RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 WNT10BO00744 389 aa9.73□□□□□ -0.85
LIMCH1-215ENST00000512632 TBC1D12O60347 775 aa9.73□□□□□ -0.85
LIMCH1-215ENST00000512632 ATP5HO75947 161 aa9.73□□□□□ -0.85
LIMCH1-215ENST00000512632 CCND2P30279 289 aa9.73□□□□□ -0.85
LIMCH1-215ENST00000512632 RFC1P35251 1148 aaPredicted RBP9.73□□□□□ -0.85
LIMCH1-215ENST00000512632 CDKN2BP42772 138 aa9.73□□□□□ -0.85
LIMCH1-215ENST00000512632 ZBTB16Q05516 673 aa9.73□□□□□ -0.85
LIMCH1-215ENST00000512632 CAPRIN2Q6IMN6 1127 aaKnown RBP9.73□□□□□ -0.85
LIMCH1-215ENST00000512632 CEP128Q6ZU80 1094 aa9.73□□□□□ -0.85
LIMCH1-215ENST00000512632 APBB1IPQ7Z5R6 666 aaPredicted RBP9.73□□□□□ -0.85
LIMCH1-215ENST00000512632 PTPRN2Q92932 1015 aa9.73□□□□□ -0.85
LIMCH1-215ENST00000512632 RABGEF1Q9UJ41 708 aa9.73□□□□□ -0.85
LIMCH1-215ENST00000512632 SLX4Q8IY92 1834 aa9.73□□□□□ -0.85
LIMCH1-215ENST00000512632 TPBGLP0DKB5 382 aa9.73□□□□□ -0.85
LIMCH1-215ENST00000512632 GEMIN4P57678 1058 aaKnown RBP9.73□□□□□ -0.85
LIMCH1-215ENST00000512632 MCCD1P59942 119 aaPredicted RBP9.73□□□□□ -0.85
LIMCH1-215ENST00000512632 ORC1Q13415 861 aa9.73□□□□□ -0.85
LIMCH1-215ENST00000512632 PARP6Q2NL67 630 aa9.73□□□□□ -0.85
LIMCH1-215ENST00000512632 SNRNP48Q6IEG0 339 aaKnown RBP9.73□□□□□ -0.85
LIMCH1-215ENST00000512632 TDRPQ86YL5 185 aa9.73□□□□□ -0.85
LIMCH1-215ENST00000512632 FBXO36Q8NEA4 188 aa9.73□□□□□ -0.85
LIMCH1-215ENST00000512632 TFAP2BQ92481 460 aa9.73□□□□□ -0.85
LIMCH1-215ENST00000512632 PAFAH2Q99487 392 aa9.73□□□□□ -0.85
LIMCH1-215ENST00000512632 FZD1Q9UP38 647 aa9.73□□□□□ -0.85
LIMCH1-215ENST00000512632 THSD7AQ9UPZ6 1657 aa9.73□□□□□ -0.85
LIMCH1-215ENST00000512632 CD48P09326 243 aa9.73□□□□□ -0.85
LIMCH1-215ENST00000512632 RPL22P35268 128 aaKnown RBP9.73□□□□□ -0.85
LIMCH1-215ENST00000512632 BASP1P80723 227 aaKnown RBP9.73□□□□□ -0.85
LIMCH1-215ENST00000512632 RFWD3Q6PCD5 774 aa9.73□□□□□ -0.85
LIMCH1-215ENST00000512632 TMEM35BQ8NCS4 154 aa9.73□□□□□ -0.85
LIMCH1-215ENST00000512632 STK32AQ8WU08 396 aa9.73□□□□□ -0.85
LIMCH1-215ENST00000512632 RSAD2Q8WXG1 361 aa9.73□□□□□ -0.85
LIMCH1-215ENST00000512632 CPT1BQ92523 772 aa9.73□□□□□ -0.85
LIMCH1-215ENST00000512632 PRR11Q96HE9 360 aaPredicted RBP9.73□□□□□ -0.85
LIMCH1-215ENST00000512632 MTMR12Q9C0I1 747 aa9.73□□□□□ -0.85
LIMCH1-215ENST00000512632 SENP1Q9P0U3 644 aa9.73□□□□□ -0.85
LIMCH1-215ENST00000512632 HEY2Q9UBP5 337 aa9.73□□□□□ -0.85
LIMCH1-215ENST00000512632 NXF1Q9UBU9 619 aaKnown RBP9.73□□□□□ -0.85
LIMCH1-215ENST00000512632 CHMP2BQ9UQN3 213 aa9.73□□□□□ -0.85
LIMCH1-215ENST00000512632 EGFRP00533 1210 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 PSMA2P25787 234 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 HIRAP54198 1017 aaPredicted RBP9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 OSTNP61366 133 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 CLDN10P78369 228 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 FYB2Q5VWT5 728 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 RFX8Q6ZV50 586 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 CDR2LQ86X02 465 aaPredicted RBP9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 JOSD2Q8TAC2 188 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 LPAR1Q92633 364 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 TTC17Q96AE7 1141 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 FBXO6Q9NRD1 293 aaPredicted RBP9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 DRG1Q9Y295 367 aaKnown RBP9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 RBBP6Q7Z6E9 1792 aaKnown RBP9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 VWA5AO00534 786 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 PSEN1P49768 467 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 XKR3Q5GH77 459 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 EFHC2Q5JST6 749 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 DSTYKQ6XUX3 929 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 CLNKQ7Z7G1 428 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 UNC45BQ8IWX7 931 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 WDTC1Q8N5D0 677 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 FAM71DQ8N9W8 422 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 PCDH9Q9HC56 1237 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 CISHQ9NSE2 258 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 CYP39A1Q9NYL5 469 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 KANSL3Q9P2N6 904 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 SLC24A2Q9UI40 661 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 TROVE2P10155 538 aaKnown RBP eCLIP9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 ATP4AP20648 1035 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 TBXAS1P24557 533 aaPredicted RBP9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 IL1R2P27930 398 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 KHDC1Q4VXA5 237 aaKnown RBP9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 NAIF1Q69YI7 327 aaPredicted RBP9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 TMEM130Q8N3G9 435 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 YIPF3Q9GZM5 350 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 METTL5Q9NRN9 209 aaKnown RBP9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 ZNRF3Q9ULT6 936 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 SHOC2Q9UQ13 582 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 DKC1O60832 514 aaKnown RBP eCLIP9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 TMEM63AO94886 807 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 RASSF2P50749 326 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 CCNHP51946 323 aaPredicted RBP9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 ARL4CP56559 192 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 TFAMQ00059 246 aaKnown RBP9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 SP2Q02086 613 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 MCL1Q07820 350 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 TAF5Q15542 800 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 FAM83AQ86UY5 434 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 ATP11CQ8NB49 1132 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 SLC35B2Q8TB61 432 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 NKD2Q969F2 451 aaPredicted RBP9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 GPRASP2Q96D09 838 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 CGRRF1Q99675 332 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 MIPEPQ99797 713 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 WDR83Q9BRX9 315 aaKnown RBP9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 ARL8BQ9NVJ2 186 aa9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 ZNFX1Q9P2E3 1918 aaKnown RBP9.72□□□□□ -0.85
LIMCH1-215ENST00000512632 A0A0B4J269 797 aa9.71□□□□□ -0.85
LIMCH1-215ENST00000512632 ENO4A6NNW6 628 aa9.71□□□□□ -0.85
LIMCH1-215ENST00000512632 CALB1P05937 261 aa9.71□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms