RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 NR2F2P24468 414 aa12.31□□□□□ -0.44
VCAN-212ENST00000515397 PRCPP42785 496 aa12.31□□□□□ -0.44
VCAN-212ENST00000515397 LHX1P48742 406 aa12.31□□□□□ -0.44
VCAN-212ENST00000515397 EPHA5P54756 1037 aa12.31□□□□□ -0.44
VCAN-212ENST00000515397 ADAM9Q13443 819 aa12.31□□□□□ -0.44
VCAN-212ENST00000515397 TAF12Q16514 161 aa12.31□□□□□ -0.44
VCAN-212ENST00000515397 CWF19L1Q69YN2 538 aaKnown RBP12.31□□□□□ -0.44
VCAN-212ENST00000515397 SPOPLQ6IQ16 392 aa12.31□□□□□ -0.44
VCAN-212ENST00000515397 MTSS1LQ765P7 747 aa12.31□□□□□ -0.44
VCAN-212ENST00000515397 LIMS2Q7Z4I7 341 aa12.31□□□□□ -0.44
VCAN-212ENST00000515397 GUF1Q8N442 669 aaKnown RBP12.31□□□□□ -0.44
VCAN-212ENST00000515397 SPPL2BQ8TCT7 592 aa12.31□□□□□ -0.44
VCAN-212ENST00000515397 PSMG2Q969U7 264 aa12.31□□□□□ -0.44
VCAN-212ENST00000515397 NXPE3Q969Y0 559 aa12.31□□□□□ -0.44
VCAN-212ENST00000515397 RSPRY1Q96DX4 576 aa12.31□□□□□ -0.44
VCAN-212ENST00000515397 SYT15Q9BQS2 421 aa12.31□□□□□ -0.44
VCAN-212ENST00000515397 XYLT2Q9H1B5 865 aa12.31□□□□□ -0.44
VCAN-212ENST00000515397 SNX25Q9H3E2 840 aa12.31□□□□□ -0.44
VCAN-212ENST00000515397 DPEP3Q9H4B8 488 aa12.31□□□□□ -0.44
VCAN-212ENST00000515397 SMYD3Q9H7B4 428 aa12.31□□□□□ -0.44
VCAN-212ENST00000515397 CRTAC1Q9NQ79 661 aa12.31□□□□□ -0.44
VCAN-212ENST00000515397 TRAF3IP3Q9Y228 551 aa12.31□□□□□ -0.44
VCAN-212ENST00000515397 FRMD4BQ9Y2L6 1034 aa12.31□□□□□ -0.44
VCAN-212ENST00000515397 CACNA1HO95180 2353 aa12.31□□□□□ -0.44
VCAN-212ENST00000515397 COL4A3Q01955 1670 aa12.3□□□□□ -0.44
VCAN-212ENST00000515397 BIN1O00499 593 aa12.3□□□□□ -0.44
VCAN-212ENST00000515397 CLDN5O00501 218 aa12.3□□□□□ -0.44
VCAN-212ENST00000515397 HMGA1P17096 107 aaKnown RBP12.3□□□□□ -0.44
VCAN-212ENST00000515397 WARSP23381 471 aaKnown RBP12.3□□□□□ -0.44
VCAN-212ENST00000515397 BDNFP23560 247 aa12.3□□□□□ -0.44
VCAN-212ENST00000515397 GCLMP48507 274 aa12.3□□□□□ -0.44
VCAN-212ENST00000515397 PMS1P54277 932 aaKnown RBP12.3□□□□□ -0.44
VCAN-212ENST00000515397 TNNC1P63316 161 aa12.3□□□□□ -0.44
VCAN-212ENST00000515397 CYP27A1Q02318 531 aa12.3□□□□□ -0.44
VCAN-212ENST00000515397 ORC1Q13415 861 aa12.3□□□□□ -0.44
VCAN-212ENST00000515397 NCOA4Q13772 614 aa12.3□□□□□ -0.44
VCAN-212ENST00000515397 SLC44A4Q53GD3 710 aa12.3□□□□□ -0.44
VCAN-212ENST00000515397 MDH1BQ5I0G3 518 aa12.3□□□□□ -0.44
VCAN-212ENST00000515397 GPR158Q5T848 1215 aa12.3□□□□□ -0.44
VCAN-212ENST00000515397 ASTLQ6HA08 431 aaPredicted RBP12.3□□□□□ -0.44
VCAN-212ENST00000515397 SV2AQ7L0J3 742 aa12.3□□□□□ -0.44
VCAN-212ENST00000515397 SPATA2LQ8IUW3 424 aaPredicted RBP12.3□□□□□ -0.44
VCAN-212ENST00000515397 TTC8Q8TAM2 541 aa12.3□□□□□ -0.44
VCAN-212ENST00000515397 SMARCE1Q969G3 411 aa12.3□□□□□ -0.44
VCAN-212ENST00000515397 ASB16Q96NS5 453 aa12.3□□□□□ -0.44
VCAN-212ENST00000515397 LRRC3BQ96PB8 259 aa12.3□□□□□ -0.44
VCAN-212ENST00000515397 PHOX2BQ99453 314 aa12.3□□□□□ -0.44
VCAN-212ENST00000515397 FOXQ1Q9C009 403 aa12.3□□□□□ -0.44
VCAN-212ENST00000515397 SDCBP2Q9H190 292 aa12.3□□□□□ -0.44
VCAN-212ENST00000515397 TBC1D17Q9HA65 648 aa12.3□□□□□ -0.44
VCAN-212ENST00000515397 IL21Q9HBE4 155 aa12.3□□□□□ -0.44
VCAN-212ENST00000515397 ZFP14Q9HCL3 533 aa12.3□□□□□ -0.44
VCAN-212ENST00000515397 WNT16Q9UBV4 365 aa12.3□□□□□ -0.44
VCAN-212ENST00000515397 TRIM49BA6NDI0 452 aa12.29□□□□□ -0.44
VCAN-212ENST00000515397 HEPACAM2A8MVW5 462 aa12.29□□□□□ -0.44
VCAN-212ENST00000515397 A8MXQ7 604 aa12.29□□□□□ -0.44
VCAN-212ENST00000515397 H0Y858 1186 aa12.29□□□□□ -0.44
VCAN-212ENST00000515397 KIF20AO95235 890 aa12.29□□□□□ -0.44
VCAN-212ENST00000515397 DCNP07585 359 aaKnown RBP12.29□□□□□ -0.44
VCAN-212ENST00000515397 RFX1P22670 979 aa12.29□□□□□ -0.44
VCAN-212ENST00000515397 PCSK1P29120 753 aa12.29□□□□□ -0.44
VCAN-212ENST00000515397 VAMP7P51809 220 aa12.29□□□□□ -0.44
VCAN-212ENST00000515397 CLDN10P78369 228 aa12.29□□□□□ -0.44
VCAN-212ENST00000515397 PPP3CAQ08209 521 aa12.29□□□□□ -0.44
VCAN-212ENST00000515397 TCF15Q12870 199 aa12.29□□□□□ -0.44
VCAN-212ENST00000515397 VEPH1Q14D04 833 aa12.29□□□□□ -0.44
VCAN-212ENST00000515397 NFE2Q16621 373 aaPredicted RBP12.29□□□□□ -0.44
VCAN-212ENST00000515397 ZNF699Q32M78 642 aa12.29□□□□□ -0.44
VCAN-212ENST00000515397 ZCWPW2Q504Y3 356 aa12.29□□□□□ -0.44
VCAN-212ENST00000515397 ANKRD40Q6AI12 368 aa12.29□□□□□ -0.44
VCAN-212ENST00000515397 FAM171BQ6P995 826 aa12.29□□□□□ -0.44
VCAN-212ENST00000515397 VITQ6UXI7 678 aa12.29□□□□□ -0.44
VCAN-212ENST00000515397 DPH6Q7L8W6 267 aa12.29□□□□□ -0.44
VCAN-212ENST00000515397 TMEM150AQ86TG1 271 aa12.29□□□□□ -0.44
VCAN-212ENST00000515397 ITIH5Q86UX2 942 aa12.29□□□□□ -0.44
VCAN-212ENST00000515397 ARID3BQ8IVW6 561 aaPredicted RBP12.29□□□□□ -0.44
VCAN-212ENST00000515397 FAM186BQ8IYM0 893 aa12.29□□□□□ -0.44
VCAN-212ENST00000515397 SMARCD2Q92925 531 aa12.29□□□□□ -0.44
VCAN-212ENST00000515397 MYLPFQ96A32 169 aa12.29□□□□□ -0.44
VCAN-212ENST00000515397 MKNK1Q9BUB5 465 aa12.29□□□□□ -0.44
VCAN-212ENST00000515397 ARHGEF3Q9NR81 526 aa12.29□□□□□ -0.44
VCAN-212ENST00000515397 SLC2A4RGQ9NR83 387 aa12.29□□□□□ -0.44
VCAN-212ENST00000515397 HEBP1Q9NRV9 189 aa12.29□□□□□ -0.44
VCAN-212ENST00000515397 FAM86C1Q9NVL1 165 aa12.29□□□□□ -0.44
VCAN-212ENST00000515397 MAGEC2Q9UBF1 373 aaPredicted RBP12.29□□□□□ -0.44
VCAN-212ENST00000515397 CDH9Q9ULB4 789 aa12.29□□□□□ -0.44
VCAN-212ENST00000515397 MTF2Q9Y483 593 aaPredicted RBP12.29□□□□□ -0.44
VCAN-212ENST00000515397 ASB3Q9Y575 518 aa12.29□□□□□ -0.44
VCAN-212ENST00000515397 TSC2P49815 1807 aa12.29□□□□□ -0.44
VCAN-212ENST00000515397 F5P12259 2224 aa12.28□□□□□ -0.44
VCAN-212ENST00000515397 SLC38A8A6NNN8 435 aa12.28□□□□□ -0.44
VCAN-212ENST00000515397 ECI2O75521 394 aa12.28□□□□□ -0.44
VCAN-212ENST00000515397 MICAL2O94851 1124 aa12.28□□□□□ -0.44
VCAN-212ENST00000515397 SMC2O95347 1197 aa12.28□□□□□ -0.44
VCAN-212ENST00000515397 HLA-DRAP01903 254 aa12.28□□□□□ -0.44
VCAN-212ENST00000515397 CD44P16070 742 aaKnown RBP12.28□□□□□ -0.44
VCAN-212ENST00000515397 PTPN1P18031 435 aaKnown RBP12.28□□□□□ -0.44
VCAN-212ENST00000515397 GDI1P31150 447 aa12.28□□□□□ -0.44
VCAN-212ENST00000515397 ATICP31939 592 aa12.28□□□□□ -0.44
VCAN-212ENST00000515397 GRIK1P39086 918 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms