RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 C11orf63Q6NUN7 778 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 ACOT1Q86TX2 421 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 GMCL1P1Q8NEA9 526 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 SLC7A14Q8TBB6 771 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 PARD3BQ8TEW8 1205 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 DNAJC9Q8WXX5 260 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 ULK4Q96C45 1275 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 DNAJC19Q96DA6 116 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 HACD3Q9P035 362 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 KLK14Q9P0G3 267 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 WHRNQ9P202 907 aa13.24□□□□□ -0.29
USP53-209ENST00000514665 DDX20Q9UHI6 824 aaKnown RBP13.24□□□□□ -0.29
USP53-209ENST00000514665 MTO1Q9Y2Z2 717 aaKnown RBP13.24□□□□□ -0.29
USP53-209ENST00000514665 GJB6O95452 261 aa13.23□□□□□ -0.29
USP53-209ENST00000514665 NPTXRO95502 500 aa13.23□□□□□ -0.29
USP53-209ENST00000514665 SERPINB9P50453 376 aa13.23□□□□□ -0.29
USP53-209ENST00000514665 LRRC23Q53EV4 343 aaPredicted RBP13.23□□□□□ -0.29
USP53-209ENST00000514665 BTNL9Q6UXG8 535 aa13.23□□□□□ -0.29
USP53-209ENST00000514665 C4orf19Q8IY42 314 aa13.23□□□□□ -0.29
USP53-209ENST00000514665 KIRREL3Q8IZU9 778 aa13.23□□□□□ -0.29
USP53-209ENST00000514665 TMC2Q8TDI7 906 aa13.23□□□□□ -0.29
USP53-209ENST00000514665 ZBTB18Q99592 522 aa13.23□□□□□ -0.29
USP53-209ENST00000514665 PPCSQ9HAB8 311 aa13.23□□□□□ -0.29
USP53-209ENST00000514665 CACYBPQ9HB71 228 aaKnown RBP13.23□□□□□ -0.29
USP53-209ENST00000514665 C20orf96Q9NUD7 363 aaPredicted RBP13.23□□□□□ -0.29
USP53-209ENST00000514665 NAALADL1Q9UQQ1 740 aa13.23□□□□□ -0.29
USP53-209ENST00000514665 HNRNPCL1O60812 293 aaKnown RBP13.23□□□□□ -0.29
USP53-209ENST00000514665 SPAG6O75602 509 aa13.23□□□□□ -0.29
USP53-209ENST00000514665 DGKIO75912 1065 aa13.23□□□□□ -0.29
USP53-209ENST00000514665 IL18RAPO95256 599 aa13.23□□□□□ -0.29
USP53-209ENST00000514665 PGK2P07205 417 aa13.23□□□□□ -0.29
USP53-209ENST00000514665 VCAM1P19320 739 aa13.23□□□□□ -0.29
USP53-209ENST00000514665 STIP1P31948 543 aaKnown RBP13.23□□□□□ -0.29
USP53-209ENST00000514665 FUT2Q10981 343 aa13.23□□□□□ -0.29
USP53-209ENST00000514665 PCSK7Q16549 785 aa13.23□□□□□ -0.29
USP53-209ENST00000514665 PRPF39Q86UA1 669 aaKnown RBP13.23□□□□□ -0.29
USP53-209ENST00000514665 FAM163AQ96GL9 167 aaPredicted RBP13.23□□□□□ -0.29
USP53-209ENST00000514665 TAS2R14Q9NYV8 317 aa13.23□□□□□ -0.29
USP53-209ENST00000514665 AURKCQ9UQB9 309 aa13.23□□□□□ -0.29
USP53-209ENST00000514665 REXO2Q9Y3B8 237 aaKnown RBP13.23□□□□□ -0.29
USP53-209ENST00000514665 PCDHGC5Q9Y5F6 944 aa13.23□□□□□ -0.29
USP53-209ENST00000514665 GOLGA4Q13439 2230 aaKnown RBP13.23□□□□□ -0.29
USP53-209ENST00000514665 EEF2KO00418 725 aaKnown RBP13.23□□□□□ -0.29
USP53-209ENST00000514665 CALCAP01258 141 aa13.23□□□□□ -0.29
USP53-209ENST00000514665 SETSIPP0DME0 302 aa13.23□□□□□ -0.29
USP53-209ENST00000514665 CYP2C9P11712 490 aa13.23□□□□□ -0.29
USP53-209ENST00000514665 GCLCP48506 637 aaPredicted RBP13.23□□□□□ -0.29
USP53-209ENST00000514665 SLC12A3P55017 1021 aa13.23□□□□□ -0.29
USP53-209ENST00000514665 KYAT1Q16773 422 aa13.23□□□□□ -0.29
USP53-209ENST00000514665 RNF168Q8IYW5 571 aaPredicted RBP13.23□□□□□ -0.29
USP53-209ENST00000514665 PTPRN2Q92932 1015 aa13.23□□□□□ -0.29
USP53-209ENST00000514665 NSL1Q96IY1 281 aa13.23□□□□□ -0.29
USP53-209ENST00000514665 MED15Q96RN5 788 aa13.23□□□□□ -0.29
USP53-209ENST00000514665 AGO4Q9HCK5 861 aaKnown RBP13.23□□□□□ -0.29
USP53-209ENST00000514665 GRID1Q9ULK0 1009 aa13.23□□□□□ -0.29
USP53-209ENST00000514665 SHPRHQ149N8 1683 aa13.22□□□□□ -0.29
USP53-209ENST00000514665 E5RI56 91 aa13.22□□□□□ -0.29
USP53-209ENST00000514665 ADCY3O60266 1144 aa13.22□□□□□ -0.29
USP53-209ENST00000514665 GH1P01241 217 aa13.22□□□□□ -0.29
USP53-209ENST00000514665 HMBSP08397 361 aa13.22□□□□□ -0.29
USP53-209ENST00000514665 C6orf222P0C671 652 aaPredicted RBP13.22□□□□□ -0.29
USP53-209ENST00000514665 SUPT20HL2P0C7V6 817 aa13.22□□□□□ -0.29
USP53-209ENST00000514665 MUTP22033 750 aa13.22□□□□□ -0.29
USP53-209ENST00000514665 ZNF235Q14590 738 aa13.22□□□□□ -0.29
USP53-209ENST00000514665 NBPF12Q5TAG4 269 aaPredicted RBP13.22□□□□□ -0.29
USP53-209ENST00000514665 STAMBPL1Q96FJ0 436 aa13.22□□□□□ -0.29
USP53-209ENST00000514665 YY1AP1Q9H869 796 aa13.22□□□□□ -0.29
USP53-209ENST00000514665 FAM8A1Q9UBU6 413 aa13.22□□□□□ -0.29
USP53-209ENST00000514665 COL5A2P05997 1499 aaPredicted RBP13.22□□□□□ -0.29
USP53-209ENST00000514665 NQO1P15559 274 aaKnown RBP13.22□□□□□ -0.29
USP53-209ENST00000514665 SPRP35270 261 aaPredicted RBP13.22□□□□□ -0.29
USP53-209ENST00000514665 NAMPTP43490 491 aa13.22□□□□□ -0.29
USP53-209ENST00000514665 RAP1GAPP47736 663 aa13.22□□□□□ -0.29
USP53-209ENST00000514665 DNAL1Q4LDG9 190 aa13.22□□□□□ -0.29
USP53-209ENST00000514665 RARS2Q5T160 578 aaKnown RBP13.22□□□□□ -0.29
USP53-209ENST00000514665 NOP9Q86U38 636 aaKnown RBP13.22□□□□□ -0.29
USP53-209ENST00000514665 TMEM139Q8IV31 216 aa13.22□□□□□ -0.29
USP53-209ENST00000514665 AGBL3Q8NEM8 1001 aa13.22□□□□□ -0.29
USP53-209ENST00000514665 IPMKQ8NFU5 416 aa13.22□□□□□ -0.29
USP53-209ENST00000514665 GIPC2Q8TF65 315 aa13.22□□□□□ -0.29
USP53-209ENST00000514665 ZNF606Q8WXB4 792 aa13.22□□□□□ -0.29
USP53-209ENST00000514665 MMTAG2Q9BU76 263 aaKnown RBP13.22□□□□□ -0.29
USP53-209ENST00000514665 SLC39A10Q9ULF5 831 aa13.22□□□□□ -0.29
USP53-209ENST00000514665 POLBP06746 335 aa13.22□□□□□ -0.29
USP53-209ENST00000514665 CPB1P15086 417 aa13.22□□□□□ -0.29
USP53-209ENST00000514665 EEF1DP29692 281 aaKnown RBP13.22□□□□□ -0.29
USP53-209ENST00000514665 AARSP49588 968 aaKnown RBP eCLIP13.22□□□□□ -0.29
USP53-209ENST00000514665 BACE1P56817 501 aa13.22□□□□□ -0.29
USP53-209ENST00000514665 PPP3CAQ08209 521 aa13.22□□□□□ -0.29
USP53-209ENST00000514665 MED21Q13503 144 aa13.22□□□□□ -0.29
USP53-209ENST00000514665 CNGA3Q16281 694 aa13.22□□□□□ -0.29
USP53-209ENST00000514665 CCNG2Q16589 344 aa13.22□□□□□ -0.29
USP53-209ENST00000514665 CLEC16AQ2KHT3 1053 aa13.22□□□□□ -0.29
USP53-209ENST00000514665 MCOLN2Q8IZK6 566 aa13.22□□□□□ -0.29
USP53-209ENST00000514665 ZSWIM2Q8NEG5 633 aa13.22□□□□□ -0.29
USP53-209ENST00000514665 CHST13Q8NET6 341 aa13.22□□□□□ -0.29
USP53-209ENST00000514665 SPDYE1Q8NFV5 336 aaPredicted RBP13.22□□□□□ -0.29
USP53-209ENST00000514665 BAP1Q92560 729 aa13.22□□□□□ -0.29
USP53-209ENST00000514665 EGFL8Q99944 293 aa13.22□□□□□ -0.29
USP53-209ENST00000514665 LRRC4BQ9NT99 713 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms