RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 MYBL2P10244 700 aa11.26□□□□□ -0.61
LIMCH1-205ENST00000503057 KRT10P13645 584 aa11.26□□□□□ -0.61
LIMCH1-205ENST00000503057 MCUQ8NE86 351 aa11.26□□□□□ -0.61
LIMCH1-205ENST00000503057 TAS2R14Q9NYV8 317 aa11.26□□□□□ -0.61
LIMCH1-205ENST00000503057 TISP43B9A030 160 aa11.26□□□□□ -0.61
LIMCH1-205ENST00000503057 RPS6KA5O75582 802 aa11.26□□□□□ -0.61
LIMCH1-205ENST00000503057 NPTXRO95502 500 aa11.26□□□□□ -0.61
LIMCH1-205ENST00000503057 HSD17B4P51659 736 aa11.26□□□□□ -0.61
LIMCH1-205ENST00000503057 PTK6Q13882 451 aa11.26□□□□□ -0.61
LIMCH1-205ENST00000503057 PDK1Q15118 436 aa11.26□□□□□ -0.61
LIMCH1-205ENST00000503057 ERO1BQ86YB8 467 aa11.26□□□□□ -0.61
LIMCH1-205ENST00000503057 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.26□□□□□ -0.61
LIMCH1-205ENST00000503057 ERP27Q96DN0 273 aa11.26□□□□□ -0.61
LIMCH1-205ENST00000503057 MAGEB5Q9BZ81 275 aa11.26□□□□□ -0.61
LIMCH1-205ENST00000503057 MANSC1Q9H8J5 431 aa11.26□□□□□ -0.61
LIMCH1-205ENST00000503057 ALG13Q9NP73 1137 aaKnown RBP11.26□□□□□ -0.61
LIMCH1-205ENST00000503057 SLC38A7Q9NVC3 462 aa11.26□□□□□ -0.61
LIMCH1-205ENST00000503057 PCYOX1Q9UHG3 505 aa11.26□□□□□ -0.61
LIMCH1-205ENST00000503057 FIS1Q9Y3D6 152 aa11.26□□□□□ -0.61
LIMCH1-205ENST00000503057 SRRM3A6NNA2 597 aaPredicted RBP11.26□□□□□ -0.61
LIMCH1-205ENST00000503057 EEF2KO00418 725 aaKnown RBP11.26□□□□□ -0.61
LIMCH1-205ENST00000503057 ADRB2P07550 413 aa11.26□□□□□ -0.61
LIMCH1-205ENST00000503057 STAG3L1P0CL83 205 aa11.26□□□□□ -0.61
LIMCH1-205ENST00000503057 CETPP11597 493 aa11.26□□□□□ -0.61
LIMCH1-205ENST00000503057 ALDH5A1P51649 535 aaPredicted RBP11.26□□□□□ -0.61
LIMCH1-205ENST00000503057 ARPP19P56211 112 aa11.26□□□□□ -0.61
LIMCH1-205ENST00000503057 AP2B1P63010 937 aa11.26□□□□□ -0.61
LIMCH1-205ENST00000503057 SYCP2LQ5T4T6 812 aa11.26□□□□□ -0.61
LIMCH1-205ENST00000503057 JADE1Q6IE81 842 aa11.26□□□□□ -0.61
LIMCH1-205ENST00000503057 INPP4AQ96PE3 977 aaPredicted RBP11.26□□□□□ -0.61
LIMCH1-205ENST00000503057 SLC24A2Q9UI40 661 aa11.26□□□□□ -0.61
LIMCH1-205ENST00000503057 NOL4O94818 638 aa11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 LYPLA2O95372 231 aa11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 OTUD4Q01804 1114 aaKnown RBP11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 VSIG10LQ86VR7 867 aa11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 BRSK2Q8IWQ3 736 aa11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 TMEM161BQ8NDZ6 487 aa11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 ZNF606Q8WXB4 792 aa11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 TTC1Q99614 292 aa11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 FGFBP2Q9BYJ0 223 aa11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 TMEM134Q9H6X4 195 aa11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 DNAJC18Q9H819 358 aa11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 PCDH9Q9HC56 1237 aa11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 INPP5FQ9Y2H2 1132 aa11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 PMLP29590 882 aa11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 TTC8Q8TAM2 541 aa11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 AKT1S1Q96B36 256 aa11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 FAM161BQ96MY7 647 aa11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 SPATC1LQ9H0A9 340 aa11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 UBQLN1Q9UMX0 589 aaKnown RBP11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 SNED1Q8TER0 1413 aa11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 ZNF263O14978 683 aa11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 SMIM24O75264 130 aa11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 PDGFRBP09619 1106 aa11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 CCND1P24385 295 aa11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 GNL1P36915 607 aaPredicted RBP11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 SESN2P58004 480 aaPredicted RBP11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 RASIP1Q5U651 963 aa11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 URGCPQ8TCY9 931 aa11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 TMEM176AQ96HP8 235 aa11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 PORCNQ9H237 461 aa11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 XAB2Q9HCS7 855 aaKnown RBP11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 VCX3AQ9NNX9 186 aa11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 ADCY3O60266 1144 aa11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 DIAPH2O60879 1101 aa11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 KRT4P19013 534 aa11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 HNRNPH1P31943 449 aaKnown RBP11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 CLCN3P51790 818 aa11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 VCPP55072 806 aaKnown RBP11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 HSP90AA5PQ58FG0 334 aa11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 KATNAL2Q8IYT4 538 aa11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 ADAM33Q9BZ11 813 aa11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 MRPL40Q9NQ50 206 aaKnown RBP11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 SHOC2Q9UQ13 582 aa11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 N4BP2Q86UW6 1770 aaPredicted RBP11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 DYNC1LI2O43237 492 aaPredicted RBP11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 FDFT1P37268 417 aa11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 RAD23BP54727 409 aa11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 LONP2Q86WA8 852 aa11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 FBXO36Q8NEA4 188 aa11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 ADARB2Q9NS39 739 aaKnown RBP11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 THEGQ9P2T0 379 aa11.25□□□□□ -0.61
LIMCH1-205ENST00000503057 PPFIA2O75334 1257 aa11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 MCF2P10911 925 aa11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 GHRP10912 638 aa11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 SCTRP47872 440 aa11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 DEUP1Q05D60 604 aa11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 STX3Q13277 289 aa11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 BTBD8Q5XKL5 378 aa11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 CDR2LQ86X02 465 aaPredicted RBP11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 SCN4BQ8IWT1 228 aa11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 CNPY3Q9BT09 278 aa11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 NDE1Q9NXR1 346 aa11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 DDX20Q9UHI6 824 aaKnown RBP11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 ITGA11Q9UKX5 1188 aa11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 PHTF1Q9UMS5 762 aa11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 USP18Q9UMW8 372 aa11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 G3BP2Q9UN86 482 aaKnown RBP11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 SLURP2P0DP57 97 aa11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 RAP1GAPP47736 663 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms