RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 MRPL45Q9BRJ2 306 aaKnown RBP10.99□□□□□ -0.65
SKA1-204ENST00000488454 BCO2Q9BYV7 579 aa10.99□□□□□ -0.65
SKA1-204ENST00000488454 FAM124BQ9H5Z6 455 aaPredicted RBP10.99□□□□□ -0.65
SKA1-204ENST00000488454 RXFP1Q9HBX9 757 aa10.99□□□□□ -0.65
SKA1-204ENST00000488454 CISHQ9NSE2 258 aa10.99□□□□□ -0.65
SKA1-204ENST00000488454 MTRRQ9UBK8 725 aa10.99□□□□□ -0.65
SKA1-204ENST00000488454 APEX2Q9UBZ4 518 aa10.99□□□□□ -0.65
SKA1-204ENST00000488454 FBXL5Q9UKA1 691 aa10.99□□□□□ -0.65
SKA1-204ENST00000488454 BARX2Q9UMQ3 279 aaPredicted RBP10.99□□□□□ -0.65
SKA1-204ENST00000488454 IRAK3Q9Y616 596 aa10.99□□□□□ -0.65
SKA1-204ENST00000488454 LAMA3Q16787 3333 aa10.98□□□□□ -0.65
SKA1-204ENST00000488454 A0A1W2PQC6 194 aa10.98□□□□□ -0.65
SKA1-204ENST00000488454 FSD2A1L4K1 749 aa10.98□□□□□ -0.65
SKA1-204ENST00000488454 HIDE1A8MVS5 230 aa10.98□□□□□ -0.65
SKA1-204ENST00000488454 GABRDO14764 452 aa10.98□□□□□ -0.65
SKA1-204ENST00000488454 TEX33O43247 280 aa10.98□□□□□ -0.65
SKA1-204ENST00000488454 LILRB3O75022 631 aa10.98□□□□□ -0.65
SKA1-204ENST00000488454 CNPP09543 421 aaKnown RBP10.98□□□□□ -0.65
SKA1-204ENST00000488454 CPB1P15086 417 aa10.98□□□□□ -0.65
SKA1-204ENST00000488454 RPL17P18621 184 aaKnown RBP10.98□□□□□ -0.65
SKA1-204ENST00000488454 RFX1P22670 979 aa10.98□□□□□ -0.65
SKA1-204ENST00000488454 ELF1P32519 619 aa10.98□□□□□ -0.65
SKA1-204ENST00000488454 OR1D2P34982 312 aa10.98□□□□□ -0.65
SKA1-204ENST00000488454 NDUFV1P49821 464 aa10.98□□□□□ -0.65
SKA1-204ENST00000488454 NDST1P52848 882 aa10.98□□□□□ -0.65
SKA1-204ENST00000488454 MAPRE1Q15691 268 aaKnown RBP10.98□□□□□ -0.65
SKA1-204ENST00000488454 ARHGAP44Q17R89 818 aa10.98□□□□□ -0.65
SKA1-204ENST00000488454 KLHDC7AQ5VTJ3 777 aa10.98□□□□□ -0.65
SKA1-204ENST00000488454 ELMSAN1Q6PJG2 1045 aa10.98□□□□□ -0.65
SKA1-204ENST00000488454 BRICD5Q6PL45 260 aa10.98□□□□□ -0.65
SKA1-204ENST00000488454 RNF19BQ6ZMZ0 732 aa10.98□□□□□ -0.65
SKA1-204ENST00000488454 Q7L0L9 218 aa10.98□□□□□ -0.65
SKA1-204ENST00000488454 LIMS2Q7Z4I7 341 aa10.98□□□□□ -0.65
SKA1-204ENST00000488454 RBM23Q86U06 439 aaKnown RBP10.98□□□□□ -0.65
SKA1-204ENST00000488454 UNC93AQ86WB7 457 aa10.98□□□□□ -0.65
SKA1-204ENST00000488454 GLYCTKQ8IVS8 523 aa10.98□□□□□ -0.65
SKA1-204ENST00000488454 ARHGEF19Q8IW93 802 aa10.98□□□□□ -0.65
SKA1-204ENST00000488454 KBTBD7Q8WVZ9 684 aa10.98□□□□□ -0.65
SKA1-204ENST00000488454 KLHL5Q96PQ7 755 aa10.98□□□□□ -0.65
SKA1-204ENST00000488454 CDCA3Q99618 268 aaPredicted RBP10.98□□□□□ -0.65
SKA1-204ENST00000488454 CDX2Q99626 313 aaPredicted RBP10.98□□□□□ -0.65
SKA1-204ENST00000488454 CLSTN3Q9BQT9 956 aa10.98□□□□□ -0.65
SKA1-204ENST00000488454 NT5C1AQ9BXI3 368 aa10.98□□□□□ -0.65
SKA1-204ENST00000488454 TRIM5Q9C035 493 aa10.98□□□□□ -0.65
SKA1-204ENST00000488454 XPO4Q9C0E2 1151 aaKnown RBP10.98□□□□□ -0.65
SKA1-204ENST00000488454 NSUN3Q9H649 340 aaKnown RBP10.98□□□□□ -0.65
SKA1-204ENST00000488454 PLCB1Q9NQ66 1216 aa10.98□□□□□ -0.65
SKA1-204ENST00000488454 FAM207AQ9NSI2 230 aaPredicted RBP10.98□□□□□ -0.65
SKA1-204ENST00000488454 DPP7Q9UHL4 492 aa10.98□□□□□ -0.65
SKA1-204ENST00000488454 DNAJC12Q9UKB3 198 aa10.98□□□□□ -0.65
SKA1-204ENST00000488454 CDH9Q9ULB4 789 aa10.98□□□□□ -0.65
SKA1-204ENST00000488454 STXBP5LQ9Y2K9 1186 aa10.98□□□□□ -0.65
SKA1-204ENST00000488454 DAAM1Q9Y4D1 1078 aa10.98□□□□□ -0.65
SKA1-204ENST00000488454 PCDHB4Q9Y5E5 795 aa10.98□□□□□ -0.65
SKA1-204ENST00000488454 CDY1Q9Y6F8 540 aa10.98□□□□□ -0.65
SKA1-204ENST00000488454 ANK1P16157 1881 aa10.98□□□□□ -0.65
SKA1-204ENST00000488454 RNF223E7ERA6 249 aa10.97□□□□□ -0.65
SKA1-204ENST00000488454 PER2O15055 1255 aa10.97□□□□□ -0.65
SKA1-204ENST00000488454 TEX28O15482 410 aa10.97□□□□□ -0.65
SKA1-204ENST00000488454 KRT5P13647 590 aa10.97□□□□□ -0.65
SKA1-204ENST00000488454 UCHL3P15374 230 aa10.97□□□□□ -0.65
SKA1-204ENST00000488454 PTPN1P18031 435 aaKnown RBP10.97□□□□□ -0.65
SKA1-204ENST00000488454 POU3F3P20264 500 aaPredicted RBP10.97□□□□□ -0.65
SKA1-204ENST00000488454 ACAT1P24752 427 aaKnown RBP10.97□□□□□ -0.65
SKA1-204ENST00000488454 LMO2P25791 158 aa10.97□□□□□ -0.65
SKA1-204ENST00000488454 USP8P40818 1118 aa10.97□□□□□ -0.65
SKA1-204ENST00000488454 NRIP1P48552 1158 aa10.97□□□□□ -0.65
SKA1-204ENST00000488454 SMARCB1Q12824 385 aa10.97□□□□□ -0.65
SKA1-204ENST00000488454 RAPGEF1Q13905 1077 aa10.97□□□□□ -0.65
SKA1-204ENST00000488454 RAB33AQ14088 237 aa10.97□□□□□ -0.65
SKA1-204ENST00000488454 NFE2Q16621 373 aaPredicted RBP10.97□□□□□ -0.65
SKA1-204ENST00000488454 ZNF394Q53GI3 561 aa10.97□□□□□ -0.65
SKA1-204ENST00000488454 SLC8B1Q6J4K2 584 aa10.97□□□□□ -0.65
SKA1-204ENST00000488454 SARM1Q6SZW1 724 aa10.97□□□□□ -0.65
SKA1-204ENST00000488454 CACNA2D4Q7Z3S7 1137 aa10.97□□□□□ -0.65
SKA1-204ENST00000488454 PALB2Q86YC2 1186 aa10.97□□□□□ -0.65
SKA1-204ENST00000488454 MICALL1Q8N3F8 863 aa10.97□□□□□ -0.65
SKA1-204ENST00000488454 HEXIM2Q96MH2 286 aaKnown RBP10.97□□□□□ -0.65
SKA1-204ENST00000488454 SYT15Q9BQS2 421 aa10.97□□□□□ -0.65
SKA1-204ENST00000488454 NUP58Q9BVL2 599 aa10.97□□□□□ -0.65
SKA1-204ENST00000488454 SLC6A16Q9GZN6 736 aa10.97□□□□□ -0.65
SKA1-204ENST00000488454 SDCBP2Q9H190 292 aa10.97□□□□□ -0.65
SKA1-204ENST00000488454 IGFLR1Q9H665 355 aa10.97□□□□□ -0.65
SKA1-204ENST00000488454 SIK3Q9Y2K2 1263 aa10.97□□□□□ -0.65
SKA1-204ENST00000488454 PCDHGC5Q9Y5F6 944 aa10.97□□□□□ -0.65
SKA1-204ENST00000488454 MTCH2Q9Y6C9 303 aa10.97□□□□□ -0.65
SKA1-204ENST00000488454 GBF1Q92538 1859 aa10.97□□□□□ -0.65
SKA1-204ENST00000488454 PDCD11Q14690 1871 aaKnown RBP10.96□□□□□ -0.65
SKA1-204ENST00000488454 GOLGA6L3A6NEY3 463 aa10.96□□□□□ -0.65
SKA1-204ENST00000488454 NCK2O43639 380 aa10.96□□□□□ -0.65
SKA1-204ENST00000488454 TBC1D4O60343 1298 aa10.96□□□□□ -0.65
SKA1-204ENST00000488454 CLASP2O75122 1294 aaKnown RBP10.96□□□□□ -0.65
SKA1-204ENST00000488454 CILPO75339 1184 aa10.96□□□□□ -0.65
SKA1-204ENST00000488454 GLUD1P00367 558 aa10.96□□□□□ -0.65
SKA1-204ENST00000488454 C1RP00736 705 aa10.96□□□□□ -0.65
SKA1-204ENST00000488454 TPM1P09493 284 aa10.96□□□□□ -0.65
SKA1-204ENST00000488454 SRGAP2BP0DMP2 458 aa10.96□□□□□ -0.65
SKA1-204ENST00000488454 FOSL2P15408 326 aa10.96□□□□□ -0.65
SKA1-204ENST00000488454 KLK7P49862 253 aa10.96□□□□□ -0.65
SKA1-204ENST00000488454 POLR2FP61218 127 aaKnown RBP10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms