RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 MAML1Q92585 1016 aa13.09□□□□□ -0.31
HDAC4-208ENST00000463007 ZNF75CPQ92670 426 aaPredicted RBP13.09□□□□□ -0.31
HDAC4-208ENST00000463007 DDX27Q96GQ7 796 aaKnown RBP13.09□□□□□ -0.31
HDAC4-208ENST00000463007 IWS1Q96ST2 819 aa13.09□□□□□ -0.31
HDAC4-208ENST00000463007 ANKFY1Q9P2R3 1169 aa13.09□□□□□ -0.31
HDAC4-208ENST00000463007 PCDHA10Q9Y5I2 948 aa13.09□□□□□ -0.31
HDAC4-208ENST00000463007 F8VP50 259 aa13.08□□□□□ -0.32
HDAC4-208ENST00000463007 GRIN3BO60391 1043 aa13.08□□□□□ -0.32
HDAC4-208ENST00000463007 SERPINB3P29508 390 aa13.08□□□□□ -0.32
HDAC4-208ENST00000463007 TSNAXIP1Q2TAA8 658 aa13.08□□□□□ -0.32
HDAC4-208ENST00000463007 ARHGEF16Q5VV41 709 aa13.08□□□□□ -0.32
HDAC4-208ENST00000463007 DCUN1D2Q6PH85 259 aa13.08□□□□□ -0.32
HDAC4-208ENST00000463007 RHPN2Q8IUC4 686 aa13.08□□□□□ -0.32
HDAC4-208ENST00000463007 TCP10LQ8TDR4 215 aa13.08□□□□□ -0.32
HDAC4-208ENST00000463007 TEKT4Q8WW24 435 aa13.08□□□□□ -0.32
HDAC4-208ENST00000463007 DDX1Q92499 740 aaKnown RBP13.08□□□□□ -0.32
HDAC4-208ENST00000463007 FNBP1Q96RU3 617 aa13.08□□□□□ -0.32
HDAC4-208ENST00000463007 KMT5AQ9NQR1 393 aa13.08□□□□□ -0.32
HDAC4-208ENST00000463007 ARL8BQ9NVJ2 186 aa13.08□□□□□ -0.32
HDAC4-208ENST00000463007 FYB2Q5VWT5 728 aa13.08□□□□□ -0.32
HDAC4-208ENST00000463007 AP1ARQ63HQ0 302 aa13.08□□□□□ -0.32
HDAC4-208ENST00000463007 ABHD15Q6UXT9 468 aa13.08□□□□□ -0.32
HDAC4-208ENST00000463007 PDCD7Q8N8D1 485 aaKnown RBP13.08□□□□□ -0.32
HDAC4-208ENST00000463007 TMC2Q8TDI7 906 aa13.08□□□□□ -0.32
HDAC4-208ENST00000463007 ARHGAP28Q9P2N2 729 aa13.08□□□□□ -0.32
HDAC4-208ENST00000463007 SPATA31C2B4DYI2 1134 aa13.08□□□□□ -0.32
HDAC4-208ENST00000463007 CCNB1P14635 433 aa13.08□□□□□ -0.32
HDAC4-208ENST00000463007 RASSF2P50749 326 aa13.08□□□□□ -0.32
HDAC4-208ENST00000463007 KDSRQ06136 332 aa13.08□□□□□ -0.32
HDAC4-208ENST00000463007 CYP4A22Q5TCH4 519 aa13.08□□□□□ -0.32
HDAC4-208ENST00000463007 CATSPERGQ6ZRH7 1159 aa13.08□□□□□ -0.32
HDAC4-208ENST00000463007 C3orf62Q6ZUJ4 267 aa13.08□□□□□ -0.32
HDAC4-208ENST00000463007 HIPK4Q8NE63 616 aa13.08□□□□□ -0.32
HDAC4-208ENST00000463007 ZNF526Q8TF50 670 aaPredicted RBP13.08□□□□□ -0.32
HDAC4-208ENST00000463007 CLPTM1LQ96KA5 538 aa13.08□□□□□ -0.32
HDAC4-208ENST00000463007 TTC1Q99614 292 aa13.08□□□□□ -0.32
HDAC4-208ENST00000463007 MIPEPQ99797 713 aa13.08□□□□□ -0.32
HDAC4-208ENST00000463007 NMRK1Q9NWW6 199 aa13.08□□□□□ -0.32
HDAC4-208ENST00000463007 AGTPBP1Q9UPW5 1226 aa13.08□□□□□ -0.32
HDAC4-208ENST00000463007 IVNS1ABPQ9Y6Y0 642 aa13.08□□□□□ -0.32
HDAC4-208ENST00000463007 NVLO15381 856 aaKnown RBP13.07□□□□□ -0.32
HDAC4-208ENST00000463007 DCTN3O75935 186 aa13.07□□□□□ -0.32
HDAC4-208ENST00000463007 LUC7L3O95232 432 aaKnown RBP13.07□□□□□ -0.32
HDAC4-208ENST00000463007 GCAP28676 217 aa13.07□□□□□ -0.32
HDAC4-208ENST00000463007 GCLCP48506 637 aaPredicted RBP13.07□□□□□ -0.32
HDAC4-208ENST00000463007 IRX1P78414 480 aaPredicted RBP13.07□□□□□ -0.32
HDAC4-208ENST00000463007 BRDTQ58F21 947 aaPredicted RBP13.07□□□□□ -0.32
HDAC4-208ENST00000463007 SNX30Q5VWJ9 437 aa13.07□□□□□ -0.32
HDAC4-208ENST00000463007 DCAF15Q66K64 600 aa13.07□□□□□ -0.32
HDAC4-208ENST00000463007 SNRNP48Q6IEG0 339 aaKnown RBP13.07□□□□□ -0.32
HDAC4-208ENST00000463007 CCDC60Q8IWA6 550 aaPredicted RBP13.07□□□□□ -0.32
HDAC4-208ENST00000463007 CTAGE3PQ8IX95 158 aa13.07□□□□□ -0.32
HDAC4-208ENST00000463007 PYROXD1Q8WU10 500 aa13.07□□□□□ -0.32
HDAC4-208ENST00000463007 PTPRN2Q92932 1015 aa13.07□□□□□ -0.32
HDAC4-208ENST00000463007 STMN2Q93045 179 aa13.07□□□□□ -0.32
HDAC4-208ENST00000463007 KLRG1Q96E93 195 aa13.07□□□□□ -0.32
HDAC4-208ENST00000463007 ZNF668Q96K58 619 aaPredicted RBP13.07□□□□□ -0.32
HDAC4-208ENST00000463007 MCEEQ96PE7 176 aa13.07□□□□□ -0.32
HDAC4-208ENST00000463007 SHCBP1LQ9BZQ2 653 aa13.07□□□□□ -0.32
HDAC4-208ENST00000463007 ZNF395Q9H8N7 513 aaPredicted RBP13.07□□□□□ -0.32
HDAC4-208ENST00000463007 CORO1CQ9ULV4 474 aaPredicted RBP13.07□□□□□ -0.32
HDAC4-208ENST00000463007 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.07□□□□□ -0.32
HDAC4-208ENST00000463007 MYPNQ86TC9 1320 aa13.07□□□□□ -0.32
HDAC4-208ENST00000463007 EDF1O60869 148 aaKnown RBP13.07□□□□□ -0.32
HDAC4-208ENST00000463007 ATG7O95352 703 aa13.07□□□□□ -0.32
HDAC4-208ENST00000463007 GTF2H1P32780 548 aa13.07□□□□□ -0.32
HDAC4-208ENST00000463007 BASP1P80723 227 aaKnown RBP13.07□□□□□ -0.32
HDAC4-208ENST00000463007 KLC1Q07866 573 aa13.07□□□□□ -0.32
HDAC4-208ENST00000463007 NFX1Q12986 1120 aaKnown RBP13.07□□□□□ -0.32
HDAC4-208ENST00000463007 GRIK3Q13003 919 aa13.07□□□□□ -0.32
HDAC4-208ENST00000463007 WDR44Q5JSH3 913 aa13.07□□□□□ -0.32
HDAC4-208ENST00000463007 SCARA5Q6ZMJ2 495 aa13.07□□□□□ -0.32
HDAC4-208ENST00000463007 RHOT1Q8IXI2 618 aa13.07□□□□□ -0.32
HDAC4-208ENST00000463007 PALM2Q8IXS6 379 aa13.07□□□□□ -0.32
HDAC4-208ENST00000463007 AGGF1Q8N302 714 aaeCLIP13.07□□□□□ -0.32
HDAC4-208ENST00000463007 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.07□□□□□ -0.32
HDAC4-208ENST00000463007 WDR60Q8WVS4 1066 aa13.07□□□□□ -0.32
HDAC4-208ENST00000463007 LRMDAQ9H2I8 198 aa13.07□□□□□ -0.32
HDAC4-208ENST00000463007 TMEM8AQ9HCN3 771 aa13.07□□□□□ -0.32
HDAC4-208ENST00000463007 PCSK1NQ9UHG2 260 aa13.07□□□□□ -0.32
HDAC4-208ENST00000463007 FZD1Q9UP38 647 aa13.07□□□□□ -0.32
HDAC4-208ENST00000463007 STYXL1Q9Y6J8 313 aa13.07□□□□□ -0.32
HDAC4-208ENST00000463007 WASF2Q9Y6W5 498 aa13.07□□□□□ -0.32
HDAC4-208ENST00000463007 SBF1O95248 1867 aa13.07□□□□□ -0.32
HDAC4-208ENST00000463007 UMODL1Q5DID0 1318 aa13.06□□□□□ -0.32
HDAC4-208ENST00000463007 POLR2AP24928 1970 aaKnown RBP13.06□□□□□ -0.32
HDAC4-208ENST00000463007 PIK3R2O00459 728 aa13.06□□□□□ -0.32
HDAC4-208ENST00000463007 MARK3P27448 753 aa13.06□□□□□ -0.32
HDAC4-208ENST00000463007 WNT7BP56706 349 aa13.06□□□□□ -0.32
HDAC4-208ENST00000463007 MKRN3Q13064 507 aaKnown RBP13.06□□□□□ -0.32
HDAC4-208ENST00000463007 DMP1Q13316 513 aaPredicted RBP13.06□□□□□ -0.32
HDAC4-208ENST00000463007 THOC5Q13769 683 aaKnown RBP13.06□□□□□ -0.32
HDAC4-208ENST00000463007 CDCA2Q69YH5 1023 aaPredicted RBP13.06□□□□□ -0.32
HDAC4-208ENST00000463007 SCG3Q8WXD2 468 aaKnown RBP13.06□□□□□ -0.32
HDAC4-208ENST00000463007 ZBTB45Q96K62 511 aaPredicted RBP13.06□□□□□ -0.32
HDAC4-208ENST00000463007 CEP170P1Q96L14 293 aa13.06□□□□□ -0.32
HDAC4-208ENST00000463007 FAM161BQ96MY7 647 aa13.06□□□□□ -0.32
HDAC4-208ENST00000463007 FAM111AQ96PZ2 611 aa13.06□□□□□ -0.32
HDAC4-208ENST00000463007 PAPOLBQ9NRJ5 636 aaKnown RBP13.06□□□□□ -0.32
HDAC4-208ENST00000463007 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.06□□□□□ -0.328e-6■■■□□ 14.7
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms