RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 CCT6BQ92526 530 aa20.14■□□□□ 0.81
VIM-203ENST00000469543 SERPINB12Q96P63 405 aa20.14■□□□□ 0.81
VIM-203ENST00000469543 MMP19Q99542 508 aa20.14■□□□□ 0.81
VIM-203ENST00000469543 hCG_1818297A0A087WSY0 165 aa20.13■□□□□ 0.81
VIM-203ENST00000469543 LRCH4O75427 683 aa20.13■□□□□ 0.81
VIM-203ENST00000469543 TJP3O95049 919 aa20.13■□□□□ 0.81
VIM-203ENST00000469543 INSRRP14616 1297 aa20.13■□□□□ 0.81
VIM-203ENST00000469543 MAN1A1P33908 653 aa20.13■□□□□ 0.81
VIM-203ENST00000469543 RAD23BP54727 409 aa20.13■□□□□ 0.81
VIM-203ENST00000469543 SYDE1Q6ZW31 735 aaPredicted RBP20.13■□□□□ 0.81
VIM-203ENST00000469543 TAOK1Q7L7X3 1001 aa20.13■□□□□ 0.81
VIM-203ENST00000469543 SIP14410 1827 aa20.13■□□□□ 0.81
VIM-203ENST00000469543 POC1B-GALNT4F8VUJ3 575 aa20.13■□□□□ 0.81
VIM-203ENST00000469543 SPAG7O75391 227 aa20.13■□□□□ 0.81
VIM-203ENST00000469543 ERBB2P04626 1255 aa20.13■□□□□ 0.81
VIM-203ENST00000469543 ZNF286BP0CG31 522 aa20.13■□□□□ 0.81
VIM-203ENST00000469543 PSMC1P62191 440 aaKnown RBP20.13■□□□□ 0.81
VIM-203ENST00000469543 TFDP3Q5H9I0 405 aa20.13■□□□□ 0.81
VIM-203ENST00000469543 PIGWQ7Z7B1 504 aa20.13■□□□□ 0.81
VIM-203ENST00000469543 ANKMY2Q8IV38 441 aa20.13■□□□□ 0.81
VIM-203ENST00000469543 LRRN4Q8WUT4 740 aa20.13■□□□□ 0.81
VIM-203ENST00000469543 TCP11Q8WWU5 503 aa20.13■□□□□ 0.81
VIM-203ENST00000469543 PIWIL1Q96J94 861 aaKnown RBP20.13■□□□□ 0.81
VIM-203ENST00000469543 LGR5O75473 907 aa20.12■□□□□ 0.81
VIM-203ENST00000469543 GRAP2O75791 330 aa20.12■□□□□ 0.81
VIM-203ENST00000469543 STAG3L1P0CL83 205 aa20.12■□□□□ 0.81
VIM-203ENST00000469543 EIF4BP23588 611 aaKnown RBP20.12■□□□□ 0.81
VIM-203ENST00000469543 MKRN3Q13064 507 aaKnown RBP20.12■□□□□ 0.81
VIM-203ENST00000469543 NUGGCQ68CJ6 796 aa20.12■□□□□ 0.81
VIM-203ENST00000469543 METTL5Q9NRN9 209 aaKnown RBP20.12■□□□□ 0.81
VIM-203ENST00000469543 HOMER3Q9NSC5 361 aa20.12■□□□□ 0.81
VIM-203ENST00000469543 C3orf70A6NLC5 250 aaPredicted RBP20.12■□□□□ 0.81
VIM-203ENST00000469543 TNNC2P02585 160 aa20.12■□□□□ 0.81
VIM-203ENST00000469543 GCAP28676 217 aa20.12■□□□□ 0.81
VIM-203ENST00000469543 TMED2Q15363 201 aa20.12■□□□□ 0.81
VIM-203ENST00000469543 PLPPR4Q7Z2D5 763 aa20.12■□□□□ 0.81
VIM-203ENST00000469543 ZBED8Q8IZ13 594 aa20.12■□□□□ 0.81
VIM-203ENST00000469543 ALLCQ8N6M5 410 aa20.12■□□□□ 0.81
VIM-203ENST00000469543 CCDC197Q8NCU1 140 aa20.12■□□□□ 0.81
VIM-203ENST00000469543 C3orf20Q8ND61 904 aa20.12■□□□□ 0.81
VIM-203ENST00000469543 OPTNQ96CV9 577 aa20.12■□□□□ 0.81
VIM-203ENST00000469543 THOC1Q96FV9 657 aaKnown RBP20.12■□□□□ 0.81
VIM-203ENST00000469543 ANKRD36BP1Q96IX9 119 aa20.12■□□□□ 0.81
VIM-203ENST00000469543 FAM167AQ96KS9 214 aa20.12■□□□□ 0.81
VIM-203ENST00000469543 ELOVL4Q9GZR5 314 aa20.12■□□□□ 0.81
VIM-203ENST00000469543 SYNCQ9H7C4 482 aa20.12■□□□□ 0.81
VIM-203ENST00000469543 RPF1Q9H9Y2 349 aaKnown RBP20.12■□□□□ 0.81
VIM-203ENST00000469543 GINS2Q9Y248 185 aa20.12■□□□□ 0.81
VIM-203ENST00000469543 DNAJC25-GNG10A0A024R161 153 aa20.11■□□□□ 0.81
VIM-203ENST00000469543 CST8O60676 142 aa20.11■□□□□ 0.81
VIM-203ENST00000469543 SCTRP47872 440 aa20.11■□□□□ 0.81
VIM-203ENST00000469543 MOGSQ13724 837 aa20.11■□□□□ 0.81
VIM-203ENST00000469543 FAM133BQ5BKY9 247 aaKnown RBP20.11■□□□□ 0.81
VIM-203ENST00000469543 MAP1SQ66K74 1059 aaPredicted RBP20.11■□□□□ 0.81
VIM-203ENST00000469543 C12orf29Q8N999 325 aa20.11■□□□□ 0.81
VIM-203ENST00000469543 ACTL9Q8TC94 416 aa20.11■□□□□ 0.81
VIM-203ENST00000469543 RBM41Q96IZ5 413 aaKnown RBP20.11■□□□□ 0.81
VIM-203ENST00000469543 PAIP2Q9BPZ3 127 aaKnown RBP20.11■□□□□ 0.81
VIM-203ENST00000469543 HAUS2Q9NVX0 235 aa20.11■□□□□ 0.81
VIM-203ENST00000469543 AGTPBP1Q9UPW5 1226 aa20.11■□□□□ 0.81
VIM-203ENST00000469543 OASLQ15646 514 aaKnown RBP20.11■□□□□ 0.81
VIM-203ENST00000469543 ZNF667Q5HYK9 610 aa20.11■□□□□ 0.81
VIM-203ENST00000469543 ANKRD22Q5VYY1 191 aa20.11■□□□□ 0.81
VIM-203ENST00000469543 ERO1BQ86YB8 467 aa20.11■□□□□ 0.81
VIM-203ENST00000469543 SLC4A11Q8NBS3 891 aa20.11■□□□□ 0.81
VIM-203ENST00000469543 ABCF3Q9NUQ8 709 aa20.11■□□□□ 0.81
VIM-203ENST00000469543 ATXN2Q99700 1313 aaKnown RBP20.11■□□□□ 0.81
VIM-203ENST00000469543 ASAP2O43150 1006 aa20.1■□□□□ 0.81
VIM-203ENST00000469543 B4GALT4O60513 344 aa20.1■□□□□ 0.81
VIM-203ENST00000469543 LSM8O95777 96 aaKnown RBP20.1■□□□□ 0.81
VIM-203ENST00000469543 IREB2P48200 963 aaKnown RBP20.1■□□□□ 0.81
VIM-203ENST00000469543 AP3M2P53677 418 aa20.1■□□□□ 0.81
VIM-203ENST00000469543 OTUD4Q01804 1114 aaKnown RBP20.1■□□□□ 0.81
VIM-203ENST00000469543 SLC25A11Q02978 314 aaKnown RBP20.1■□□□□ 0.81
VIM-203ENST00000469543 ZCCHC9Q8N567 271 aaKnown RBP20.1■□□□□ 0.81
VIM-203ENST00000469543 HSPH1Q92598 858 aa20.1■□□□□ 0.81
VIM-203ENST00000469543 GGA2Q9UJY4 613 aa20.1■□□□□ 0.81
VIM-203ENST00000469543 RASA4BC9J798 803 aa20.1■□□□□ 0.81
VIM-203ENST00000469543 RASA4O43374 803 aa20.1■□□□□ 0.81
VIM-203ENST00000469543 MAP3K6O95382 1288 aa20.1■□□□□ 0.81
VIM-203ENST00000469543 MMRN1Q13201 1228 aa20.1■□□□□ 0.81
VIM-203ENST00000469543 PIGHQ14442 188 aaPredicted RBP20.1■□□□□ 0.81
VIM-203ENST00000469543 MSS51Q4VC12 460 aa20.1■□□□□ 0.81
VIM-203ENST00000469543 STMN4Q9H169 189 aaPredicted RBP20.1■□□□□ 0.81
VIM-203ENST00000469543 SMARCAD1Q9H4L7 1026 aa20.1■□□□□ 0.81
VIM-203ENST00000469543 ADARB2Q9NS39 739 aaKnown RBP20.1■□□□□ 0.81
VIM-203ENST00000469543 PCDHGC3Q9UN70 934 aa20.1■□□□□ 0.81
VIM-203ENST00000469543 AKT3Q9Y243 479 aa20.1■□□□□ 0.81
VIM-203ENST00000469543 TCRBV7S3A2A0A539 114 aa20.1■□□□□ 0.81
VIM-203ENST00000469543 DNALI1O14645 258 aaPredicted RBP20.1■□□□□ 0.81
VIM-203ENST00000469543 C22orf31O95567 290 aa20.1■□□□□ 0.81
VIM-203ENST00000469543 TMEM62Q0P6H9 643 aa20.1■□□□□ 0.81
VIM-203ENST00000469543 CNPY4Q8N129 248 aa20.1■□□□□ 0.81
VIM-203ENST00000469543 SPOCK2Q92563 424 aa20.1■□□□□ 0.81
VIM-203ENST00000469543 RNF181Q9P0P0 153 aa20.1■□□□□ 0.81
VIM-203ENST00000469543 TPX2Q9ULW0 747 aaKnown RBP20.1■□□□□ 0.81
VIM-203ENST00000469543 CEP83Q9Y592 693 aa20.1■□□□□ 0.81
VIM-203ENST00000469543 POLR2BP30876 1174 aaKnown RBP20.09■□□□□ 0.81
VIM-203ENST00000469543 CETN2P41208 172 aa20.09■□□□□ 0.81
VIM-203ENST00000469543 VCPP55072 806 aaKnown RBP20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms