2Q15283 850 aa22.36■■□□□ 1.17
VPS28-205ENST00000526204 WDR72Q3MJ13 1102 aa22.36■■□□□ 1.17
VPS28-205ENST00000526204 CELF3Q5SZQ8 465 aaKnown RBP22.36■■□□□ 1.17
VPS28-205ENST00000526204 EEPD1Q7L9B9 569 aa22.36■■□□□ 1.17
VPS28-205ENST00000526204 TRABD2AQ86V40 505 aa22.36■■□□□ 1.17
VPS28-205ENST00000526204 LRRC71Q8N4P6 559 aa22.36■■□□□ 1.17
VPS28-205ENST00000526204 MAGEC3Q8TD91 643 aa22.36■■□□□ 1.17
VPS28-205ENST00000526204 PHACTR1Q9C0D0 580 aa22.36■■□□□ 1.17
VPS28-205ENST00000526204 MLXIPLQ9NP71 852 aa22.36■■□□□ 1.17
VPS28-205ENST00000526204 ABCF3Q9NUQ8 709 aa22.36■■□□□ 1.17
VPS28-205ENST00000526204 C3orf70A6NLC5 250 aaPredicted RBP22.36■■□□□ 1.17
VPS28-205ENST00000526204 MGRN1O60291 552 aa22.36■■□□□ 1.17
VPS28-205ENST00000526204 SLC26A2P50443 739 aa22.36■■□□□ 1.17
VPS28-205ENST00000526204 DENND1BQ6P3S1 775 aa22.36■■□□□ 1.17
VPS28-205ENST00000526204 RHPN2Q8IUC4 686 aa22.36■■□□□ 1.17
VPS28-205ENST00000526204 THNSL1Q8IYQ7 743 aa22.36■■□□□ 1.17
VPS28-205ENST00000526204 CCDC63Q8NA47 563 aa22.36■■□□□ 1.17
VPS28-205ENST00000526204 DYNC1LI1Q9Y6G9 523 aaKnown RBP22.36■■□□□ 1.17
VPS28-205ENST00000526204 ETS1P14921 441 aa22.35■■□□□ 1.17
VPS28-205ENST00000526204 RFC1P35251 1148 aaPredicted RBP22.35■■□□□ 1.17
VPS28-205ENST00000526204 GSCP56915 257 aaPredicted RBP22.35■■□□□ 1.17
VPS28-205ENST00000526204 TMEM121Q9BTD3 319 aa22.35■■□□□ 1.17
VPS28-205ENST00000526204 PRPF4O43172 522 aaKnown RBP eCLIP22.34■■□□□ 1.17
VPS28-205ENST00000526204 CD19P15391 556 aa22.34■■□□□ 1.17
VPS28-205ENST00000526204 HIRAP54198 1017 aaPredicted RBP22.34■■□□□ 1.17
VPS28-205ENST00000526204 IRX3P78415 501 aaPredicted RBP22.34■■□□□ 1.17
VPS28-205ENST00000526204 SLC25A11Q02978 314 aaKnown RBP22.34■■□□□ 1.17
VPS28-205ENST00000526204 HSDL1Q3SXM5 330 aa22.34■■□□□ 1.17
VPS28-205ENST00000526204 PTPN20Q4JDL3 420 aa22.34■■□□□ 1.17
VPS28-205ENST00000526204 FAM133BQ5BKY9 247 aaKnown RBP22.34■■□□□ 1.17
VPS28-205ENST00000526204 NXF1Q9UBU9 619 aaKnown RBP22.34■■□□□ 1.17
VPS28-205ENST00000526204 PRKAG3Q9UGI9 489 aa22.34■■□□□ 1.17
VPS28-205ENST00000526204 SLC24A2Q9UI40 661 aa22.34■■□□□ 1.17
VPS28-205ENST00000526204 CSADQ9Y600 493 aa22.34■■□□□ 1.17
VPS28-205ENST00000526204 SLC25A27O95847 323 aa22.34■■□□□ 1.17
VPS28-205ENST00000526204 IFNB1P01574 187 aa22.34■■□□□ 1.17
VPS28-205ENST00000526204 GCAP28676 217 aa22.34■■□□□ 1.17
VPS28-205ENST00000526204 TMEM132AQ24JP5 1023 aa22.34■■□□□ 1.17
VPS28-205ENST00000526204 GALNTL6Q49A17 601 aa22.34■■□□□ 1.17
VPS28-205ENST00000526204 ZNF667Q5HYK9 610 aa22.34■■□□□ 1.17
VPS28-205ENST00000526204 CCDC125Q86Z20 511 aa22.34■■□□□ 1.17
VPS28-205ENST00000526204 ACSF2Q96CM8 615 aaPredicted RBP22.34■■□□□ 1.17
VPS28-205ENST00000526204 HAUS1Q96CS2 278 aa22.34■■□□□ 1.17
VPS28-205ENST00000526204 BCO2Q9BYV7 579 aa22.34■■□□□ 1.17
VPS28-205ENST00000526204 VPS37BQ9H9H4 285 aa22.34■■□□□ 1.17
VPS28-205ENST00000526204 RPF1Q9H9Y2 349 aaKnown RBP22.34■■□□□ 1.17
VPS28-205ENST00000526204 SMG5Q9UPR3 1016 aaKnown RBP22.34■■□□□ 1.17
VPS28-205ENST00000526204 WDR90Q96KV7 1748 aa22.33■■□□□ 1.17
VPS28-205ENST00000526204 GOLGA8SH3BPF8 625 aa22.33■■□□□ 1.17
VPS28-205ENST00000526204 INO80B-WBP1J3KQ70 363 aa22.33■■□□□ 1.17
VPS28-205ENST00000526204 ARIH2O95376 493 aa22.33■■□□□ 1.17
VPS28-205ENST00000526204 PSMC1P62191 440 aaKnown RBP22.33■■□□□ 1.17
VPS28-205ENST00000526204 ELF3P78545 371 aaPredicted RBP22.33■■□□□ 1.17
VPS28-205ENST00000526204 MTFR1Q15390 333 aa22.33■■□□□ 1.17
VPS28-205ENST00000526204 BBS12Q6ZW61 710 aa22.33■■□□□ 1.17
VPS28-205ENST00000526204 TRIM50Q86XT4 487 aa22.33■■□□□ 1.17
VPS28-205ENST00000526204 ZBED8Q8IZ13 594 aa22.33■■□□□ 1.17
VPS28-205ENST00000526204 PRCCQ92733 491 aaPredicted RBP22.33■■□□□ 1.17
VPS28-205ENST00000526204 INO80BQ9C086 356 aaPredicted RBP22.33■■□□□ 1.17
VPS28-205ENST00000526204 TNFSF13BQ9Y275 285 aa22.33■■□□□ 1.17
VPS28-205ENST00000526204 A0A0G2JMZ2 1700 aa22.33■■□□□ 1.17
VPS28-205ENST00000526204 LRCH4O75427 683 aa22.33■■□□□ 1.16
VPS28-205ENST00000526204 UBOX5O94941 541 aa22.33■■□□□ 1.16
VPS28-205ENST00000526204 TAC1P20366 129 aa22.33■■□□□ 1.16
VPS28-205ENST00000526204 ZNF268Q14587 947 aaPredicted RBP22.33■■□□□ 1.16
VPS28-205ENST00000526204 ACAP1Q15027 740 aa22.33■■□□□ 1.16
VPS28-205ENST00000526204 TAZQ16635 292 aa22.33■■□□□ 1.16
VPS28-205ENST00000526204 HIF1AQ16665 826 aa22.33■■□□□ 1.16
VPS28-205ENST00000526204 GADL1Q6ZQY3 521 aa22.33■■□□□ 1.16
VPS28-205ENST00000526204 GPC2Q8N158 579 aa22.33■■□□□ 1.16
VPS28-205ENST00000526204 NLRP4Q96MN2 994 aa22.33■■□□□ 1.16
VPS28-205ENST00000526204 KLHL14Q9P2G3 628 aa22.33■■□□□ 1.16
VPS28-205ENST00000526204 FETUBQ9UGM5 382 aa22.33■■□□□ 1.16
VPS28-205ENST00000526204 POC1B-GALNT4F8VUJ3 575 aa22.32■■□□□ 1.16
VPS28-205ENST00000526204 SMAPO00193 183 aa22.32■■□□□ 1.16
VPS28-205ENST00000526204 KRT19P08727 400 aa22.32■■□□□ 1.16
VPS28-205ENST00000526204 PDIA2Q13087 525 aaKnown RBP22.32■■□□□ 1.16
VPS28-205ENST00000526204 ACVR2BQ13705 512 aa22.32■■□□□ 1.16
VPS28-205ENST00000526204 FASTKD3Q14CZ7 662 aaKnown RBP22.32■■□□□ 1.16
VPS28-205ENST00000526204 PPIL6Q8IXY8 311 aa22.32■■□□□ 1.16
VPS28-205ENST00000526204 DHX37Q8IY37 1157 aaKnown RBP22.32■■□□□ 1.16
VPS28-205ENST00000526204 SMC6Q96SB8 1091 aa22.32■■□□□ 1.16
VPS28-205ENST00000526204 TRABDQ9H4I3 376 aa22.32■■□□□ 1.16
VPS28-205ENST00000526204 SMARCAD1Q9H4L7 1026 aa22.32■■□□□ 1.16
VPS28-205ENST00000526204 SYNCQ9H7C4 482 aa22.32■■□□□ 1.16
VPS28-205ENST00000526204 ZWILCHQ9H900 591 aa22.32■■□□□ 1.16
VPS28-205ENST00000526204 RXFP1Q9HBX9 757 aa22.32■■□□□ 1.16
VPS28-205ENST00000526204 POLIQ9UNA4 740 aa22.32■■□□□ 1.16
VPS28-205ENST00000526204 FARP1Q9Y4F1 1045 aaPredicted RBP22.32■■□□□ 1.16
VPS28-205ENST00000526204 SOCS7O14512 581 aa22.31■■□□□ 1.16
VPS28-205ENST00000526204 MAGEB2O15479 319 aa22.31■■□□□ 1.16
VPS28-205ENST00000526204 CST8O60676 142 aa22.31■■□□□ 1.16
VPS28-205ENST00000526204 ASMTLO95671 621 aa22.31■■□□□ 1.16
VPS28-205ENST00000526204 KRT15P19012 456 aa22.31■■□□□ 1.16
VPS28-205ENST00000526204 KDELR1P24390 212 aa22.31■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms