RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 MYADMQ96S97 322 aa15.78■□□□□ 0.12
USP4-212ENST00000486549 SRRTQ9BXP5 876 aaKnown RBP15.78■□□□□ 0.12
USP4-212ENST00000486549 SDCBP2Q9H190 292 aa15.78■□□□□ 0.12
USP4-212ENST00000486549 METTL14Q9HCE5 456 aaKnown RBP15.78■□□□□ 0.12
USP4-212ENST00000486549 CEP72Q9P209 647 aa15.78■□□□□ 0.12
USP4-212ENST00000486549 RWDD2AQ9UIY3 292 aa15.78■□□□□ 0.12
USP4-212ENST00000486549 CDH9Q9ULB4 789 aa15.78■□□□□ 0.12
USP4-212ENST00000486549 NME7Q9Y5B8 376 aa15.78■□□□□ 0.12
USP4-212ENST00000486549 MYBPHLA2RUH7 354 aa15.77■□□□□ 0.12
USP4-212ENST00000486549 A8MXQ7 604 aa15.77■□□□□ 0.12
USP4-212ENST00000486549 LRRN2O75325 713 aa15.77■□□□□ 0.12
USP4-212ENST00000486549 RHOP08100 348 aa15.77■□□□□ 0.12
USP4-212ENST00000486549 EPHB3P54753 998 aa15.77■□□□□ 0.12
USP4-212ENST00000486549 NLRP12P59046 1061 aa15.77■□□□□ 0.12
USP4-212ENST00000486549 NOP14P78316 857 aaKnown RBP15.77■□□□□ 0.12
USP4-212ENST00000486549 ZXDAP98168 799 aa15.77■□□□□ 0.12
USP4-212ENST00000486549 SMARCB1Q12824 385 aa15.77■□□□□ 0.12
USP4-212ENST00000486549 PTPN21Q16825 1174 aa15.77■□□□□ 0.12
USP4-212ENST00000486549 CBWD6Q4V339 395 aa15.77■□□□□ 0.12
USP4-212ENST00000486549 CBWD3Q5JTY5 395 aa15.77■□□□□ 0.12
USP4-212ENST00000486549 CBWD5Q5RIA9 395 aa15.77■□□□□ 0.12
USP4-212ENST00000486549 FOXR2Q6PJQ5 311 aa15.77■□□□□ 0.12
USP4-212ENST00000486549 TRIM67Q6ZTA4 783 aa15.77■□□□□ 0.12
USP4-212ENST00000486549 BMP8AQ7Z5Y6 402 aa15.77■□□□□ 0.12
USP4-212ENST00000486549 FRMD5Q7Z6J6 570 aa15.77■□□□□ 0.12
USP4-212ENST00000486549 SPATA2LQ8IUW3 424 aaPredicted RBP15.77■□□□□ 0.12
USP4-212ENST00000486549 UBALD2Q8IYN6 164 aa15.77■□□□□ 0.12
USP4-212ENST00000486549 HS6ST3Q8IZP7 471 aa15.77■□□□□ 0.12
USP4-212ENST00000486549 FBXL13Q8NEE6 735 aa15.77■□□□□ 0.12
USP4-212ENST00000486549 ITFG1Q8TB96 612 aa15.77■□□□□ 0.12
USP4-212ENST00000486549 SEMA4DQ92854 862 aa15.77■□□□□ 0.12
USP4-212ENST00000486549 SLC35C1Q96A29 364 aa15.77■□□□□ 0.12
USP4-212ENST00000486549 MYLPFQ96A32 169 aa15.77■□□□□ 0.12
USP4-212ENST00000486549 PKMYT1Q99640 499 aa15.77■□□□□ 0.12
USP4-212ENST00000486549 LPIN3Q9BQK8 851 aa15.77■□□□□ 0.12
USP4-212ENST00000486549 DNAJC25Q9H1X3 360 aa15.77■□□□□ 0.12
USP4-212ENST00000486549 DPEP3Q9H4B8 488 aa15.77■□□□□ 0.12
USP4-212ENST00000486549 CRTAC1Q9NQ79 661 aa15.77■□□□□ 0.12
USP4-212ENST00000486549 LIMD1Q9UGP4 676 aa15.77■□□□□ 0.12
USP4-212ENST00000486549 MRPS23Q9Y3D9 190 aaKnown RBP15.77■□□□□ 0.12
USP4-212ENST00000486549 FGFR1OPO95684 399 aaKnown RBP15.76■□□□□ 0.11
USP4-212ENST00000486549 ASGR2P07307 311 aa15.76■□□□□ 0.11
USP4-212ENST00000486549 HAPLN1P10915 354 aaPredicted RBP15.76■□□□□ 0.11
USP4-212ENST00000486549 MYL4P12829 197 aa15.76■□□□□ 0.11
USP4-212ENST00000486549 ATF6P18850 670 aa15.76■□□□□ 0.11
USP4-212ENST00000486549 CYP2F1P24903 491 aa15.76■□□□□ 0.11
USP4-212ENST00000486549 ASPAP45381 313 aa15.76■□□□□ 0.11
USP4-212ENST00000486549 TUFMP49411 452 aaKnown RBP15.76■□□□□ 0.11
USP4-212ENST00000486549 MCCD1P59942 119 aaPredicted RBP15.76■□□□□ 0.11
USP4-212ENST00000486549 CYP27A1Q02318 531 aa15.76■□□□□ 0.11
USP4-212ENST00000486549 SIGLEC14Q08ET2 396 aa15.76■□□□□ 0.11
USP4-212ENST00000486549 TPD52L1Q16890 204 aaPredicted RBP15.76■□□□□ 0.11
USP4-212ENST00000486549 SLC5A9Q2M3M2 681 aa15.76■□□□□ 0.11
USP4-212ENST00000486549 MDH1BQ5I0G3 518 aa15.76■□□□□ 0.11
USP4-212ENST00000486549 PDZD4Q76G19 769 aaPredicted RBP15.76■□□□□ 0.11
USP4-212ENST00000486549 CREBRFQ8IUR6 639 aa15.76■□□□□ 0.11
USP4-212ENST00000486549 ZDHHC14Q8IZN3 488 aa15.76■□□□□ 0.11
USP4-212ENST00000486549 ST13P5Q8NFI4 369 aaPredicted RBP15.76■□□□□ 0.11
USP4-212ENST00000486549 GPR152Q8TDT2 470 aa15.76■□□□□ 0.11
USP4-212ENST00000486549 GIPC2Q8TF65 315 aa15.76■□□□□ 0.11
USP4-212ENST00000486549 PRRX2Q99811 253 aa15.76■□□□□ 0.11
USP4-212ENST00000486549 APOBEC3GQ9HC16 384 aaKnown RBP15.76■□□□□ 0.11
USP4-212ENST00000486549 ASAH2Q9NR71 780 aa15.76■□□□□ 0.11
USP4-212ENST00000486549 HSFX1Q9UBD0 423 aa15.76■□□□□ 0.11
USP4-212ENST00000486549 DACH1Q9UI36 760 aa15.76■□□□□ 0.11
USP4-212ENST00000486549 PTPRDP23468 1912 aa15.76■□□□□ 0.11
USP4-212ENST00000486549 MYO10Q9HD67 2058 aa15.75■□□□□ 0.11
USP4-212ENST00000486549 GNA14O95837 355 aa15.75■□□□□ 0.11
USP4-212ENST00000486549 FAM163BP0C2L3 166 aa15.75■□□□□ 0.11
USP4-212ENST00000486549 CEBPBP17676 345 aa15.75■□□□□ 0.11
USP4-212ENST00000486549 PLA2G5P39877 138 aa15.75■□□□□ 0.11
USP4-212ENST00000486549 GPR15P49685 360 aa15.75■□□□□ 0.11
USP4-212ENST00000486549 ORC1Q13415 861 aa15.75■□□□□ 0.11
USP4-212ENST00000486549 MTMR3Q13615 1198 aa15.75■□□□□ 0.11
USP4-212ENST00000486549 VEPH1Q14D04 833 aa15.75■□□□□ 0.11
USP4-212ENST00000486549 TAF12Q16514 161 aa15.75■□□□□ 0.11
USP4-212ENST00000486549 WDR44Q5JSH3 913 aa15.75■□□□□ 0.11
USP4-212ENST00000486549 CYP4A22Q5TCH4 519 aa15.75■□□□□ 0.11
USP4-212ENST00000486549 SDHAF4Q5VUM1 108 aa15.75■□□□□ 0.11
USP4-212ENST00000486549 FAM171BQ6P995 826 aa15.75■□□□□ 0.11
USP4-212ENST00000486549 C4orf50Q6ZRC1 276 aa15.75■□□□□ 0.11
USP4-212ENST00000486549 SCN4BQ8IWT1 228 aa15.75■□□□□ 0.11
USP4-212ENST00000486549 SUGP1Q8IWZ8 645 aaKnown RBP15.75■□□□□ 0.11
USP4-212ENST00000486549 STKLD1Q8NE28 680 aa15.75■□□□□ 0.11
USP4-212ENST00000486549 TCEAL4Q96EI5 215 aa15.75■□□□□ 0.11
USP4-212ENST00000486549 MED15Q96RN5 788 aa15.75■□□□□ 0.11
USP4-212ENST00000486549 NIF3L1Q9GZT8 377 aa15.75■□□□□ 0.11
USP4-212ENST00000486549 RAB20Q9NX57 234 aa15.75■□□□□ 0.11
USP4-212ENST00000486549 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.75■□□□□ 0.11
USP4-212ENST00000486549 MAGEC2Q9UBF1 373 aaPredicted RBP15.75■□□□□ 0.11
USP4-212ENST00000486549 HMGXB4Q9UGU5 601 aa15.75■□□□□ 0.11
USP4-212ENST00000486549 SORCS3Q9UPU3 1222 aa15.75■□□□□ 0.11
USP4-212ENST00000486549 TMEM221A6NGB7 291 aa15.74■□□□□ 0.11
USP4-212ENST00000486549 M0R296 226 aa15.74■□□□□ 0.11
USP4-212ENST00000486549 CCDC192P0DO97 292 aa15.74■□□□□ 0.11
USP4-212ENST00000486549 LAMP2P13473 410 aa15.74■□□□□ 0.11
USP4-212ENST00000486549 GJA1P17302 382 aa15.74■□□□□ 0.11
USP4-212ENST00000486549 PTPN1P18031 435 aaKnown RBP15.74■□□□□ 0.11
USP4-212ENST00000486549 CD58P19256 250 aa15.74■□□□□ 0.11
USP4-212ENST00000486549 CCR2P41597 374 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms