RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 TAC1P20366 129 aa14.14□□□□□ -0.15
USP42-206ENST00000479544 ASTE1Q2TB18 679 aaPredicted RBP14.14□□□□□ -0.15
USP42-206ENST00000479544 ARSHQ5FYA8 562 aa14.14□□□□□ -0.15
USP42-206ENST00000479544 SV2AQ7L0J3 742 aa14.14□□□□□ -0.15
USP42-206ENST00000479544 IFNEQ86WN2 208 aa14.14□□□□□ -0.15
USP42-206ENST00000479544 MCF2L2Q86YR7 1114 aa14.14□□□□□ -0.15
USP42-206ENST00000479544 TBC1D16Q8TBP0 767 aa14.14□□□□□ -0.15
USP42-206ENST00000479544 CCT7Q99832 543 aa14.14□□□□□ -0.15
USP42-206ENST00000479544 KIAA1586Q9HCI6 787 aa14.14□□□□□ -0.15
USP42-206ENST00000479544 TUFT1Q9NNX1 390 aa14.14□□□□□ -0.15
USP42-206ENST00000479544 R3HDM2Q9Y2K5 976 aaKnown RBP14.14□□□□□ -0.15
USP42-206ENST00000479544 DTNAQ9Y4J8 743 aa14.14□□□□□ -0.15
USP42-206ENST00000479544 AFG3L2Q9Y4W6 797 aa14.14□□□□□ -0.15
USP42-206ENST00000479544 ZC3H4Q9UPT8 1303 aaKnown RBP14.13□□□□□ -0.15
USP42-206ENST00000479544 LCA5LO95447 670 aa14.13□□□□□ -0.15
USP42-206ENST00000479544 SNRPAP09012 282 aaKnown RBP14.13□□□□□ -0.15
USP42-206ENST00000479544 SLC12A3P55017 1021 aa14.13□□□□□ -0.15
USP42-206ENST00000479544 ALCAMQ13740 583 aa14.13□□□□□ -0.15
USP42-206ENST00000479544 ZNF699Q32M78 642 aa14.13□□□□□ -0.15
USP42-206ENST00000479544 CHADLQ6NUI6 762 aa14.13□□□□□ -0.15
USP42-206ENST00000479544 MFN1Q8IWA4 741 aa14.13□□□□□ -0.15
USP42-206ENST00000479544 NLGN1Q8N2Q7 840 aa14.13□□□□□ -0.15
USP42-206ENST00000479544 LRRN4Q8WUT4 740 aa14.13□□□□□ -0.15
USP42-206ENST00000479544 TLCD1Q96CP7 247 aa14.13□□□□□ -0.15
USP42-206ENST00000479544 ATP9BO43861 1147 aa14.13□□□□□ -0.15
USP42-206ENST00000479544 YWHAEP62258 255 aaKnown RBP14.13□□□□□ -0.15
USP42-206ENST00000479544 WDR72Q3MJ13 1102 aa14.13□□□□□ -0.15
USP42-206ENST00000479544 OTOAQ7RTW8 1153 aa14.13□□□□□ -0.15
USP42-206ENST00000479544 AFAP1L2Q8N4X5 818 aa14.13□□□□□ -0.15
USP42-206ENST00000479544 FEZF2Q8TBJ5 459 aa14.13□□□□□ -0.15
USP42-206ENST00000479544 ZNF483Q8TF39 744 aaPredicted RBP14.13□□□□□ -0.15
USP42-206ENST00000479544 DHX35Q9H5Z1 703 aaKnown RBP14.13□□□□□ -0.15
USP42-206ENST00000479544 TMEM165Q9HC07 324 aa14.13□□□□□ -0.15
USP42-206ENST00000479544 E9PBE3 544 aa14.13□□□□□ -0.15
USP42-206ENST00000479544 KLHL41O60662 606 aa14.13□□□□□ -0.15
USP42-206ENST00000479544 CLPTM1O96005 669 aa14.13□□□□□ -0.15
USP42-206ENST00000479544 KRT7P08729 469 aa14.13□□□□□ -0.15
USP42-206ENST00000479544 FAM200BP0CF97 657 aa14.13□□□□□ -0.15
USP42-206ENST00000479544 SERPINB5P36952 375 aa14.13□□□□□ -0.15
USP42-206ENST00000479544 RPL10AP62906 217 aaKnown RBP14.13□□□□□ -0.15
USP42-206ENST00000479544 SLC25A3Q00325 362 aa14.13□□□□□ -0.15
USP42-206ENST00000479544 TFDP2Q14188 446 aa14.13□□□□□ -0.15
USP42-206ENST00000479544 GPAT2Q6NUI2 795 aa14.13□□□□□ -0.15
USP42-206ENST00000479544 EFHD1Q9BUP0 239 aa14.13□□□□□ -0.15
USP42-206ENST00000479544 C20orf96Q9NUD7 363 aaPredicted RBP14.13□□□□□ -0.15
USP42-206ENST00000479544 RBAK-RBAKDNI3L0D1 243 aa14.12□□□□□ -0.15
USP42-206ENST00000479544 M0QYV0 167 aa14.12□□□□□ -0.15
USP42-206ENST00000479544 PIK3CDO00329 1044 aa14.12□□□□□ -0.15
USP42-206ENST00000479544 EEF1DP29692 281 aaKnown RBP14.12□□□□□ -0.15
USP42-206ENST00000479544 PSEN1P49768 467 aa14.12□□□□□ -0.15
USP42-206ENST00000479544 CYLC2Q14093 348 aaPredicted RBP14.12□□□□□ -0.15
USP42-206ENST00000479544 FSCBQ5H9T9 825 aa14.12□□□□□ -0.15
USP42-206ENST00000479544 DSTYKQ6XUX3 929 aa14.12□□□□□ -0.15
USP42-206ENST00000479544 CDAN1Q8IWY9 1227 aa14.12□□□□□ -0.15
USP42-206ENST00000479544 RIBC1Q8N443 379 aaPredicted RBP14.12□□□□□ -0.15
USP42-206ENST00000479544 EPS8L1Q8TE68 723 aa14.12□□□□□ -0.15
USP42-206ENST00000479544 ALKBH8Q96BT7 664 aaKnown RBP14.12□□□□□ -0.15
USP42-206ENST00000479544 DNAI2Q9GZS0 605 aa14.12□□□□□ -0.15
USP42-206ENST00000479544 UNC45AQ9H3U1 944 aa14.12□□□□□ -0.15
USP42-206ENST00000479544 ARL8BQ9NVJ2 186 aa14.12□□□□□ -0.15
USP42-206ENST00000479544 ATXN2Q99700 1313 aaKnown RBP14.12□□□□□ -0.15
USP42-206ENST00000479544 GPR75-ASB3A0A0A6YYF3 556 aa14.12□□□□□ -0.15
USP42-206ENST00000479544 POLRMTO00411 1230 aaKnown RBP14.12□□□□□ -0.15
USP42-206ENST00000479544 EIF3DO15371 548 aaKnown RBP eCLIP14.12□□□□□ -0.15
USP42-206ENST00000479544 GZMAP12544 262 aa14.12□□□□□ -0.15
USP42-206ENST00000479544 NUDT2P50583 147 aa14.12□□□□□ -0.15
USP42-206ENST00000479544 COPAP53621 1224 aa14.12□□□□□ -0.15
USP42-206ENST00000479544 RIPK1Q13546 671 aa14.12□□□□□ -0.15
USP42-206ENST00000479544 CDC42EP5Q6NZY7 148 aa14.12□□□□□ -0.15
USP42-206ENST00000479544 PIGWQ7Z7B1 504 aa14.12□□□□□ -0.15
USP42-206ENST00000479544 DEFB107AQ8IZN7 70 aa14.12□□□□□ -0.15
USP42-206ENST00000479544 SLC38A10Q9HBR0 1119 aa14.12□□□□□ -0.15
USP42-206ENST00000479544 LRRC4CQ9HCJ2 640 aa14.12□□□□□ -0.15
USP42-206ENST00000479544 KCNQ5Q9NR82 932 aa14.12□□□□□ -0.15
USP42-206ENST00000479544 ASTN1O14525 1302 aa14.12□□□□□ -0.15
USP42-206ENST00000479544 RPTORQ8N122 1335 aa14.12□□□□□ -0.15
USP42-206ENST00000479544 AHCYL1O43865 530 aa14.12□□□□□ -0.15
USP42-206ENST00000479544 TBC1D12O60347 775 aa14.12□□□□□ -0.15
USP42-206ENST00000479544 MSX2P35548 267 aaPredicted RBP14.12□□□□□ -0.15
USP42-206ENST00000479544 CENPCQ03188 943 aa14.12□□□□□ -0.15
USP42-206ENST00000479544 ITKQ08881 620 aa14.12□□□□□ -0.15
USP42-206ENST00000479544 SLC1A5Q15758 541 aa14.12□□□□□ -0.15
USP42-206ENST00000479544 ZNF667Q5HYK9 610 aa14.12□□□□□ -0.15
USP42-206ENST00000479544 PRR5LQ6MZQ0 368 aa14.12□□□□□ -0.15
USP42-206ENST00000479544 RFWD3Q6PCD5 774 aa14.12□□□□□ -0.15
USP42-206ENST00000479544 KDELC2Q7Z4H8 507 aa14.12□□□□□ -0.15
USP42-206ENST00000479544 ZNF317Q96PQ6 595 aaPredicted RBP14.12□□□□□ -0.15
USP42-206ENST00000479544 DCUN1D5Q9BTE7 237 aa14.12□□□□□ -0.15
USP42-206ENST00000479544 POLR3FQ9H1D9 316 aaPredicted RBP14.12□□□□□ -0.15
USP42-206ENST00000479544 DNAJC16Q9Y2G8 782 aa14.12□□□□□ -0.15
USP42-206ENST00000479544 DDX3YO15523 660 aaKnown RBP14.12□□□□□ -0.15
USP42-206ENST00000479544 VCAM1P19320 739 aa14.12□□□□□ -0.15
USP42-206ENST00000479544 FAAP100Q0VG06 881 aa14.12□□□□□ -0.15
USP42-206ENST00000479544 FASTKD3Q14CZ7 662 aaKnown RBP14.12□□□□□ -0.15
USP42-206ENST00000479544 ZNF784Q8NCA9 323 aaPredicted RBP14.12□□□□□ -0.15
USP42-206ENST00000479544 USP6NLQ92738 828 aa14.12□□□□□ -0.15
USP42-206ENST00000479544 ANKRD36BP1Q96IX9 119 aa14.12□□□□□ -0.15
USP42-206ENST00000479544 CLMNQ96JQ2 1002 aa14.12□□□□□ -0.15
USP42-206ENST00000479544 OSBPP22059 807 aa14.11□□□□□ -0.15
USP42-206ENST00000479544 ELK3P41970 407 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms