RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 POMGNT1Q8WZA1 660 aa19.71■□□□□ 0.75
CCDC88B-207ENST00000479965 ABTB1Q969K4 478 aaPredicted RBP19.71■□□□□ 0.75
CCDC88B-207ENST00000479965 ZNF395Q9H8N7 513 aaPredicted RBP19.71■□□□□ 0.75
CCDC88B-207ENST00000479965 RAB20Q9NX57 234 aa19.71■□□□□ 0.75
CCDC88B-207ENST00000479965 SLC16A4O15374 487 aa19.7■□□□□ 0.74
CCDC88B-207ENST00000479965 DNAJC6O75061 913 aa19.7■□□□□ 0.74
CCDC88B-207ENST00000479965 GRIA2P42262 883 aa19.7■□□□□ 0.74
CCDC88B-207ENST00000479965 EPHB1P54762 984 aa19.7■□□□□ 0.74
CCDC88B-207ENST00000479965 MORF4L2Q15014 288 aa19.7■□□□□ 0.74
CCDC88B-207ENST00000479965 MSS51Q4VC12 460 aa19.7■□□□□ 0.74
CCDC88B-207ENST00000479965 MFSD7Q6UXD7 560 aa19.7■□□□□ 0.74
CCDC88B-207ENST00000479965 NET1Q7Z628 596 aaPredicted RBP19.7■□□□□ 0.74
CCDC88B-207ENST00000479965 FBXO36Q8NEA4 188 aa19.7■□□□□ 0.74
CCDC88B-207ENST00000479965 HAPLN3Q96S86 360 aa19.7■□□□□ 0.74
CCDC88B-207ENST00000479965 DCAF8L1A6NGE4 600 aa19.7■□□□□ 0.74
CCDC88B-207ENST00000479965 TLR3O15455 904 aaKnown RBP19.7■□□□□ 0.74
CCDC88B-207ENST00000479965 CRABP2P29373 138 aa19.7■□□□□ 0.74
CCDC88B-207ENST00000479965 RAP1GDS1P52306 607 aa19.7■□□□□ 0.74
CCDC88B-207ENST00000479965 SNRNP35Q16560 246 aaKnown RBP19.7■□□□□ 0.74
CCDC88B-207ENST00000479965 JDP2Q8WYK2 163 aa19.7■□□□□ 0.74
CCDC88B-207ENST00000479965 DDX18Q9NVP1 670 aaKnown RBP19.7■□□□□ 0.74
CCDC88B-207ENST00000479965 DENND3A2RUS2 1198 aa19.69■□□□□ 0.74
CCDC88B-207ENST00000479965 ACTR3P61158 418 aa19.69■□□□□ 0.74
CCDC88B-207ENST00000479965 ALCAMQ13740 583 aa19.69■□□□□ 0.74
CCDC88B-207ENST00000479965 FNBP1LQ5T0N5 605 aa19.69■□□□□ 0.74
CCDC88B-207ENST00000479965 ATP11CQ8NB49 1132 aa19.69■□□□□ 0.74
CCDC88B-207ENST00000479965 ACAP3Q96P50 834 aa19.69■□□□□ 0.74
CCDC88B-207ENST00000479965 MIS12Q9H081 205 aa19.69■□□□□ 0.74
CCDC88B-207ENST00000479965 FRMD4AQ9P2Q2 1039 aaPredicted RBP19.69■□□□□ 0.74
CCDC88B-207ENST00000479965 TMCO1Q9UM00 188 aa19.69■□□□□ 0.74
CCDC88B-207ENST00000479965 F8W8V4 182 aa19.69■□□□□ 0.74
CCDC88B-207ENST00000479965 MAGEC1O60732 1142 aa19.69■□□□□ 0.74
CCDC88B-207ENST00000479965 TM7SF2O76062 418 aa19.69■□□□□ 0.74
CCDC88B-207ENST00000479965 HLA-DOAP06340 250 aa19.69■□□□□ 0.74
CCDC88B-207ENST00000479965 TPP2P29144 1249 aaPredicted RBP19.69■□□□□ 0.74
CCDC88B-207ENST00000479965 PRKD1Q15139 912 aaPredicted RBP19.69■□□□□ 0.74
CCDC88B-207ENST00000479965 SFT2D3Q587I9 215 aa19.69■□□□□ 0.74
CCDC88B-207ENST00000479965 RNASEH2BQ5TBB1 312 aaKnown RBP19.69■□□□□ 0.74
CCDC88B-207ENST00000479965 ANKRD22Q5VYY1 191 aa19.69■□□□□ 0.74
CCDC88B-207ENST00000479965 NCSTNQ92542 709 aa19.69■□□□□ 0.74
CCDC88B-207ENST00000479965 USP6NLQ92738 828 aa19.69■□□□□ 0.74
CCDC88B-207ENST00000479965 ZNF577Q9BSK1 485 aa19.69■□□□□ 0.74
CCDC88B-207ENST00000479965 UNC45AQ9H3U1 944 aa19.69■□□□□ 0.74
CCDC88B-207ENST00000479965 TMEM165Q9HC07 324 aa19.69■□□□□ 0.74
CCDC88B-207ENST00000479965 IGLV3-22A0A075B6J6 115 aa19.69■□□□□ 0.74
CCDC88B-207ENST00000479965 PLSCR1O15162 318 aa19.69■□□□□ 0.74
CCDC88B-207ENST00000479965 PSMD10O75832 226 aa19.69■□□□□ 0.74
CCDC88B-207ENST00000479965 CFHP08603 1231 aa19.69■□□□□ 0.74
CCDC88B-207ENST00000479965 CIITAP33076 1130 aa19.69■□□□□ 0.74
CCDC88B-207ENST00000479965 CACNB3P54284 484 aa19.69■□□□□ 0.74
CCDC88B-207ENST00000479965 PEX3P56589 373 aa19.69■□□□□ 0.74
CCDC88B-207ENST00000479965 TMPRSS15P98073 1019 aa19.69■□□□□ 0.74
CCDC88B-207ENST00000479965 GRAPQ13588 217 aa19.69■□□□□ 0.74
CCDC88B-207ENST00000479965 MMEL1Q495T6 779 aa19.69■□□□□ 0.74
CCDC88B-207ENST00000479965 HAUS6Q7Z4H7 955 aa19.69■□□□□ 0.74
CCDC88B-207ENST00000479965 MYLK4Q86YV6 388 aaPredicted RBP19.69■□□□□ 0.74
CCDC88B-207ENST00000479965 ALLCQ8N6M5 410 aa19.69■□□□□ 0.74
CCDC88B-207ENST00000479965 FBXL13Q8NEE6 735 aa19.69■□□□□ 0.74
CCDC88B-207ENST00000479965 GRAPLQ8TC17 118 aaPredicted RBP19.69■□□□□ 0.74
CCDC88B-207ENST00000479965 FAM81BQ96LP2 452 aa19.69■□□□□ 0.74
CCDC88B-207ENST00000479965 GPRC5CQ9NQ84 441 aa19.69■□□□□ 0.74
CCDC88B-207ENST00000479965 RIMBP2O15034 1052 aa19.68■□□□□ 0.74
CCDC88B-207ENST00000479965 PSTPIP1O43586 416 aa19.68■□□□□ 0.74
CCDC88B-207ENST00000479965 UNGP13051 313 aaPredicted RBP19.68■□□□□ 0.74
CCDC88B-207ENST00000479965 HIRAP54198 1017 aaPredicted RBP19.68■□□□□ 0.74
CCDC88B-207ENST00000479965 DLG1Q12959 904 aa19.68■□□□□ 0.74
CCDC88B-207ENST00000479965 R3HDM1Q15032 1099 aaKnown RBP19.68■□□□□ 0.74
CCDC88B-207ENST00000479965 LMBRD2Q68DH5 695 aaPredicted RBP19.68■□□□□ 0.74
CCDC88B-207ENST00000479965 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.68■□□□□ 0.74
CCDC88B-207ENST00000479965 SERAC1Q96JX3 654 aa19.68■□□□□ 0.74
CCDC88B-207ENST00000479965 SHCBP1LQ9BZQ2 653 aa19.68■□□□□ 0.74
CCDC88B-207ENST00000479965 IL1RAPL1Q9NZN1 696 aa19.68■□□□□ 0.74
CCDC88B-207ENST00000479965 TMEM150BA6NC51 233 aa19.68■□□□□ 0.74
CCDC88B-207ENST00000479965 I3L4J1 428 aa19.68■□□□□ 0.74
CCDC88B-207ENST00000479965 AQP4P55087 323 aa19.68■□□□□ 0.74
CCDC88B-207ENST00000479965 PTK7Q13308 1070 aa19.68■□□□□ 0.74
CCDC88B-207ENST00000479965 LIN9Q5TKA1 542 aa19.68■□□□□ 0.74
CCDC88B-207ENST00000479965 ADGRD1Q6QNK2 874 aa19.68■□□□□ 0.74
CCDC88B-207ENST00000479965 EXD1Q8NHP7 514 aa19.68■□□□□ 0.74
CCDC88B-207ENST00000479965 KIFC3Q9BVG8 833 aa19.68■□□□□ 0.74
CCDC88B-207ENST00000479965 DOT1LQ8TEK3 1739 aa19.68■□□□□ 0.74
CCDC88B-207ENST00000479965 ZNF862O60290 1169 aa19.67■□□□□ 0.74
CCDC88B-207ENST00000479965 SERPINB6P35237 376 aa19.67■□□□□ 0.74
CCDC88B-207ENST00000479965 ACBD5Q5T8D3 534 aaPredicted RBP19.67■□□□□ 0.74
CCDC88B-207ENST00000479965 ACAD11Q709F0 780 aa19.67■□□□□ 0.74
CCDC88B-207ENST00000479965 KATNAL2Q8IYT4 538 aa19.67■□□□□ 0.74
CCDC88B-207ENST00000479965 OGFOD1Q8N543 542 aa19.67■□□□□ 0.74
CCDC88B-207ENST00000479965 STK32BQ9NY57 414 aa19.67■□□□□ 0.74
CCDC88B-207ENST00000479965 PRR5-ARHGAP8B1AHC4 643 aa19.67■□□□□ 0.74
CCDC88B-207ENST00000479965 ARP10275 920 aa19.67■□□□□ 0.74
CCDC88B-207ENST00000479965 BPIFB4P59827 614 aa19.67■□□□□ 0.74
CCDC88B-207ENST00000479965 ARHGAP8P85298 464 aa19.67■□□□□ 0.74
CCDC88B-207ENST00000479965 SLC25A3Q00325 362 aa19.67■□□□□ 0.74
CCDC88B-207ENST00000479965 UBAP2LQ14157 1087 aaKnown RBP19.67■□□□□ 0.74
CCDC88B-207ENST00000479965 TTLL12Q14166 644 aaPredicted RBP19.67■□□□□ 0.74
CCDC88B-207ENST00000479965 KLHL38Q2WGJ6 581 aa19.67■□□□□ 0.74
CCDC88B-207ENST00000479965 DDX51Q8N8A6 666 aaKnown RBP eCLIP19.67■□□□□ 0.74
CCDC88B-207ENST00000479965 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP19.67■□□□□ 0.74
CCDC88B-207ENST00000479965 ZSCAN9O15535 394 aaPredicted RBP19.67■□□□□ 0.74
CCDC88B-207ENST00000479965 ASLP04424 464 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms