RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 SNX21Q969T3 373 aa23.17■■□□□ 1.3
USP40-215ENST00000484528 SLC46A2Q9BY10 475 aa23.17■■□□□ 1.3
USP40-215ENST00000484528 LRRC27Q9C0I9 530 aa23.17■■□□□ 1.3
USP40-215ENST00000484528 INTS13Q9NVM9 706 aa23.17■■□□□ 1.3
USP40-215ENST00000484528 HSPBP1Q9NZL4 362 aa23.17■■□□□ 1.3
USP40-215ENST00000484528 MAGED2Q9UNF1 606 aaPredicted RBP23.17■■□□□ 1.3
USP40-215ENST00000484528 ATG2BQ96BY7 2078 aa23.17■■□□□ 1.3
USP40-215ENST00000484528 HMGA1P17096 107 aaKnown RBP23.16■■□□□ 1.3
USP40-215ENST00000484528 MYL7Q01449 175 aa23.16■■□□□ 1.3
USP40-215ENST00000484528 TNK2Q07912 1038 aa23.16■■□□□ 1.3
USP40-215ENST00000484528 NFE2Q16621 373 aaPredicted RBP23.16■■□□□ 1.3
USP40-215ENST00000484528 ARHGAP29Q52LW3 1261 aa23.16■■□□□ 1.3
USP40-215ENST00000484528 INTS6LQ5JSJ4 861 aaKnown RBP23.16■■□□□ 1.3
USP40-215ENST00000484528 FAM26FQ5R3K3 315 aa23.16■■□□□ 1.3
USP40-215ENST00000484528 TXNDC11Q6PKC3 985 aa23.16■■□□□ 1.3
USP40-215ENST00000484528 TMEM150AQ86TG1 271 aa23.16■■□□□ 1.3
USP40-215ENST00000484528 HSCBQ8IWL3 235 aa23.16■■□□□ 1.3
USP40-215ENST00000484528 ADGRF2Q8IZF7 708 aa23.16■■□□□ 1.3
USP40-215ENST00000484528 IQUBQ8NA54 791 aa23.16■■□□□ 1.3
USP40-215ENST00000484528 BPIFB1Q8TDL5 484 aa23.16■■□□□ 1.3
USP40-215ENST00000484528 RUBCNQ92622 972 aa23.16■■□□□ 1.3
USP40-215ENST00000484528 ANKRD36BP1Q96IX9 119 aa23.16■■□□□ 1.3
USP40-215ENST00000484528 CUEDC2Q9H467 287 aa23.16■■□□□ 1.3
USP40-215ENST00000484528 RBM12Q9NTZ6 932 aaKnown RBP23.16■■□□□ 1.3
USP40-215ENST00000484528 ZSCAN32Q9NX65 697 aa23.16■■□□□ 1.3
USP40-215ENST00000484528 PCDHGA2Q9Y5H1 932 aa23.16■■□□□ 1.3
USP40-215ENST00000484528 GREB1Q4ZG55 1949 aa23.16■■□□□ 1.3
USP40-215ENST00000484528 ANAPC1Q9H1A4 1944 aa23.16■■□□□ 1.3
USP40-215ENST00000484528 ZNF233A6NK53 670 aa23.15■■□□□ 1.3
USP40-215ENST00000484528 SPECC1L-ADORA2AF8WAN1 911 aa23.15■■□□□ 1.3
USP40-215ENST00000484528 HSP90AA1P07900 732 aaKnown RBP23.15■■□□□ 1.3
USP40-215ENST00000484528 CHRNB1P11230 501 aa23.15■■□□□ 1.3
USP40-215ENST00000484528 CYP2F1P24903 491 aa23.15■■□□□ 1.3
USP40-215ENST00000484528 NLRP12P59046 1061 aa23.15■■□□□ 1.3
USP40-215ENST00000484528 DDR2Q16832 855 aa23.15■■□□□ 1.3
USP40-215ENST00000484528 NELFCDQ8IXH7 590 aa23.15■■□□□ 1.3
USP40-215ENST00000484528 TMEM86AQ8N2M4 240 aa23.15■■□□□ 1.3
USP40-215ENST00000484528 MAB21L3Q8N8X9 362 aa23.15■■□□□ 1.3
USP40-215ENST00000484528 ZBTB44Q8NCP5 570 aa23.15■■□□□ 1.3
USP40-215ENST00000484528 ACBD6Q9BR61 282 aa23.15■■□□□ 1.3
USP40-215ENST00000484528 BLZF1Q9H2G9 400 aa23.15■■□□□ 1.3
USP40-215ENST00000484528 GDAP2Q9NXN4 497 aa23.15■■□□□ 1.3
USP40-215ENST00000484528 OBP2AQ9NY56 170 aa23.15■■□□□ 1.3
USP40-215ENST00000484528 GTF3C4Q9UKN8 822 aa23.15■■□□□ 1.3
USP40-215ENST00000484528 R3HCC1Q9Y3T6 440 aaKnown RBP23.15■■□□□ 1.3
USP40-215ENST00000484528 PTPRDP23468 1912 aa23.15■■□□□ 1.3
USP40-215ENST00000484528 DCHS1Q96JQ0 3298 aa23.14■■□□□ 1.3
USP40-215ENST00000484528 KIAA0391O15091 583 aaKnown RBP23.14■■□□□ 1.29
USP40-215ENST00000484528 POLR2DO15514 142 aaKnown RBP23.14■■□□□ 1.29
USP40-215ENST00000484528 F13A1P00488 732 aa23.14■■□□□ 1.29
USP40-215ENST00000484528 TNNC2P02585 160 aa23.14■■□□□ 1.29
USP40-215ENST00000484528 ZSCAN22P10073 491 aaPredicted RBP23.14■■□□□ 1.29
USP40-215ENST00000484528 CTHP32929 405 aa23.14■■□□□ 1.29
USP40-215ENST00000484528 ID4P47928 161 aa23.14■■□□□ 1.29
USP40-215ENST00000484528 AMPD3Q01432 767 aa23.14■■□□□ 1.29
USP40-215ENST00000484528 GAS6Q14393 721 aa23.14■■□□□ 1.29
USP40-215ENST00000484528 SOWAHAQ2M3V2 549 aa23.14■■□□□ 1.29
USP40-215ENST00000484528 WDR44Q5JSH3 913 aa23.14■■□□□ 1.29
USP40-215ENST00000484528 EPM2AIP1Q7L775 607 aaPredicted RBP23.14■■□□□ 1.29
USP40-215ENST00000484528 CMTM8Q8IZV2 173 aa23.14■■□□□ 1.29
USP40-215ENST00000484528 RDH13Q8NBN7 331 aa23.14■■□□□ 1.29
USP40-215ENST00000484528 SPRYD3Q8NCJ5 442 aa23.14■■□□□ 1.29
USP40-215ENST00000484528 LEO1Q8WVC0 666 aaPredicted RBP23.14■■□□□ 1.29
USP40-215ENST00000484528 NELL1Q92832 810 aa23.14■■□□□ 1.29
USP40-215ENST00000484528 PKMYT1Q99640 499 aa23.14■■□□□ 1.29
USP40-215ENST00000484528 C8orf33Q9H7E9 229 aaPredicted RBP23.14■■□□□ 1.29
USP40-215ENST00000484528 CCL26Q9Y258 94 aa23.14■■□□□ 1.29
USP40-215ENST00000484528 CACNA1AO00555 2505 aa23.14■■□□□ 1.29
USP40-215ENST00000484528 CLIC2O15247 247 aa23.13■■□□□ 1.29
USP40-215ENST00000484528 EIF3DO15371 548 aaKnown RBP eCLIP23.13■■□□□ 1.29
USP40-215ENST00000484528 F11P03951 625 aa23.13■■□□□ 1.29
USP40-215ENST00000484528 CYP2J2P51589 502 aa23.13■■□□□ 1.29
USP40-215ENST00000484528 SATB1Q01826 763 aa23.13■■□□□ 1.29
USP40-215ENST00000484528 PKP1Q13835 747 aa23.13■■□□□ 1.29
USP40-215ENST00000484528 PON2Q15165 354 aa23.13■■□□□ 1.29
USP40-215ENST00000484528 TXNDC8Q6A555 127 aa23.13■■□□□ 1.29
USP40-215ENST00000484528 Q6ZS52 159 aa23.13■■□□□ 1.29
USP40-215ENST00000484528 TOP6BLQ8N6T0 577 aa23.13■■□□□ 1.29
USP40-215ENST00000484528 MSANTD3Q96H12 275 aa23.13■■□□□ 1.29
USP40-215ENST00000484528 HPDLQ96IR7 371 aa23.13■■□□□ 1.29
USP40-215ENST00000484528 NCDNQ9UBB6 729 aa23.13■■□□□ 1.29
USP40-215ENST00000484528 MYBPHLA2RUH7 354 aa23.12■■□□□ 1.29
USP40-215ENST00000484528 TGFB1I1O43294 461 aa23.12■■□□□ 1.29
USP40-215ENST00000484528 ATP2C2O75185 946 aa23.12■■□□□ 1.29
USP40-215ENST00000484528 CSH1P0DML2 217 aa23.12■■□□□ 1.29
USP40-215ENST00000484528 CSH2P0DML3 217 aa23.12■■□□□ 1.29
USP40-215ENST00000484528 TDGF1P13385 188 aa23.12■■□□□ 1.29
USP40-215ENST00000484528 WEE1P30291 646 aa23.12■■□□□ 1.29
USP40-215ENST00000484528 AVPR1AP37288 418 aa23.12■■□□□ 1.29
USP40-215ENST00000484528 ME1P48163 572 aa23.12■■□□□ 1.29
USP40-215ENST00000484528 MLLT6P55198 1093 aaPredicted RBP23.12■■□□□ 1.29
USP40-215ENST00000484528 PSMC1P62191 440 aaKnown RBP23.12■■□□□ 1.29
USP40-215ENST00000484528 RPL10AP62906 217 aaKnown RBP23.12■■□□□ 1.29
USP40-215ENST00000484528 MYO1EQ12965 1108 aa23.12■■□□□ 1.29
USP40-215ENST00000484528 SPATA2LQ8IUW3 424 aaPredicted RBP23.12■■□□□ 1.29
USP40-215ENST00000484528 CELF5Q8N6W0 485 aaKnown RBP23.12■■□□□ 1.29
USP40-215ENST00000484528 ZNF507Q8TCN5 953 aa23.12■■□□□ 1.29
USP40-215ENST00000484528 C7orf25Q9BPX7 421 aa23.12■■□□□ 1.29
USP40-215ENST00000484528 AGPAT3Q9NRZ7 376 aa23.12■■□□□ 1.29
USP40-215ENST00000484528 PCDHA7Q9UN72 937 aa23.12■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms