RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 PYGLP06737 847 aa6.02□□□□□ -1.45
UPF3B-203ENST00000478840 ITGA2BP08514 1039 aa6.02□□□□□ -1.45
UPF3B-203ENST00000478840 INHBBP09529 407 aa6.02□□□□□ -1.45
UPF3B-203ENST00000478840 FAM163BP0C2L3 166 aa6.02□□□□□ -1.45
UPF3B-203ENST00000478840 NPPBP16860 134 aa6.02□□□□□ -1.45
UPF3B-203ENST00000478840 GCSHP23434 173 aa6.02□□□□□ -1.45
UPF3B-203ENST00000478840 CST5P28325 142 aaPredicted RBP6.02□□□□□ -1.45
UPF3B-203ENST00000478840 SLC5A2P31639 672 aa6.02□□□□□ -1.45
UPF3B-203ENST00000478840 AFF3P51826 1226 aaKnown RBP6.02□□□□□ -1.45
UPF3B-203ENST00000478840 IQCB1Q15051 598 aa6.02□□□□□ -1.45
UPF3B-203ENST00000478840 SLC4A8Q2Y0W8 1093 aa6.02□□□□□ -1.45
UPF3B-203ENST00000478840 ARHGAP15Q53QZ3 475 aa6.02□□□□□ -1.45
UPF3B-203ENST00000478840 TMTC4Q5T4D3 741 aa6.02□□□□□ -1.45
UPF3B-203ENST00000478840 RAP1GAP2Q684P5 730 aa6.02□□□□□ -1.45
UPF3B-203ENST00000478840 MRNIPQ6NTE8 343 aa6.02□□□□□ -1.45
UPF3B-203ENST00000478840 EFCAB12Q6NXP0 572 aa6.02□□□□□ -1.45
UPF3B-203ENST00000478840 CRTC1Q6UUV9 634 aa6.02□□□□□ -1.45
UPF3B-203ENST00000478840 CCDC28AQ8IWP9 274 aa6.02□□□□□ -1.45
UPF3B-203ENST00000478840 RAPGEF4Q8WZA2 1011 aa6.02□□□□□ -1.45
UPF3B-203ENST00000478840 SKA1Q96BD8 255 aa6.02□□□□□ -1.45
UPF3B-203ENST00000478840 KRTAP4-12Q9BQ66 201 aa6.02□□□□□ -1.45
UPF3B-203ENST00000478840 EIF2AK1Q9BQI3 630 aaKnown RBP6.02□□□□□ -1.45
UPF3B-203ENST00000478840 FAM167BQ9BTA0 163 aa6.02□□□□□ -1.45
UPF3B-203ENST00000478840 DDX23Q9BUQ8 820 aaKnown RBP6.02□□□□□ -1.45
UPF3B-203ENST00000478840 PCDHAC1Q9H158 963 aa6.02□□□□□ -1.45
UPF3B-203ENST00000478840 MRPS18AQ9NVS2 196 aaKnown RBP6.02□□□□□ -1.45
UPF3B-203ENST00000478840 ZSCAN32Q9NX65 697 aa6.02□□□□□ -1.45
UPF3B-203ENST00000478840 HECAQ9UBI9 543 aaPredicted RBP6.02□□□□□ -1.45
UPF3B-203ENST00000478840 HERC5Q9UII4 1024 aaKnown RBP6.02□□□□□ -1.45
UPF3B-203ENST00000478840 ZMYND8Q9ULU4 1186 aaPredicted RBP6.02□□□□□ -1.45
UPF3B-203ENST00000478840 HDAC5Q9UQL6 1122 aa6.02□□□□□ -1.45
UPF3B-203ENST00000478840 ATP11BQ9Y2G3 1177 aa6.02□□□□□ -1.45
UPF3B-203ENST00000478840 TCAF2A6NFQ2 919 aa6.01□□□□□ -1.45
UPF3B-203ENST00000478840 DCLK1O15075 740 aa6.01□□□□□ -1.45
UPF3B-203ENST00000478840 ASNA1O43681 348 aa6.01□□□□□ -1.45
UPF3B-203ENST00000478840 TRIM13O60858 407 aa6.01□□□□□ -1.45
UPF3B-203ENST00000478840 PRSS23O95084 383 aa6.01□□□□□ -1.45
UPF3B-203ENST00000478840 ITGB1P05556 798 aa6.01□□□□□ -1.45
UPF3B-203ENST00000478840 TPH1P17752 444 aa6.01□□□□□ -1.45
UPF3B-203ENST00000478840 RPS19P39019 145 aaKnown RBP6.01□□□□□ -1.45
UPF3B-203ENST00000478840 CASP2P42575 452 aa6.01□□□□□ -1.45
UPF3B-203ENST00000478840 PIGFQ07326 219 aa6.01□□□□□ -1.45
UPF3B-203ENST00000478840 NSUN2Q08J23 767 aaKnown RBP eCLIP6.01□□□□□ -1.45
UPF3B-203ENST00000478840 TAF12Q16514 161 aa6.01□□□□□ -1.45
UPF3B-203ENST00000478840 PLA1AQ53H76 456 aa6.01□□□□□ -1.45
UPF3B-203ENST00000478840 NOMO2Q5JPE7 1267 aa6.01□□□□□ -1.45
UPF3B-203ENST00000478840 EEF1AKMT2Q5JPI9 291 aaKnown RBP6.01□□□□□ -1.45
UPF3B-203ENST00000478840 WDR78Q5VTH9 848 aa6.01□□□□□ -1.45
UPF3B-203ENST00000478840 PLEKHH3Q7Z736 793 aa6.01□□□□□ -1.45
UPF3B-203ENST00000478840 TICAM2Q86XR7 235 aa6.01□□□□□ -1.45
UPF3B-203ENST00000478840 CFAP52Q8N1V2 620 aa6.01□□□□□ -1.45
UPF3B-203ENST00000478840 SIMC1Q8NDZ2 872 aa6.01□□□□□ -1.45
UPF3B-203ENST00000478840 BHLHE22Q8NFJ8 381 aaPredicted RBP6.01□□□□□ -1.45
UPF3B-203ENST00000478840 SLC30A5Q8TAD4 765 aa6.01□□□□□ -1.45
UPF3B-203ENST00000478840 SMCR8Q8TEV9 937 aaPredicted RBP6.01□□□□□ -1.45
UPF3B-203ENST00000478840 RBM15Q96T37 977 aaKnown RBP eCLIP6.01□□□□□ -1.45
UPF3B-203ENST00000478840 PRPF18Q99633 342 aaKnown RBP6.01□□□□□ -1.45
UPF3B-203ENST00000478840 DPYSL5Q9BPU6 564 aa6.01□□□□□ -1.45
UPF3B-203ENST00000478840 CPPED1Q9BRF8 314 aaPredicted RBP6.01□□□□□ -1.45
UPF3B-203ENST00000478840 TLR10Q9BXR5 811 aa6.01□□□□□ -1.45
UPF3B-203ENST00000478840 TP63Q9H3D4 680 aaPredicted RBP6.01□□□□□ -1.45
UPF3B-203ENST00000478840 C12orf65Q9H3J6 166 aaKnown RBP6.01□□□□□ -1.45
UPF3B-203ENST00000478840 ZBTB26Q9HCK0 441 aa6.01□□□□□ -1.45
UPF3B-203ENST00000478840 SAYSD1Q9NPB0 183 aa6.01□□□□□ -1.45
UPF3B-203ENST00000478840 DNMT3BQ9UBC3 853 aaKnown RBP6.01□□□□□ -1.45
UPF3B-203ENST00000478840 TMEM98Q9Y2Y6 226 aa6.01□□□□□ -1.45
UPF3B-203ENST00000478840 MTO1Q9Y2Z2 717 aaKnown RBP6.01□□□□□ -1.45
UPF3B-203ENST00000478840 RNF114Q9Y508 228 aa6.01□□□□□ -1.45
UPF3B-203ENST00000478840 A0A0B4J269 797 aa6□□□□□ -1.45
UPF3B-203ENST00000478840 PAX4O43316 350 aa6□□□□□ -1.45
UPF3B-203ENST00000478840 NOBOXO60393 691 aa6□□□□□ -1.45
UPF3B-203ENST00000478840 CDC14BO60729 498 aa6□□□□□ -1.45
UPF3B-203ENST00000478840 NTSR2O95665 410 aa6□□□□□ -1.45
UPF3B-203ENST00000478840 ATXN1LP0C7T5 689 aaKnown RBP6□□□□□ -1.45
UPF3B-203ENST00000478840 FCER1AP12319 257 aa6□□□□□ -1.45
UPF3B-203ENST00000478840 CKMT1AP12532 417 aa6□□□□□ -1.45
UPF3B-203ENST00000478840 GNAT2P19087 354 aa6□□□□□ -1.45
UPF3B-203ENST00000478840 MST1P26927 711 aa6□□□□□ -1.45
UPF3B-203ENST00000478840 LRPAP1P30533 357 aa6□□□□□ -1.45
UPF3B-203ENST00000478840 ADD2P35612 726 aa6□□□□□ -1.45
UPF3B-203ENST00000478840 PTDSS1P48651 473 aaKnown RBP6□□□□□ -1.45
UPF3B-203ENST00000478840 PNLIPRP1P54315 467 aa6□□□□□ -1.45
UPF3B-203ENST00000478840 SLURP1P55000 103 aa6□□□□□ -1.45
UPF3B-203ENST00000478840 GEMIN4P57678 1058 aaKnown RBP6□□□□□ -1.45
UPF3B-203ENST00000478840 BOP1Q14137 746 aaKnown RBP6□□□□□ -1.45
UPF3B-203ENST00000478840 ZNF750Q32MQ0 723 aa6□□□□□ -1.45
UPF3B-203ENST00000478840 MGAT5BQ3V5L5 792 aa6□□□□□ -1.45
UPF3B-203ENST00000478840 DCAF17Q5H9S7 520 aaPredicted RBP6□□□□□ -1.45
UPF3B-203ENST00000478840 HYIQ5T013 277 aa6□□□□□ -1.45
UPF3B-203ENST00000478840 SULT6B1Q6IMI4 303 aa6□□□□□ -1.45
UPF3B-203ENST00000478840 MED25Q71SY5 747 aa6□□□□□ -1.45
UPF3B-203ENST00000478840 LRRTM4Q86VH4 590 aa6□□□□□ -1.45
UPF3B-203ENST00000478840 HERC6Q8IVU3 1022 aa6□□□□□ -1.45
UPF3B-203ENST00000478840 TMEM151BQ8IW70 566 aa6□□□□□ -1.45
UPF3B-203ENST00000478840 RNF169Q8NCN4 708 aa6□□□□□ -1.45
UPF3B-203ENST00000478840 MDGA1Q8NFP4 955 aa6□□□□□ -1.45
UPF3B-203ENST00000478840 POC1BQ8TC44 478 aa6□□□□□ -1.45
UPF3B-203ENST00000478840 ST8SIA2Q92186 375 aa6□□□□□ -1.45
UPF3B-203ENST00000478840 FAM227BQ96M60 508 aa6□□□□□ -1.45
UPF3B-203ENST00000478840 SLC46A1Q96NT5 459 aa6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms