RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 CALB2P22676 271 aa17.06■□□□□ 0.32
CCDC88B-209ENST00000494080 RRM1P23921 792 aa17.06■□□□□ 0.32
CCDC88B-209ENST00000494080 EPHB2P29323 1055 aa17.06■□□□□ 0.32
CCDC88B-209ENST00000494080 EIF3EP60228 445 aaKnown RBP17.06■□□□□ 0.32
CCDC88B-209ENST00000494080 CBWD6Q4V339 395 aa17.06■□□□□ 0.32
CCDC88B-209ENST00000494080 CBWD3Q5JTY5 395 aa17.06■□□□□ 0.32
CCDC88B-209ENST00000494080 CBWD5Q5RIA9 395 aa17.06■□□□□ 0.32
CCDC88B-209ENST00000494080 ACAD10Q6JQN1 1059 aa17.06■□□□□ 0.32
CCDC88B-209ENST00000494080 MCUQ8NE86 351 aa17.06■□□□□ 0.32
CCDC88B-209ENST00000494080 PDZD8Q8NEN9 1154 aa17.06■□□□□ 0.32
CCDC88B-209ENST00000494080 IL31RAQ8NI17 732 aa17.06■□□□□ 0.32
CCDC88B-209ENST00000494080 ZSWIM1Q9BR11 485 aa17.06■□□□□ 0.32
CCDC88B-209ENST00000494080 PRMT7Q9NVM4 692 aaPredicted RBP17.06■□□□□ 0.32
CCDC88B-209ENST00000494080 ITGB3P05106 788 aa17.06■□□□□ 0.32
CCDC88B-209ENST00000494080 DAB2IPQ5VWQ8 1189 aa17.06■□□□□ 0.32
CCDC88B-209ENST00000494080 C1orf186Q6ZWK4 172 aa17.06■□□□□ 0.32
CCDC88B-209ENST00000494080 MED15Q96RN5 788 aa17.06■□□□□ 0.32
CCDC88B-209ENST00000494080 GRIN2DO15399 1336 aa17.06■□□□□ 0.32
CCDC88B-209ENST00000494080 FRMPD4Q14CM0 1322 aa17.06■□□□□ 0.32
CCDC88B-209ENST00000494080 PSMD10O75832 226 aa17.06■□□□□ 0.32
CCDC88B-209ENST00000494080 TAF1BQ53T94 588 aaPredicted RBP17.06■□□□□ 0.32
CCDC88B-209ENST00000494080 FKBP1CQ5VVH2 108 aa17.06■□□□□ 0.32
CCDC88B-209ENST00000494080 SYDE1Q6ZW31 735 aaPredicted RBP17.06■□□□□ 0.32
CCDC88B-209ENST00000494080 STK32AQ8WU08 396 aa17.06■□□□□ 0.32
CCDC88B-209ENST00000494080 ANKRD27Q96NW4 1050 aa17.06■□□□□ 0.32
CCDC88B-209ENST00000494080 C2CD2Q9Y426 696 aa17.06■□□□□ 0.32
CCDC88B-209ENST00000494080 OGTO15294 1046 aa17.06■□□□□ 0.32
CCDC88B-209ENST00000494080 RIPK2O43353 540 aa17.06■□□□□ 0.32
CCDC88B-209ENST00000494080 CYP3A4P08684 503 aa17.06■□□□□ 0.32
CCDC88B-209ENST00000494080 BTKQ06187 659 aa17.06■□□□□ 0.32
CCDC88B-209ENST00000494080 NPY5RQ15761 445 aa17.06■□□□□ 0.32
CCDC88B-209ENST00000494080 LY6KQ17RY6 165 aa17.06■□□□□ 0.32
CCDC88B-209ENST00000494080 MTDHQ86UE4 582 aaKnown RBP17.06■□□□□ 0.32
CCDC88B-209ENST00000494080 SPATC1LQ9H0A9 340 aa17.06■□□□□ 0.32
CCDC88B-209ENST00000494080 SIK2Q9H0K1 926 aa17.06■□□□□ 0.32
CCDC88B-209ENST00000494080 PSMC3IPQ9P2W1 217 aaPredicted RBP17.06■□□□□ 0.32
CCDC88B-209ENST00000494080 AFG3L2Q9Y4W6 797 aa17.06■□□□□ 0.32
CCDC88B-209ENST00000494080 ZNF263O14978 683 aa17.05■□□□□ 0.32
CCDC88B-209ENST00000494080 KRT38O76015 456 aa17.05■□□□□ 0.32
CCDC88B-209ENST00000494080 NAMPTP43490 491 aa17.05■□□□□ 0.32
CCDC88B-209ENST00000494080 GSCP56915 257 aaPredicted RBP17.05■□□□□ 0.32
CCDC88B-209ENST00000494080 ROR1Q01973 937 aa17.05■□□□□ 0.32
CCDC88B-209ENST00000494080 RPS6KA2Q15349 733 aa17.05■□□□□ 0.32
CCDC88B-209ENST00000494080 CYTH1Q15438 398 aa17.05■□□□□ 0.32
CCDC88B-209ENST00000494080 GLRA4Q5JXX5 417 aa17.05■□□□□ 0.32
CCDC88B-209ENST00000494080 FAM43BQ6ZT52 329 aaPredicted RBP17.05■□□□□ 0.32
CCDC88B-209ENST00000494080 INPP4AQ96PE3 977 aaPredicted RBP17.05■□□□□ 0.32
CCDC88B-209ENST00000494080 CCDC68Q9H2F9 335 aa17.05■□□□□ 0.32
CCDC88B-209ENST00000494080 STAP1Q9ULZ2 295 aa17.05■□□□□ 0.32
CCDC88B-209ENST00000494080 BCL9LQ86UU0 1499 aa17.05■□□□□ 0.32
CCDC88B-209ENST00000494080 GTPBP10A4D1E9 387 aaKnown RBP17.05■□□□□ 0.32
CCDC88B-209ENST00000494080 CYP2C9P11712 490 aa17.05■□□□□ 0.32
CCDC88B-209ENST00000494080 TAP1Q03518 808 aa17.05■□□□□ 0.32
CCDC88B-209ENST00000494080 C9orf131Q5VYM1 1079 aa17.05■□□□□ 0.32
CCDC88B-209ENST00000494080 HEATR6Q6AI08 1181 aaKnown RBP17.05■□□□□ 0.32
CCDC88B-209ENST00000494080 GRAMD4Q6IC98 578 aa17.05■□□□□ 0.32
CCDC88B-209ENST00000494080 MFN1Q8IWA4 741 aa17.05■□□□□ 0.32
CCDC88B-209ENST00000494080 EIF1ADQ8N9N8 165 aaKnown RBP17.05■□□□□ 0.32
CCDC88B-209ENST00000494080 RNPEPL1Q9HAU8 725 aa17.05■□□□□ 0.32
CCDC88B-209ENST00000494080 DDX3XO00571 662 aaKnown RBP eCLIP17.05■□□□□ 0.32
CCDC88B-209ENST00000494080 ITGB5P18084 799 aa17.05■□□□□ 0.32
CCDC88B-209ENST00000494080 GARTP22102 1010 aa17.05■□□□□ 0.32
CCDC88B-209ENST00000494080 CYP24A1Q07973 514 aa17.05■□□□□ 0.32
CCDC88B-209ENST00000494080 ARHGAP22Q7Z5H3 698 aa17.05■□□□□ 0.32
CCDC88B-209ENST00000494080 RCOR2Q8IZ40 523 aa17.05■□□□□ 0.32
CCDC88B-209ENST00000494080 ATXN2LQ8WWM7 1075 aaKnown RBP17.05■□□□□ 0.32
CCDC88B-209ENST00000494080 EFHD1Q9BUP0 239 aa17.05■□□□□ 0.32
CCDC88B-209ENST00000494080 IKZF4Q9H2S9 585 aa17.05■□□□□ 0.32
CCDC88B-209ENST00000494080 TRIM33Q9UPN9 1127 aa17.05■□□□□ 0.32
CCDC88B-209ENST00000494080 LRCH1Q9Y2L9 728 aa17.05■□□□□ 0.32
CCDC88B-209ENST00000494080 RPL21P46778 160 aaKnown RBP17.04■□□□□ 0.32
CCDC88B-209ENST00000494080 PSEN1P49768 467 aa17.04■□□□□ 0.32
CCDC88B-209ENST00000494080 CNGA3Q16281 694 aa17.04■□□□□ 0.32
CCDC88B-209ENST00000494080 TATDN1Q6P1N9 297 aa17.04■□□□□ 0.32
CCDC88B-209ENST00000494080 C4orf50Q6ZRC1 276 aa17.04■□□□□ 0.32
CCDC88B-209ENST00000494080 ARHGEF19Q8IW93 802 aa17.04■□□□□ 0.32
CCDC88B-209ENST00000494080 PAIP2BQ9ULR5 123 aaKnown RBP17.04■□□□□ 0.32
CCDC88B-209ENST00000494080 KCPQ6ZWJ8 1503 aa17.04■□□□□ 0.32
CCDC88B-209ENST00000494080 CBX6O95503 412 aa17.04■□□□□ 0.32
CCDC88B-209ENST00000494080 SRGAP2BP0DMP2 458 aa17.04■□□□□ 0.32
CCDC88B-209ENST00000494080 FNTAP49354 379 aa17.04■□□□□ 0.32
CCDC88B-209ENST00000494080 ZNF513Q8N8E2 541 aaPredicted RBP17.04■□□□□ 0.32
CCDC88B-209ENST00000494080 FEZF2Q8TBJ5 459 aa17.04■□□□□ 0.32
CCDC88B-209ENST00000494080 KAT5Q92993 513 aa17.04■□□□□ 0.32
CCDC88B-209ENST00000494080 CENPTQ96BT3 561 aa17.04■□□□□ 0.32
CCDC88B-209ENST00000494080 HPDLQ96IR7 371 aa17.04■□□□□ 0.32
CCDC88B-209ENST00000494080 ADARB2Q9NS39 739 aaKnown RBP17.04■□□□□ 0.32
CCDC88B-209ENST00000494080 TLK1Q9UKI8 766 aa17.04■□□□□ 0.32
CCDC88B-209ENST00000494080 CST8O60676 142 aa17.04■□□□□ 0.32
CCDC88B-209ENST00000494080 ZBTB17Q13105 803 aa17.04■□□□□ 0.32
CCDC88B-209ENST00000494080 TTC39CQ8N584 583 aa17.04■□□□□ 0.32
CCDC88B-209ENST00000494080 ETNPPLQ8TBG4 499 aa17.04■□□□□ 0.32
CCDC88B-209ENST00000494080 P2RX7Q99572 595 aaKnown RBP17.04■□□□□ 0.32
CCDC88B-209ENST00000494080 ADM5C9JUS6 153 aa17.04■□□□□ 0.32
CCDC88B-209ENST00000494080 SPATA31C1P0DKV0 1188 aa17.04■□□□□ 0.32
CCDC88B-209ENST00000494080 ATP6V1B1P15313 513 aa17.04■□□□□ 0.32
CCDC88B-209ENST00000494080 KRT4P19013 534 aa17.04■□□□□ 0.32
CCDC88B-209ENST00000494080 EEF1B2P24534 225 aaKnown RBP17.04■□□□□ 0.32
CCDC88B-209ENST00000494080 DNAL1Q4LDG9 190 aa17.04■□□□□ 0.32
CCDC88B-209ENST00000494080 FGFBP2Q9BYJ0 223 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms