RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, human

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-212	ENST00000477520	LIPI	Q6XZB0	460 aa		5.03	□□□□□ -1.6
PTCD3-212	ENST00000477520	PHLDB2	Q86SQ0	1253 aa		5.03	□□□□□ -1.6
PTCD3-212	ENST00000477520	METTL16	Q86W50	562 aa	Known RBP	5.03	□□□□□ -1.6
PTCD3-212	ENST00000477520	COL23A1	Q86Y22	540 aa	Predicted RBP	5.03	□□□□□ -1.6
PTCD3-212	ENST00000477520	ANKRD13B	Q86YJ7	626 aa		5.03	□□□□□ -1.6
PTCD3-212	ENST00000477520	ST13P4	Q8IZP2	240 aa	Predicted RBP	5.03	□□□□□ -1.6
PTCD3-212	ENST00000477520	KIRREL3	Q8IZU9	778 aa		5.03	□□□□□ -1.6
PTCD3-212	ENST00000477520	LINS1	Q8NG48	757 aa		5.03	□□□□□ -1.6
PTCD3-212	ENST00000477520	FNIP1	Q8TF40	1166 aa		5.03	□□□□□ -1.6
PTCD3-212	ENST00000477520	FAM136A	Q96C01	138 aa		5.03	□□□□□ -1.6
PTCD3-212	ENST00000477520	TLCD1	Q96CP7	247 aa		5.03	□□□□□ -1.6
PTCD3-212	ENST00000477520	VPS50	Q96JG6	964 aa		5.03	□□□□□ -1.6
PTCD3-212	ENST00000477520	SPATA16	Q9BXB7	569 aa		5.03	□□□□□ -1.6
PTCD3-212	ENST00000477520	ECT2	Q9H8V3	914 aa		5.03	□□□□□ -1.6
PTCD3-212	ENST00000477520	PREB	Q9HCU5	417 aa		5.03	□□□□□ -1.6
PTCD3-212	ENST00000477520	USP40	Q9NVE5	1235 aa		5.03	□□□□□ -1.6
PTCD3-212	ENST00000477520	DDX43	Q9NXZ2	648 aa	Known RBP	5.03	□□□□□ -1.6
PTCD3-212	ENST00000477520	PTTG2	Q9NZH5	202 aa		5.03	□□□□□ -1.6
PTCD3-212	ENST00000477520	ADAM22	Q9P0K1	906 aa		5.03	□□□□□ -1.6
PTCD3-212	ENST00000477520	DLGAP2	Q9P1A6	1054 aa		5.03	□□□□□ -1.6
PTCD3-212	ENST00000477520	ZNF212	Q9UDV6	495 aa		5.03	□□□□□ -1.6
PTCD3-212	ENST00000477520	CNOT7	Q9UIV1	285 aa	Known RBP	5.03	□□□□□ -1.6
PTCD3-212	ENST00000477520	RWDD2A	Q9UIY3	292 aa		5.03	□□□□□ -1.6
PTCD3-212	ENST00000477520	ZBTB1	Q9Y2K1	713 aa		5.03	□□□□□ -1.6
PTCD3-212	ENST00000477520	FADS3	Q9Y5Q0	445 aa		5.03	□□□□□ -1.6
PTCD3-212	ENST00000477520	C4B	P0C0L5	1744 aa		5.03	□□□□□ -1.6
PTCD3-212	ENST00000477520	TJP1	Q07157	1748 aa		5.03	□□□□□ -1.6
PTCD3-212	ENST00000477520	PNPLA7	Q6ZV29	1317 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	ARHGAP10	A1A4S6	786 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	TMEM247	A6NEH6	219 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520		F8W031	263 aa	Predicted RBP	5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520		H0YGN5	161 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	MATN2	O00339	956 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	SH2B2	O14492	632 aa	Predicted RBP	5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	CPLX1	O14810	134 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	FOXP2	O15409	715 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	P4HA2	O15460	535 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	CTNND1	O60716	968 aa	Known RBP	5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	HEXIM1	O94992	359 aa	Known RBP	5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	TJP3	O95049	919 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	UNC5C	O95185	931 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	GJB6	O95452	261 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	PARN	O95453	639 aa	Known RBP	5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	FSHB	P01225	129 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	ASL	P04424	464 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	HNRNPC	P07910	306 aa	Known RBP eCLIP	5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	NUDT17	P0C025	328 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	MSL3P1	P0C860	447 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	TPBGL	P0DKB5	382 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	MYB	P10242	640 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	TMOD1	P28289	359 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	PDIA3	P30101	505 aa	Known RBP	5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	MLH1	P40692	756 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	CCT8	P50990	548 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	FXR1	P51114	621 aa	Known RBP eCLIP	5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	COPB1	P53618	953 aa	Known RBP	5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	CACNA2D1	P54289	1103 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	RAD23B	P54727	409 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	ARPC4	P59998	168 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	KIF23	Q02241	960 aa	Predicted RBP	5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	ADCY1	Q08828	1119 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	STK3	Q13188	491 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	TRIM29	Q14134	588 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	BTG3	Q14201	252 aa	Predicted RBP	5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	PTPA	Q15257	358 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	MCMDC2	Q4G0Z9	681 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	RILPL1	Q5EBL4	403 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	FKBP15	Q5T1M5	1219 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	C10orf76	Q5T2E6	689 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	SYCP2L	Q5T4T6	812 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	SOGA3	Q5TF21	947 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	KCTD16	Q68DU8	428 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	THOC7	Q6I9Y2	204 aa	Known RBP	5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	GRAMD4	Q6IC98	578 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	ZNF280D	Q6N043	979 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	SHC4	Q6S5L8	630 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	CLEC4G	Q6UXB4	293 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	KSR2	Q6VAB6	950 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	COPS6	Q7L5N1	327 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	PPP1R42	Q7Z4L9	355 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	CCDC84	Q86UT8	332 aa	Predicted RBP	5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	NELFCD	Q8IXH7	590 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	PEX5L	Q8IYB4	626 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	ARHGAP24	Q8N264	748 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	SH2D3C	Q8N5H7	860 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	SCAI	Q8N9R8	606 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	NUP43	Q8NFH3	380 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	PLBD2	Q8NHP8	589 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	DQX1	Q8TE96	717 aa	Known RBP	5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	DIS3L	Q8TF46	1054 aa	Known RBP	5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	DDX1	Q92499	740 aa	Known RBP	5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	DGCR14	Q96DF8	476 aa	Known RBP	5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	ZNF333	Q96JL9	665 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	CLMN	Q96JQ2	1002 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	SNX27	Q96L92	541 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	NOX5	Q96PH1	765 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	SYT15	Q9BQS2	421 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	UBAC1	Q9BSL1	405 aa		5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	PUS3	Q9BZE2	481 aa	Known RBP	5.02	□□□□□ -1.61
PTCD3-212	ENST00000477520	ROPN1B	Q9BZX4	212 aa	Predicted RBP	5.02	□□□□□ -1.61

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