RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 DKK2Q9UBU2 259 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 SLC45A2Q9UMX9 530 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 RAD54BQ9Y620 910 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 NPHP4O75161 1426 aaPredicted RBP2.73□□□□□ -1.97
HMGB1-208ENST00000490788 CNTLNQ9NXG0 1405 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 RICTORQ6R327 1708 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 ZMYM4Q5VZL5 1548 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 MAST3O60307 1309 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 USP19O94966 1318 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 LRRC9Q6ZRR7 1453 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 HECW1Q76N89 1606 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 A0A0B4J269 797 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 GRID2IPA4D2P6 1211 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 GOLGA6CA6NDK9 693 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 GOLGA6BA6NDN3 693 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 ZAR1LA6NP61 321 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 NT5C1B-RDH14C9J2C7 533 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 E7ENX8 843 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 M0QYG6 137 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 CTNND1O60716 968 aaKnown RBP2.72□□□□□ -1.97
HMGB1-208ENST00000490788 RFPL1O75677 317 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 POLR1AO95602 1720 aaPredicted RBP2.72□□□□□ -1.97
HMGB1-208ENST00000490788 LMNAP02545 664 aaKnown RBP2.72□□□□□ -1.97
HMGB1-208ENST00000490788 AHSGP02765 367 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 GOLGA6DP0CG33 693 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 NPTX2P47972 431 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 TAP2Q03519 686 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 ITIH3Q06033 890 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 TUBB3Q13509 450 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 FGL2Q14314 439 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 ZNF267Q14586 743 aaPredicted RBP2.72□□□□□ -1.97
HMGB1-208ENST00000490788 PLS1Q14651 629 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 HLXQ14774 488 aaPredicted RBP2.72□□□□□ -1.97
HMGB1-208ENST00000490788 KIF22Q14807 665 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 GPR162Q16538 588 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 PLEKHG6Q3KR16 790 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 MINDY4Q4G0A6 757 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 AKNAD1Q5T1N1 836 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 KAZNQ674X7 775 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 USP37Q86T82 979 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 FAM90A1Q86YD7 464 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 TPH2Q8IWU9 490 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 DNAJC10Q8IXB1 793 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 ADGRG5Q8IZF4 528 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 DNAJC5GQ8N7S2 189 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 PSD4Q8NDX1 1056 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 KLHDC4Q8TBB5 520 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 SSH3Q8TE77 659 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 DIS3LQ8TF46 1054 aaKnown RBP2.72□□□□□ -1.97
HMGB1-208ENST00000490788 LINC00476Q8WZB0 136 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 NACC2Q96BF6 587 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 PGBD1Q96JS3 809 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 AIFM3Q96NN9 605 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 MOGAT1Q96PD6 335 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 CGRRF1Q99675 332 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 DUSP26Q9BV47 211 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 TPSD1Q9BZJ3 242 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 TINAGL1Q9GZM7 467 aaPredicted RBP2.72□□□□□ -1.97
HMGB1-208ENST00000490788 CDH19Q9H159 772 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 RSAD1Q9HA92 442 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 PIH1D1Q9NWS0 290 aaKnown RBP2.72□□□□□ -1.97
HMGB1-208ENST00000490788 GOLGA6AQ9NYA3 693 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 CPA4Q9UI42 421 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 TLK1Q9UKI8 766 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 NOB1Q9ULX3 412 aaKnown RBP2.72□□□□□ -1.97
HMGB1-208ENST00000490788 PCDHA6Q9UN73 950 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 INSL6Q9Y581 213 aa2.72□□□□□ -1.97
HMGB1-208ENST00000490788 UTP18Q9Y5J1 556 aaKnown RBP eCLIP2.72□□□□□ -1.97
HMGB1-208ENST00000490788 EPN1Q9Y6I3 576 aaPredicted RBP2.72□□□□□ -1.97
HMGB1-208ENST00000490788 ZNF142P52746 1687 aaPredicted RBP2.72□□□□□ -1.97
HMGB1-208ENST00000490788 SCAF11Q99590 1463 aaKnown RBP2.71□□□□□ -1.97
HMGB1-208ENST00000490788 NEURL4Q96JN8 1562 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 A0A1W2PPL8 197 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 CCDC78A2IDD5 438 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 H3BML4 177 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 KIAA0355O15063 1070 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 SUN1O94901 812 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 KIF20AO95235 890 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 ALDH2P05091 517 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 CHRM2P08172 466 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 HSPA1AP0DMV8 641 aaKnown RBP2.71□□□□□ -1.98
HMGB1-208ENST00000490788 HSPA1BP0DMV9 641 aaKnown RBP2.71□□□□□ -1.98
HMGB1-208ENST00000490788 SRGNP10124 158 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 KRT4P19013 534 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 CHRM3P20309 590 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 HTR1BP28222 390 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 CD6P30203 668 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 FOLR3P41439 243 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 NDUFV1P49821 464 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 SOX8P57073 446 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 NXPH1P58417 271 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 KRTAP10-7P60409 375 aaPredicted RBP2.71□□□□□ -1.98
HMGB1-208ENST00000490788 MC2RQ01718 297 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 EXOSC9Q06265 439 aaKnown RBP2.71□□□□□ -1.98
HMGB1-208ENST00000490788 NBPF8Q3BBV2 869 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 FAM153CQ494X1 144 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 ARHGAP29Q52LW3 1261 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 SLC44A4Q53GD3 710 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 FAM160B1Q5W0V3 765 aa2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms