RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 GLUD2P49448 558 aa5.72□□□□□ -1.49
HMGB1-207ENST00000468384 STAT2P52630 851 aa5.72□□□□□ -1.49
HMGB1-207ENST00000468384 TIMM10P62072 90 aa5.72□□□□□ -1.49
HMGB1-207ENST00000468384 RPL6Q02878 288 aaKnown RBP5.72□□□□□ -1.49
HMGB1-207ENST00000468384 PPFIA1Q13136 1202 aa5.72□□□□□ -1.49
HMGB1-207ENST00000468384 STXBP2Q15833 593 aa5.72□□□□□ -1.49
HMGB1-207ENST00000468384 EIF2S3LQ2VIR3 472 aaKnown RBP5.72□□□□□ -1.49
HMGB1-207ENST00000468384 HLA-BQ31612 363 aa5.72□□□□□ -1.49
HMGB1-207ENST00000468384 MARCH8Q5T0T0 291 aa5.72□□□□□ -1.49
HMGB1-207ENST00000468384 LIN9Q5TKA1 542 aa5.72□□□□□ -1.49
HMGB1-207ENST00000468384 KDM7AQ6ZMT4 941 aa5.72□□□□□ -1.49
HMGB1-207ENST00000468384 TTC30AQ86WT1 665 aa5.72□□□□□ -1.49
HMGB1-207ENST00000468384 ECHDC2Q86YB7 292 aa5.72□□□□□ -1.49
HMGB1-207ENST00000468384 CERS3Q8IU89 383 aa5.72□□□□□ -1.49
HMGB1-207ENST00000468384 TGIF2LYQ8IUE0 185 aa5.72□□□□□ -1.49
HMGB1-207ENST00000468384 MIGA1Q8NAN2 632 aa5.72□□□□□ -1.49
HMGB1-207ENST00000468384 CPT1CQ8TCG5 803 aa5.72□□□□□ -1.49
HMGB1-207ENST00000468384 USP33Q8TEY7 942 aa5.72□□□□□ -1.49
HMGB1-207ENST00000468384 NUDT8Q8WV74 236 aa5.72□□□□□ -1.49
HMGB1-207ENST00000468384 ZBTB10Q96DT7 871 aa5.72□□□□□ -1.49
HMGB1-207ENST00000468384 IFT43Q96FT9 208 aa5.72□□□□□ -1.49
HMGB1-207ENST00000468384 ZSWIM3Q96MP5 696 aa5.72□□□□□ -1.49
HMGB1-207ENST00000468384 MBOAT7Q96N66 472 aa5.72□□□□□ -1.49
HMGB1-207ENST00000468384 FUCA2Q9BTY2 467 aa5.72□□□□□ -1.49
HMGB1-207ENST00000468384 PHACTR1Q9C0D0 580 aa5.72□□□□□ -1.49
HMGB1-207ENST00000468384 PNNQ9H307 717 aaKnown RBP5.72□□□□□ -1.49
HMGB1-207ENST00000468384 SUSD2Q9UGT4 822 aa5.72□□□□□ -1.49
HMGB1-207ENST00000468384 TUBD1Q9UJT1 453 aa5.72□□□□□ -1.49
HMGB1-207ENST00000468384 ZNF215Q9UL58 517 aaPredicted RBP5.72□□□□□ -1.49
HMGB1-207ENST00000468384 ATXN7L1Q9ULK2 861 aaPredicted RBP5.72□□□□□ -1.49
HMGB1-207ENST00000468384 RPH3AQ9Y2J0 694 aaPredicted RBP5.72□□□□□ -1.49
HMGB1-207ENST00000468384 PCDHB1Q9Y5F3 818 aa5.72□□□□□ -1.49
HMGB1-207ENST00000468384 ABCA4P78363 2273 aa5.71□□□□□ -1.5
HMGB1-207ENST00000468384 WDR27A2RRH5 827 aa5.71□□□□□ -1.5
HMGB1-207ENST00000468384 A6NHS1 94 aa5.71□□□□□ -1.5
HMGB1-207ENST00000468384 SPDYE3A6NKU9 549 aa5.71□□□□□ -1.5
HMGB1-207ENST00000468384 ENC1O14682 589 aa5.71□□□□□ -1.5
HMGB1-207ENST00000468384 TRDMT1O14717 391 aaKnown RBP5.71□□□□□ -1.5
HMGB1-207ENST00000468384 PRICKLE3O43900 615 aaPredicted RBP5.71□□□□□ -1.5
HMGB1-207ENST00000468384 WNT1P04628 370 aa5.71□□□□□ -1.5
HMGB1-207ENST00000468384 ICAM1P05362 532 aa5.71□□□□□ -1.5
HMGB1-207ENST00000468384 GNSP15586 552 aa5.71□□□□□ -1.5
HMGB1-207ENST00000468384 KLK2P20151 261 aa5.71□□□□□ -1.5
HMGB1-207ENST00000468384 CDK11BP21127 795 aaKnown RBP5.71□□□□□ -1.5
HMGB1-207ENST00000468384 ART1P52961 327 aa5.71□□□□□ -1.5
HMGB1-207ENST00000468384 KRT83P78385 493 aa5.71□□□□□ -1.5
HMGB1-207ENST00000468384 CENPCQ03188 943 aa5.71□□□□□ -1.5
HMGB1-207ENST00000468384 FCHO2Q0JRZ9 810 aa5.71□□□□□ -1.5
HMGB1-207ENST00000468384 IKQ13123 557 aaPredicted RBP5.71□□□□□ -1.5
HMGB1-207ENST00000468384 BYSLQ13895 437 aaKnown RBP5.71□□□□□ -1.5
HMGB1-207ENST00000468384 PDLIM3Q53GG5 364 aaPredicted RBP5.71□□□□□ -1.5
HMGB1-207ENST00000468384 ODR4Q5SWX8 454 aa5.71□□□□□ -1.5
HMGB1-207ENST00000468384 IL27RAQ6UWB1 636 aa5.71□□□□□ -1.5
HMGB1-207ENST00000468384 DPH6Q7L8W6 267 aa5.71□□□□□ -1.5
HMGB1-207ENST00000468384 FAM160B2Q86V87 743 aa5.71□□□□□ -1.5
HMGB1-207ENST00000468384 FBF1Q8TES7 1133 aa5.71□□□□□ -1.5
HMGB1-207ENST00000468384 CHURC1Q8WUH1 139 aa5.71□□□□□ -1.5
HMGB1-207ENST00000468384 CLEC4DQ8WXI8 215 aa5.71□□□□□ -1.5
HMGB1-207ENST00000468384 ARSGQ96EG1 525 aa5.71□□□□□ -1.5
HMGB1-207ENST00000468384 HEXIM2Q96MH2 286 aaKnown RBP5.71□□□□□ -1.5
HMGB1-207ENST00000468384 GBP3Q9H0R5 595 aa5.71□□□□□ -1.5
HMGB1-207ENST00000468384 TRPV4Q9HBA0 871 aa5.71□□□□□ -1.5
HMGB1-207ENST00000468384 ZNF71Q9NQZ8 489 aaPredicted RBP5.71□□□□□ -1.5
HMGB1-207ENST00000468384 DLL4Q9NR61 685 aa5.71□□□□□ -1.5
HMGB1-207ENST00000468384 ISY1Q9ULR0 285 aaKnown RBP5.71□□□□□ -1.5
HMGB1-207ENST00000468384 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.71□□□□□ -1.5
HMGB1-207ENST00000468384 EIF1AYO14602 144 aaKnown RBP5.7□□□□□ -1.5
HMGB1-207ENST00000468384 OPLAHO14841 1288 aa5.7□□□□□ -1.5
HMGB1-207ENST00000468384 SPRY1O43609 319 aaPredicted RBP5.7□□□□□ -1.5
HMGB1-207ENST00000468384 EIF3JO75822 258 aaKnown RBP5.7□□□□□ -1.5
HMGB1-207ENST00000468384 FOSL1P15407 271 aa5.7□□□□□ -1.5
HMGB1-207ENST00000468384 CYP7A1P22680 504 aa5.7□□□□□ -1.5
HMGB1-207ENST00000468384 PROZP22891 400 aa5.7□□□□□ -1.5
HMGB1-207ENST00000468384 PTGER4P35408 488 aa5.7□□□□□ -1.5
HMGB1-207ENST00000468384 ACADVLP49748 655 aa5.7□□□□□ -1.5
HMGB1-207ENST00000468384 DSG1Q02413 1049 aa5.7□□□□□ -1.5
HMGB1-207ENST00000468384 DNAJC3Q13217 504 aa5.7□□□□□ -1.5
HMGB1-207ENST00000468384 LBRQ14739 615 aaKnown RBP5.7□□□□□ -1.5
HMGB1-207ENST00000468384 MVPQ14764 893 aaKnown RBP5.7□□□□□ -1.5
HMGB1-207ENST00000468384 FBXO43Q4G163 708 aa5.7□□□□□ -1.5
HMGB1-207ENST00000468384 GIMAP6Q6P9H5 292 aa5.7□□□□□ -1.5
HMGB1-207ENST00000468384 KANSL1Q7Z3B3 1105 aa5.7□□□□□ -1.5
HMGB1-207ENST00000468384 XYLT1Q86Y38 959 aa5.7□□□□□ -1.5
HMGB1-207ENST00000468384 TREML1Q86YW5 311 aa5.7□□□□□ -1.5
HMGB1-207ENST00000468384 SLC41A1Q8IVJ1 513 aa5.7□□□□□ -1.5
HMGB1-207ENST00000468384 TRIML1Q8N9V2 468 aa5.7□□□□□ -1.5
HMGB1-207ENST00000468384 STAG1Q8WVM7 1258 aa5.7□□□□□ -1.5
HMGB1-207ENST00000468384 TMEM40Q8WWA1 233 aa5.7□□□□□ -1.5
HMGB1-207ENST00000468384 RFFLQ8WZ73 363 aa5.7□□□□□ -1.5
HMGB1-207ENST00000468384 NDRG1Q92597 394 aaKnown RBP5.7□□□□□ -1.5
HMGB1-207ENST00000468384 HDAC11Q96DB2 347 aa5.7□□□□□ -1.5
HMGB1-207ENST00000468384 RSPRY1Q96DX4 576 aa5.7□□□□□ -1.5
HMGB1-207ENST00000468384 ZFYVE19Q96K21 471 aa5.7□□□□□ -1.5
HMGB1-207ENST00000468384 POLR1BQ9H9Y6 1135 aa5.7□□□□□ -1.5
HMGB1-207ENST00000468384 MLXIPQ9HAP2 919 aa5.7□□□□□ -1.5
HMGB1-207ENST00000468384 AVENQ9NQS1 362 aaPredicted RBP5.7□□□□□ -1.5
HMGB1-207ENST00000468384 TBC1D13Q9NVG8 400 aa5.7□□□□□ -1.5
HMGB1-207ENST00000468384 SNTG2Q9NY99 539 aa5.7□□□□□ -1.5
HMGB1-207ENST00000468384 NYAP2Q9P242 653 aa5.7□□□□□ -1.5
HMGB1-207ENST00000468384 PNMA2Q9UL42 364 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms