RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 RHCEP18577 417 aa7.4□□□□□ -1.22
USP40-213ENST00000483216 SLC11A2P49281 568 aa7.4□□□□□ -1.22
USP40-213ENST00000483216 UCP3P55916 312 aa7.4□□□□□ -1.22
USP40-213ENST00000483216 RHDQ02161 417 aa7.4□□□□□ -1.22
USP40-213ENST00000483216 KIAA0753Q2KHM9 967 aa7.4□□□□□ -1.22
USP40-213ENST00000483216 FAM109AQ8N4B1 249 aa7.4□□□□□ -1.22
USP40-213ENST00000483216 PGBD1Q96JS3 809 aa7.4□□□□□ -1.22
USP40-213ENST00000483216 NELL2Q99435 816 aa7.4□□□□□ -1.22
USP40-213ENST00000483216 BHMT2Q9H2M3 363 aa7.4□□□□□ -1.22
USP40-213ENST00000483216 PAXBP1Q9Y5B6 917 aa7.4□□□□□ -1.22
USP40-213ENST00000483216 USP19O94966 1318 aa7.4□□□□□ -1.22
USP40-213ENST00000483216 TTBK1Q5TCY1 1321 aaPredicted RBP7.39□□□□□ -1.23
USP40-213ENST00000483216 A0A087WWL8 130 aa7.39□□□□□ -1.23
USP40-213ENST00000483216 MYO1CO00159 1063 aa7.39□□□□□ -1.23
USP40-213ENST00000483216 TBX3O15119 743 aa7.39□□□□□ -1.23
USP40-213ENST00000483216 YY2O15391 372 aa7.39□□□□□ -1.23
USP40-213ENST00000483216 MPPED1O15442 326 aa7.39□□□□□ -1.23
USP40-213ENST00000483216 HNRNPMP52272 730 aaKnown RBP eCLIP7.39□□□□□ -1.23
USP40-213ENST00000483216 WNT3P56703 355 aa7.39□□□□□ -1.23
USP40-213ENST00000483216 LOXL3P58215 753 aa7.39□□□□□ -1.23
USP40-213ENST00000483216 NXPH1P58417 271 aa7.39□□□□□ -1.23
USP40-213ENST00000483216 ITIH3Q06033 890 aa7.39□□□□□ -1.23
USP40-213ENST00000483216 POLD3Q15054 466 aaPredicted RBP7.39□□□□□ -1.23
USP40-213ENST00000483216 PTPRRQ15256 657 aa7.39□□□□□ -1.23
USP40-213ENST00000483216 RBM20Q5T481 1227 aaKnown RBP7.39□□□□□ -1.23
USP40-213ENST00000483216 SFRP4Q6FHJ7 346 aaPredicted RBP7.39□□□□□ -1.23
USP40-213ENST00000483216 B3GALNT2Q8NCR0 500 aa7.39□□□□□ -1.23
USP40-213ENST00000483216 TTC17Q96AE7 1141 aa7.39□□□□□ -1.23
USP40-213ENST00000483216 APIPQ96GX9 242 aa7.39□□□□□ -1.23
USP40-213ENST00000483216 AGAP2Q99490 1192 aa7.39□□□□□ -1.23
USP40-213ENST00000483216 AMBRA1Q9C0C7 1298 aa7.39□□□□□ -1.23
USP40-213ENST00000483216 TTYH3Q9C0H2 523 aa7.39□□□□□ -1.23
USP40-213ENST00000483216 SMURF2Q9HAU4 748 aa7.39□□□□□ -1.23
USP40-213ENST00000483216 GEMIN8Q9NWZ8 242 aaKnown RBP7.39□□□□□ -1.23
USP40-213ENST00000483216 TBC1D4O60343 1298 aa7.38□□□□□ -1.23
USP40-213ENST00000483216 XRCC6P12956 609 aaKnown RBP eCLIP7.38□□□□□ -1.23
USP40-213ENST00000483216 MYF5P13349 255 aa7.38□□□□□ -1.23
USP40-213ENST00000483216 TYRP1P17643 537 aa7.38□□□□□ -1.23
USP40-213ENST00000483216 CD6P30203 668 aa7.38□□□□□ -1.23
USP40-213ENST00000483216 ZNF134P52741 427 aa7.38□□□□□ -1.23
USP40-213ENST00000483216 COL10A1Q03692 680 aa7.38□□□□□ -1.23
USP40-213ENST00000483216 SLC13A2Q13183 592 aa7.38□□□□□ -1.23
USP40-213ENST00000483216 CTBP1Q13363 440 aa7.38□□□□□ -1.23
USP40-213ENST00000483216 NBPF8Q3BBV2 869 aa7.38□□□□□ -1.23
USP40-213ENST00000483216 PPP4R4Q6NUP7 873 aa7.38□□□□□ -1.23
USP40-213ENST00000483216 LAYNQ6UX15 382 aa7.38□□□□□ -1.23
USP40-213ENST00000483216 TMEM108Q6UXF1 575 aa7.38□□□□□ -1.23
USP40-213ENST00000483216 DNAJC5GQ8N7S2 189 aa7.38□□□□□ -1.23
USP40-213ENST00000483216 MYCBPAPQ8TBZ2 947 aa7.38□□□□□ -1.23
USP40-213ENST00000483216 TIFAQ96CG3 184 aa7.38□□□□□ -1.23
USP40-213ENST00000483216 LRRC27Q9C0I9 530 aa7.38□□□□□ -1.23
USP40-213ENST00000483216 DDX21Q9NR30 783 aaKnown RBP eCLIP7.38□□□□□ -1.23
USP40-213ENST00000483216 SALL3Q9BXA9 1300 aa7.37□□□□□ -1.23
USP40-213ENST00000483216 MGEA5O60502 916 aa7.37□□□□□ -1.23
USP40-213ENST00000483216 PXNP49023 591 aaPredicted RBP7.37□□□□□ -1.23
USP40-213ENST00000483216 SUMO3P55854 103 aaPredicted RBP7.37□□□□□ -1.23
USP40-213ENST00000483216 MRPS35P82673 323 aaKnown RBP7.37□□□□□ -1.23
USP40-213ENST00000483216 SEMA5AQ13591 1074 aa7.37□□□□□ -1.23
USP40-213ENST00000483216 RAB32Q13637 225 aa7.37□□□□□ -1.23
USP40-213ENST00000483216 HLTFQ14527 1009 aaKnown RBP eCLIP7.37□□□□□ -1.23
USP40-213ENST00000483216 ZNF169Q14929 603 aaPredicted RBP7.37□□□□□ -1.23
USP40-213ENST00000483216 CNGA2Q16280 664 aa7.37□□□□□ -1.23
USP40-213ENST00000483216 TSHZ1Q6ZSZ6 1077 aa7.37□□□□□ -1.23
USP40-213ENST00000483216 SLC15A4Q8N697 577 aa7.37□□□□□ -1.23
USP40-213ENST00000483216 TOR1AIP2Q8NFQ8 470 aa7.37□□□□□ -1.23
USP40-213ENST00000483216 MAML1Q92585 1016 aa7.37□□□□□ -1.23
USP40-213ENST00000483216 FAM136AQ96C01 138 aa7.37□□□□□ -1.23
USP40-213ENST00000483216 FBXL20Q96IG2 436 aa7.37□□□□□ -1.23
USP40-213ENST00000483216 MESP1Q9BRJ9 268 aa7.37□□□□□ -1.23
USP40-213ENST00000483216 PTDSS2Q9BVG9 487 aa7.37□□□□□ -1.23
USP40-213ENST00000483216 TPSD1Q9BZJ3 242 aa7.37□□□□□ -1.23
USP40-213ENST00000483216 ZNF518BQ9C0D4 1074 aa7.37□□□□□ -1.23
USP40-213ENST00000483216 LRIT1Q9P2V4 623 aa7.37□□□□□ -1.23
USP40-213ENST00000483216 CPNE7Q9UBL6 633 aa7.37□□□□□ -1.23
USP40-213ENST00000483216 SHOC2Q9UQ13 582 aa7.37□□□□□ -1.23
USP40-213ENST00000483216 HMGB1P09429 215 aaKnown RBP7.36□□□□□ -1.23
USP40-213ENST00000483216 PEX2P28328 305 aa7.36□□□□□ -1.23
USP40-213ENST00000483216 LILRA4P59901 499 aa7.36□□□□□ -1.23
USP40-213ENST00000483216 SLC44A4Q53GD3 710 aa7.36□□□□□ -1.23
USP40-213ENST00000483216 HSP90AB2PQ58FF8 381 aa7.36□□□□□ -1.23
USP40-213ENST00000483216 GPR150Q8NGU9 434 aa7.36□□□□□ -1.23
USP40-213ENST00000483216 NMD3Q96D46 503 aaKnown RBP7.36□□□□□ -1.23
USP40-213ENST00000483216 PDLIM2Q96JY6 352 aa7.36□□□□□ -1.23
USP40-213ENST00000483216 KLC4Q9NSK0 619 aa7.36□□□□□ -1.23
USP40-213ENST00000483216 FOXJ2Q9P0K8 574 aa7.36□□□□□ -1.23
USP40-213ENST00000483216 WDR27A2RRH5 827 aa7.35□□□□□ -1.23
USP40-213ENST00000483216 LMNAP02545 664 aaKnown RBP7.35□□□□□ -1.23
USP40-213ENST00000483216 BRAFP15056 766 aa7.35□□□□□ -1.23
USP40-213ENST00000483216 PPIFP30405 207 aaKnown RBP7.35□□□□□ -1.23
USP40-213ENST00000483216 LRPAP1P30533 357 aa7.35□□□□□ -1.23
USP40-213ENST00000483216 SATB1Q01826 763 aa7.35□□□□□ -1.23
USP40-213ENST00000483216 VPS53Q5VIR6 699 aa7.35□□□□□ -1.23
USP40-213ENST00000483216 ICE2Q659A1 982 aa7.35□□□□□ -1.23
USP40-213ENST00000483216 OLFML1Q6UWY5 402 aa7.35□□□□□ -1.23
USP40-213ENST00000483216 GAS2L3Q86XJ1 694 aa7.35□□□□□ -1.23
USP40-213ENST00000483216 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP7.35□□□□□ -1.23
USP40-213ENST00000483216 ACTRT2Q8TDY3 377 aa7.35□□□□□ -1.23
USP40-213ENST00000483216 ACTRT3Q9BYD9 372 aa7.35□□□□□ -1.23
USP40-213ENST00000483216 KIAA1586Q9HCI6 787 aa7.35□□□□□ -1.23
USP40-213ENST00000483216 ALG13Q9NP73 1137 aaKnown RBP7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms