RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 SCN1AP35498 2009 aa17.86■□□□□ 0.45
VIM-208ENST00000497849 HELZ2Q9BYK8 2649 aaKnown RBP17.85■□□□□ 0.45
VIM-208ENST00000497849 EPB41L2O43491 1005 aaKnown RBP17.85■□□□□ 0.45
VIM-208ENST00000497849 MYH11P35749 1972 aa17.85■□□□□ 0.45
VIM-208ENST00000497849 TNFSF9P41273 254 aa17.85■□□□□ 0.45
VIM-208ENST00000497849 MAPK8P45983 427 aa17.85■□□□□ 0.45
VIM-208ENST00000497849 MCL1Q07820 350 aa17.85■□□□□ 0.45
VIM-208ENST00000497849 LMAN2Q12907 356 aa17.85■□□□□ 0.45
VIM-208ENST00000497849 SEMA3BQ13214 749 aa17.85■□□□□ 0.45
VIM-208ENST00000497849 TAF12Q16514 161 aa17.85■□□□□ 0.45
VIM-208ENST00000497849 C8orf34Q49A92 452 aa17.85■□□□□ 0.45
VIM-208ENST00000497849 MDGA1Q8NFP4 955 aa17.85■□□□□ 0.45
VIM-208ENST00000497849 NTPCRQ9BSD7 190 aaKnown RBP17.85■□□□□ 0.45
VIM-208ENST00000497849 RUSC1Q9BVN2 902 aa17.85■□□□□ 0.45
VIM-208ENST00000497849 SFI1A8K8P3 1242 aa17.84■□□□□ 0.45
VIM-208ENST00000497849 LACTBL1A8MY62 500 aa17.84■□□□□ 0.45
VIM-208ENST00000497849 E9PMD0 336 aa17.84■□□□□ 0.45
VIM-208ENST00000497849 CLTAP09496 248 aa17.84■□□□□ 0.45
VIM-208ENST00000497849 HAPLN1P10915 354 aaPredicted RBP17.84■□□□□ 0.45
VIM-208ENST00000497849 ODC1P11926 461 aa17.84■□□□□ 0.45
VIM-208ENST00000497849 ENGP17813 658 aa17.84■□□□□ 0.45
VIM-208ENST00000497849 DDX6P26196 483 aaKnown RBP eCLIP17.84■□□□□ 0.45
VIM-208ENST00000497849 FAM193AP78312 1265 aa17.84■□□□□ 0.45
VIM-208ENST00000497849 ZNF268Q14587 947 aaPredicted RBP17.84■□□□□ 0.45
VIM-208ENST00000497849 MTF1Q14872 753 aa17.84■□□□□ 0.45
VIM-208ENST00000497849 ZNF174Q15697 407 aa17.84■□□□□ 0.45
VIM-208ENST00000497849 ZPBP2Q6X784 338 aa17.84■□□□□ 0.45
VIM-208ENST00000497849 PDZD3Q86UT5 571 aa17.84■□□□□ 0.45
VIM-208ENST00000497849 LRRTM3Q86VH5 581 aa17.84■□□□□ 0.45
VIM-208ENST00000497849 MON1AQ86VX9 555 aa17.84■□□□□ 0.45
VIM-208ENST00000497849 CHCHD4Q8N4Q1 142 aa17.84■□□□□ 0.45
VIM-208ENST00000497849 CPA6Q8N4T0 437 aa17.84■□□□□ 0.45
VIM-208ENST00000497849 NECAB1Q8N987 351 aa17.84■□□□□ 0.45
VIM-208ENST00000497849 OLIG1Q8TAK6 271 aa17.84■□□□□ 0.45
VIM-208ENST00000497849 USP33Q8TEY7 942 aa17.84■□□□□ 0.45
VIM-208ENST00000497849 EXOC4Q96A65 974 aa17.84■□□□□ 0.45
VIM-208ENST00000497849 DRC1Q96MC2 740 aa17.84■□□□□ 0.45
VIM-208ENST00000497849 GTF3C5Q9Y5Q8 519 aaPredicted RBP17.84■□□□□ 0.45
VIM-208ENST00000497849 UPK3BL1B0FP48 263 aa17.83■□□□□ 0.44
VIM-208ENST00000497849 UPK3BL2E5RIL1 263 aa17.83■□□□□ 0.44
VIM-208ENST00000497849 CLDN3O15551 220 aa17.83■□□□□ 0.44
VIM-208ENST00000497849 CYP11A1P05108 521 aa17.83■□□□□ 0.44
VIM-208ENST00000497849 HNRNPLP14866 589 aaKnown RBP eCLIP17.83■□□□□ 0.44
VIM-208ENST00000497849 STRN3Q13033 797 aa17.83■□□□□ 0.44
VIM-208ENST00000497849 RINT1Q6NUQ1 792 aa17.83■□□□□ 0.44
VIM-208ENST00000497849 C1orf186Q6ZWK4 172 aa17.83■□□□□ 0.44
VIM-208ENST00000497849 TMEM161BQ8NDZ6 487 aa17.83■□□□□ 0.44
VIM-208ENST00000497849 STKLD1Q8NE28 680 aa17.83■□□□□ 0.44
VIM-208ENST00000497849 OSCP1Q8WVF1 389 aa17.83■□□□□ 0.44
VIM-208ENST00000497849 FNBP1Q96RU3 617 aa17.83■□□□□ 0.44
VIM-208ENST00000497849 NUSAP1Q9BXS6 441 aaKnown RBP17.83■□□□□ 0.44
VIM-208ENST00000497849 C17orf75Q9HAS0 396 aa17.83■□□□□ 0.44
VIM-208ENST00000497849 DUS2Q9NX74 493 aaKnown RBP17.83■□□□□ 0.44
VIM-208ENST00000497849 WNT6Q9Y6F9 365 aa17.83■□□□□ 0.44
VIM-208ENST00000497849 ASH1LQ9NR48 2969 aaKnown RBP17.82■□□□□ 0.44
VIM-208ENST00000497849 PLXND1Q9Y4D7 1925 aa17.82■□□□□ 0.44
VIM-208ENST00000497849 H0Y626 953 aa17.82■□□□□ 0.44
VIM-208ENST00000497849 K7EQS6 105 aa17.82■□□□□ 0.44
VIM-208ENST00000497849 TNFRSF10BO14763 440 aa17.82■□□□□ 0.44
VIM-208ENST00000497849 TADA3O75528 432 aa17.82■□□□□ 0.44
VIM-208ENST00000497849 TRIM16O95361 564 aa17.82■□□□□ 0.44
VIM-208ENST00000497849 ZIC2O95409 532 aaPredicted RBP17.82■□□□□ 0.44
VIM-208ENST00000497849 MAPTP10636 758 aaKnown RBP17.82■□□□□ 0.44
VIM-208ENST00000497849 PTGER3P43115 390 aa17.82■□□□□ 0.44
VIM-208ENST00000497849 FXR2P51116 673 aaKnown RBP eCLIP17.82■□□□□ 0.44
VIM-208ENST00000497849 PPP2R3AQ06190 1150 aa17.82■□□□□ 0.44
VIM-208ENST00000497849 ZNF77Q15935 545 aa17.82■□□□□ 0.44
VIM-208ENST00000497849 EML3Q32P44 896 aa17.82■□□□□ 0.44
VIM-208ENST00000497849 C2orf27AQ580R0 203 aa17.82■□□□□ 0.44
VIM-208ENST00000497849 SPATA1Q5VX52 437 aa17.82■□□□□ 0.44
VIM-208ENST00000497849 ARMCX6Q7L4S7 300 aa17.82■□□□□ 0.44
VIM-208ENST00000497849 FRMD1Q8N878 549 aa17.82■□□□□ 0.44
VIM-208ENST00000497849 NSUN7Q8NE18 718 aaKnown RBP17.82■□□□□ 0.44
VIM-208ENST00000497849 SPPL2BQ8TCT7 592 aa17.82■□□□□ 0.44
VIM-208ENST00000497849 C2orf15Q8WU43 125 aaKnown RBP17.82■□□□□ 0.44
VIM-208ENST00000497849 RLN3Q8WXF3 142 aa17.82■□□□□ 0.44
VIM-208ENST00000497849 LRWD1Q9UFC0 647 aa17.82■□□□□ 0.44
VIM-208ENST00000497849 MBD1Q9UIS9 605 aaPredicted RBP17.82■□□□□ 0.44
VIM-208ENST00000497849 TCHHQ07283 1943 aa17.82■□□□□ 0.44
VIM-208ENST00000497849 ACACAQ13085 2346 aa17.81■□□□□ 0.44
VIM-208ENST00000497849 CEP192Q8TEP8 1941 aa17.81■□□□□ 0.44
VIM-208ENST00000497849 ANAPC1Q9H1A4 1944 aa17.81■□□□□ 0.44
VIM-208ENST00000497849 PLXNB3Q9ULL4 1909 aa17.81■□□□□ 0.44
VIM-208ENST00000497849 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa17.81■□□□□ 0.44
VIM-208ENST00000497849 XPOTO43592 962 aaKnown RBP17.81■□□□□ 0.44
VIM-208ENST00000497849 FAM189A1O60320 539 aa17.81■□□□□ 0.44
VIM-208ENST00000497849 JAK2O60674 1132 aa17.81■□□□□ 0.44
VIM-208ENST00000497849 ADRB2P07550 413 aa17.81■□□□□ 0.44
VIM-208ENST00000497849 P2RY2P41231 377 aa17.81■□□□□ 0.44
VIM-208ENST00000497849 GPR15P49685 360 aa17.81■□□□□ 0.44
VIM-208ENST00000497849 SEC13P55735 322 aa17.81■□□□□ 0.44
VIM-208ENST00000497849 FAM160A1Q05DH4 1040 aa17.81■□□□□ 0.44
VIM-208ENST00000497849 ENOX2Q16206 610 aaKnown RBP17.81■□□□□ 0.44
VIM-208ENST00000497849 CRY1Q16526 586 aa17.81■□□□□ 0.44
VIM-208ENST00000497849 COL28A1Q2UY09 1125 aa17.81■□□□□ 0.44
VIM-208ENST00000497849 C9orf57Q5W0N0 161 aa17.81■□□□□ 0.44
VIM-208ENST00000497849 SLC23A3Q6PIS1 610 aa17.81■□□□□ 0.44
VIM-208ENST00000497849 TMEM92Q6UXU6 159 aa17.81■□□□□ 0.44
VIM-208ENST00000497849 RAB44Q7Z6P3 723 aaPredicted RBP17.81■□□□□ 0.44
VIM-208ENST00000497849 SYT12Q8IV01 421 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms