RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 KLHL7Q8IXQ5 586 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 DCAF4Q8WV16 495 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 OPTNQ96CV9 577 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 CGREF1Q99674 301 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 ZNF518BQ9C0D4 1074 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 BHMT2Q9H2M3 363 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 CHST7Q9NS84 486 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 FAIMQ9NVQ4 179 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 STRIP2Q9ULQ0 834 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 PACSIN2Q9UNF0 486 aaPredicted RBP5.63□□□□□ -1.51
SYNE1-220ENST00000471834 SOWAHBA6NEL2 793 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 SPDYE5A6NIY4 337 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 E9PBE3 544 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 GCATO75600 419 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 PRSS23O95084 383 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 ZBED1O96006 694 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 ACTN1P12814 892 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 ZNF26P17031 533 aaPredicted RBP5.63□□□□□ -1.51
SYNE1-220ENST00000471834 CHKAP35790 457 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 IL9RQ01113 521 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 WASHC5Q12768 1159 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 TMEM259Q4ZIN3 620 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 FAM47CQ5HY64 1035 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 LCA5Q86VQ0 697 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 TPH2Q8IWU9 490 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 BBS5Q8N3I7 341 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 ACMSDQ8TDX5 336 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 SLC44A1Q8WWI5 657 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 C18orf8Q96DM3 657 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 SIGLEC11Q96RL6 698 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 NYXQ9GZU5 481 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 TIMMDC1Q9NPL8 285 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 ITGA11Q9UKX5 1188 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 PHTF1Q9UMS5 762 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 STAU1O95793 577 aaKnown RBP5.63□□□□□ -1.51
SYNE1-220ENST00000471834 HARSP12081 509 aaKnown RBP5.63□□□□□ -1.51
SYNE1-220ENST00000471834 RRM1P23921 792 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 PSMC2P35998 433 aaKnown RBP5.63□□□□□ -1.51
SYNE1-220ENST00000471834 NOMO3P69849 1222 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 CALCRLQ16602 461 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 TTC19Q6DKK2 380 aaPredicted RBP5.63□□□□□ -1.51
SYNE1-220ENST00000471834 BNIPLQ7Z465 357 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 HAUS6Q7Z4H7 955 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 CCDC24Q8N4L8 307 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 UHMK1Q8TAS1 419 aaKnown RBP5.63□□□□□ -1.51
SYNE1-220ENST00000471834 GRK7Q8WTQ7 553 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 PRCCQ92733 491 aaPredicted RBP5.63□□□□□ -1.51
SYNE1-220ENST00000471834 SENP7Q9BQF6 1050 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 KIF9Q9HAQ2 790 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 MCM9Q9NXL9 1143 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 MAP3K20Q9NYL2 800 aaKnown RBP5.63□□□□□ -1.51
SYNE1-220ENST00000471834 MSH4O15457 936 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 LIASO43766 372 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 RPS6KA4O75676 772 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 ZNF23P17027 643 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 PLTPP55058 493 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 GEMIN4P57678 1058 aaKnown RBP5.62□□□□□ -1.51
SYNE1-220ENST00000471834 ZYXQ15942 572 aaKnown RBP5.62□□□□□ -1.51
SYNE1-220ENST00000471834 LMNTD2Q8IXW0 634 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 B4GALNT2Q8NHY0 566 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 GOLPH3Q9H4A6 298 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 LRRD1A4D1F6 860 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 ALDH3A1P30838 453 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 HIBADHP31937 336 aaKnown RBP5.62□□□□□ -1.51
SYNE1-220ENST00000471834 PNMA8AQ86V59 439 aaPredicted RBP5.62□□□□□ -1.51
SYNE1-220ENST00000471834 MCOLN2Q8IZK6 566 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 ACTRT2Q8TDY3 377 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 CYP2S1Q96SQ9 504 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 SORT1Q99523 831 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 RABGEF1Q9UJ41 708 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 SQORQ9Y6N5 450 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 E9PQ18 207 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 DNAJA2O60884 412 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 COBLO75128 1261 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 SERPINB7O75635 380 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 RSL1D1O76021 490 aaKnown RBP5.62□□□□□ -1.51
SYNE1-220ENST00000471834 CDK4P11802 303 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 GARTP22102 1010 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 SCNN1AP37088 669 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 E2F5Q15329 346 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 INSCQ1MX18 579 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 TSNAXIP1Q2TAA8 658 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 KCTD21Q4G0X4 260 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 ARHGAP24Q8N264 748 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 CXorf38Q8TB03 319 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 FNBP1Q96RU3 617 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 RANBP9Q96S59 729 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 TMEM117Q9H0C3 514 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 VCX3BQ9H321 246 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 VCX3AQ9NNX9 186 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 FAM86B1E9PN63 330 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 FAM86B2P0C5J1 330 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 GLDCP23378 1020 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 TECP42680 631 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 GYG1P46976 350 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 TRIM72Q6ZMU5 477 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 PDSS2Q86YH6 399 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 CPSF7Q8N684 471 aaKnown RBP5.62□□□□□ -1.51
SYNE1-220ENST00000471834 PCYOX1LQ8NBM8 494 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 ERMNQ8TAM6 284 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms