RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.62□□□□□ -0.23
SKA1-205ENST00000494518 KPNA7A9QM74 516 aa13.62□□□□□ -0.23
SKA1-205ENST00000494518 HCRTO43612 131 aa13.62□□□□□ -0.23
SKA1-205ENST00000494518 EXTL3O43909 919 aa13.62□□□□□ -0.23
SKA1-205ENST00000494518 PRPF40AO75400 957 aaKnown RBP13.62□□□□□ -0.23
SKA1-205ENST00000494518 PPP1R37O75864 691 aa13.62□□□□□ -0.23
SKA1-205ENST00000494518 GCNT3O95395 438 aa13.62□□□□□ -0.23
SKA1-205ENST00000494518 ITGB3P05106 788 aa13.62□□□□□ -0.23
SKA1-205ENST00000494518 RETP07949 1114 aa13.62□□□□□ -0.23
SKA1-205ENST00000494518 ARSAP15289 507 aa13.62□□□□□ -0.23
SKA1-205ENST00000494518 CASP5P51878 434 aa13.62□□□□□ -0.23
SKA1-205ENST00000494518 NLRP12P59046 1061 aa13.62□□□□□ -0.23
SKA1-205ENST00000494518 BFSP1Q12934 665 aa13.62□□□□□ -0.23
SKA1-205ENST00000494518 CCINQ13939 588 aa13.62□□□□□ -0.23
SKA1-205ENST00000494518 CCDC6Q16204 474 aa13.62□□□□□ -0.23
SKA1-205ENST00000494518 ITPRIPL2Q3MIP1 535 aa13.62□□□□□ -0.23
SKA1-205ENST00000494518 SV2CQ496J9 727 aa13.62□□□□□ -0.23
SKA1-205ENST00000494518 DGKKQ5KSL6 1271 aa13.62□□□□□ -0.23
SKA1-205ENST00000494518 NAIF1Q69YI7 327 aaPredicted RBP13.62□□□□□ -0.23
SKA1-205ENST00000494518 TXNDC8Q6A555 127 aa13.62□□□□□ -0.23
SKA1-205ENST00000494518 C1orf228Q6PIY5 440 aa13.62□□□□□ -0.23
SKA1-205ENST00000494518 TMEM150AQ86TG1 271 aa13.62□□□□□ -0.23
SKA1-205ENST00000494518 LONP2Q86WA8 852 aa13.62□□□□□ -0.23
SKA1-205ENST00000494518 CMTM8Q8IZV2 173 aa13.62□□□□□ -0.23
SKA1-205ENST00000494518 RIN3Q8TB24 985 aa13.62□□□□□ -0.23
SKA1-205ENST00000494518 ZNF560Q96MR9 790 aa13.62□□□□□ -0.23
SKA1-205ENST00000494518 CNTNAP3BQ96NU0 1288 aa13.62□□□□□ -0.23
SKA1-205ENST00000494518 FGFBP2Q9BYJ0 223 aa13.62□□□□□ -0.23
SKA1-205ENST00000494518 CNTNAP3Q9BZ76 1288 aa13.62□□□□□ -0.23
SKA1-205ENST00000494518 ST6GALNAC4Q9H4F1 302 aa13.62□□□□□ -0.23
SKA1-205ENST00000494518 EBF3Q9H4W6 596 aa13.62□□□□□ -0.23
SKA1-205ENST00000494518 UPF2Q9HAU5 1272 aaKnown RBP13.62□□□□□ -0.23
SKA1-205ENST00000494518 HPS4Q9NQG7 708 aa13.62□□□□□ -0.23
SKA1-205ENST00000494518 OBP2AQ9NY56 170 aa13.62□□□□□ -0.23
SKA1-205ENST00000494518 HSFX1Q9UBD0 423 aa13.62□□□□□ -0.23
SKA1-205ENST00000494518 FBXO2Q9UK22 296 aaPredicted RBP13.62□□□□□ -0.23
SKA1-205ENST00000494518 AGAP1Q9UPQ3 857 aa13.62□□□□□ -0.23
SKA1-205ENST00000494518 PCDHB5Q9Y5E4 795 aa13.62□□□□□ -0.23
SKA1-205ENST00000494518 PTPRDP23468 1912 aa13.62□□□□□ -0.23
SKA1-205ENST00000494518 OTOL1A6NHN0 477 aaPredicted RBP13.61□□□□□ -0.23
SKA1-205ENST00000494518 GDF9O60383 454 aa13.61□□□□□ -0.23
SKA1-205ENST00000494518 IL18RAPO95256 599 aa13.61□□□□□ -0.23
SKA1-205ENST00000494518 IDEP14735 1019 aa13.61□□□□□ -0.23
SKA1-205ENST00000494518 HMGA1P17096 107 aaKnown RBP13.61□□□□□ -0.23
SKA1-205ENST00000494518 SDHBP21912 280 aa13.61□□□□□ -0.23
SKA1-205ENST00000494518 PAX3P23760 479 aa13.61□□□□□ -0.23
SKA1-205ENST00000494518 ABCD1P33897 745 aa13.61□□□□□ -0.23
SKA1-205ENST00000494518 AVPR1AP37288 418 aa13.61□□□□□ -0.23
SKA1-205ENST00000494518 PLCB2Q00722 1185 aa13.61□□□□□ -0.23
SKA1-205ENST00000494518 TSPY1Q01534 308 aa13.61□□□□□ -0.23
SKA1-205ENST00000494518 PTPAQ15257 358 aa13.61□□□□□ -0.23
SKA1-205ENST00000494518 DDR2Q16832 855 aa13.61□□□□□ -0.23
SKA1-205ENST00000494518 RRAGBQ5VZM2 374 aa13.61□□□□□ -0.23
SKA1-205ENST00000494518 LMBRD2Q68DH5 695 aaPredicted RBP13.61□□□□□ -0.23
SKA1-205ENST00000494518 OSTM1Q86WC4 334 aa13.61□□□□□ -0.23
SKA1-205ENST00000494518 DCP1BQ8IZD4 617 aaKnown RBP13.61□□□□□ -0.23
SKA1-205ENST00000494518 PDCL2Q8N4E4 241 aa13.61□□□□□ -0.23
SKA1-205ENST00000494518 FAM160A2Q8N612 972 aaPredicted RBP13.61□□□□□ -0.23
SKA1-205ENST00000494518 C1orf127Q8N9H9 656 aa13.61□□□□□ -0.23
SKA1-205ENST00000494518 C2orf15Q8WU43 125 aaKnown RBP13.61□□□□□ -0.23
SKA1-205ENST00000494518 USP13Q92995 863 aaPredicted RBP13.61□□□□□ -0.23
SKA1-205ENST00000494518 CHFRQ96EP1 664 aa13.61□□□□□ -0.23
SKA1-205ENST00000494518 RTKNQ9BST9 563 aa13.61□□□□□ -0.23
SKA1-205ENST00000494518 PANK2Q9BZ23 570 aa13.61□□□□□ -0.23
SKA1-205ENST00000494518 PCIF1Q9H4Z3 704 aa13.61□□□□□ -0.23
SKA1-205ENST00000494518 TRPC7Q9HCX4 862 aa13.61□□□□□ -0.23
SKA1-205ENST00000494518 SEMA4GQ9NTN9 838 aa13.61□□□□□ -0.23
SKA1-205ENST00000494518 THG1LQ9NWX6 298 aaKnown RBP13.61□□□□□ -0.23
SKA1-205ENST00000494518 CCDC39Q9UFE4 941 aa13.61□□□□□ -0.23
SKA1-205ENST00000494518 L1RE1Q9UN81 338 aa13.61□□□□□ -0.23
SKA1-205ENST00000494518 ABCA7Q8IZY2 2146 aa13.6□□□□□ -0.23
SKA1-205ENST00000494518 TADA3O75528 432 aa13.6□□□□□ -0.23
SKA1-205ENST00000494518 F11P03951 625 aa13.6□□□□□ -0.23
SKA1-205ENST00000494518 KRT19P08727 400 aa13.6□□□□□ -0.23
SKA1-205ENST00000494518 CYP2F1P24903 491 aa13.6□□□□□ -0.23
SKA1-205ENST00000494518 POSTNQ15063 836 aa13.6□□□□□ -0.23
SKA1-205ENST00000494518 L1TD1Q5T7N2 865 aaKnown RBP13.6□□□□□ -0.23
SKA1-205ENST00000494518 FSTL4Q6MZW2 842 aa13.6□□□□□ -0.23
SKA1-205ENST00000494518 PRR23CQ6ZRP0 262 aa13.6□□□□□ -0.23
SKA1-205ENST00000494518 SV2BQ7L1I2 683 aa13.6□□□□□ -0.23
SKA1-205ENST00000494518 BRSK2Q8IWQ3 736 aa13.6□□□□□ -0.23
SKA1-205ENST00000494518 SYCP3Q8IZU3 236 aa13.6□□□□□ -0.23
SKA1-205ENST00000494518 MRPS31Q92665 395 aaKnown RBP13.6□□□□□ -0.23
SKA1-205ENST00000494518 HVCN1Q96D96 273 aa13.6□□□□□ -0.23
SKA1-205ENST00000494518 DNAJC19Q96DA6 116 aa13.6□□□□□ -0.23
SKA1-205ENST00000494518 ACCSQ96QU6 501 aa13.6□□□□□ -0.23
SKA1-205ENST00000494518 CBWD1Q9BRT8 395 aa13.6□□□□□ -0.23
SKA1-205ENST00000494518 DDX43Q9NXZ2 648 aaKnown RBP13.6□□□□□ -0.23
SKA1-205ENST00000494518 RBAKQ9NYW8 714 aaPredicted RBP13.6□□□□□ -0.23
SKA1-205ENST00000494518 STK17AQ9UEE5 414 aa13.6□□□□□ -0.23
SKA1-205ENST00000494518 KMT2BQ9UMN6 2715 aaPredicted RBP13.6□□□□□ -0.23
SKA1-205ENST00000494518 LAMA1P25391 3075 aa13.6□□□□□ -0.23
SKA1-205ENST00000494518 NUP205Q92621 2012 aa13.59□□□□□ -0.23
SKA1-205ENST00000494518 AXIN1O15169 862 aa13.59□□□□□ -0.23
SKA1-205ENST00000494518 HUS1O60921 280 aa13.59□□□□□ -0.23
SKA1-205ENST00000494518 PRPF6O94906 941 aaKnown RBP13.59□□□□□ -0.23
SKA1-205ENST00000494518 PAPSS2O95340 614 aaPredicted RBP13.59□□□□□ -0.23
SKA1-205ENST00000494518 EGFP01133 1207 aa13.59□□□□□ -0.23
SKA1-205ENST00000494518 GAP43P17677 238 aa13.59□□□□□ -0.23
SKA1-205ENST00000494518 WEE1P30291 646 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms