RNA–Protein interactions for RNA: ENST00000463004.5

RBM39-223, Transcript of RNA binding motif protein 39, human

TSL 5

Gene RBM39, Length 4,580 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-223	ENST00000463004	KLC3	Q6P597	504 aa		12.34	□□□□□ -0.43
RBM39-223	ENST00000463004	NUDT18	Q6ZVK8	323 aa		12.34	□□□□□ -0.43
RBM39-223	ENST00000463004	ATP6V0D2	Q8N8Y2	350 aa		12.34	□□□□□ -0.43
RBM39-223	ENST00000463004	CPB2	Q96IY4	423 aa		12.34	□□□□□ -0.43
RBM39-223	ENST00000463004	LRRC1	Q9BTT6	524 aa		12.34	□□□□□ -0.43
RBM39-223	ENST00000463004	FSD1L	Q9BXM9	530 aa		12.34	□□□□□ -0.43
RBM39-223	ENST00000463004	CDT1	Q9H211	546 aa		12.34	□□□□□ -0.43
RBM39-223	ENST00000463004	FAM49B	Q9NUQ9	324 aa		12.34	□□□□□ -0.43
RBM39-223	ENST00000463004	MORF4L1	Q9UBU8	362 aa		12.34	□□□□□ -0.43
RBM39-223	ENST00000463004	PCDHA2	Q9Y5H9	948 aa		12.34	□□□□□ -0.43
RBM39-223	ENST00000463004	THSD7A	Q9UPZ6	1657 aa		12.34	□□□□□ -0.43
RBM39-223	ENST00000463004	ATP2C2	O75185	946 aa		12.33	□□□□□ -0.43
RBM39-223	ENST00000463004	MMP3	P08254	477 aa		12.33	□□□□□ -0.43
RBM39-223	ENST00000463004	PTGIS	Q16647	500 aa		12.33	□□□□□ -0.43
RBM39-223	ENST00000463004	RNF219	Q5W0B1	726 aa	Predicted RBP	12.33	□□□□□ -0.43
RBM39-223	ENST00000463004	JAML	Q86YT9	394 aa		12.33	□□□□□ -0.43
RBM39-223	ENST00000463004	CCNJL	Q8IV13	435 aa		12.33	□□□□□ -0.43
RBM39-223	ENST00000463004	ALKBH8	Q96BT7	664 aa	Known RBP	12.33	□□□□□ -0.43
RBM39-223	ENST00000463004	BRD8	Q9H0E9	1235 aa		12.33	□□□□□ -0.43
RBM39-223	ENST00000463004	METTL5	Q9NRN9	209 aa	Known RBP	12.33	□□□□□ -0.43
RBM39-223	ENST00000463004	NSMCE4A	Q9NXX6	385 aa		12.33	□□□□□ -0.43
RBM39-223	ENST00000463004	SNTG2	Q9NY99	539 aa		12.33	□□□□□ -0.43
RBM39-223	ENST00000463004	GIT1	Q9Y2X7	761 aa		12.33	□□□□□ -0.43
RBM39-223	ENST00000463004	SOWAHB	A6NEL2	793 aa		12.33	□□□□□ -0.44
RBM39-223	ENST00000463004	EEF2K	O00418	725 aa	Known RBP	12.33	□□□□□ -0.44
RBM39-223	ENST00000463004	CA12	O43570	354 aa		12.33	□□□□□ -0.44
RBM39-223	ENST00000463004	AP1G2	O75843	785 aa		12.33	□□□□□ -0.44
RBM39-223	ENST00000463004	DRP2	Q13474	957 aa		12.33	□□□□□ -0.44
RBM39-223	ENST00000463004	SPARCL1	Q14515	664 aa		12.33	□□□□□ -0.44
RBM39-223	ENST00000463004	LRRC38	Q5VT99	294 aa		12.33	□□□□□ -0.44
RBM39-223	ENST00000463004	TSHZ1	Q6ZSZ6	1077 aa		12.33	□□□□□ -0.44
RBM39-223	ENST00000463004	CCDC197	Q8NCU1	140 aa		12.33	□□□□□ -0.44
RBM39-223	ENST00000463004	LENG9	Q96B70	501 aa		12.33	□□□□□ -0.44
RBM39-223	ENST00000463004	MAML3	Q96JK9	1138 aa		12.33	□□□□□ -0.44
RBM39-223	ENST00000463004	SCYL1	Q96KG9	808 aa		12.33	□□□□□ -0.44
RBM39-223	ENST00000463004	RBPJL	Q9UBG7	517 aa		12.33	□□□□□ -0.44
RBM39-223	ENST00000463004	TRIM10	Q9UDY6	481 aa		12.33	□□□□□ -0.44
RBM39-223	ENST00000463004	NOVA2	Q9UNW9	492 aa	Known RBP	12.33	□□□□□ -0.44
RBM39-223	ENST00000463004	PCDHGC5	Q9Y5F6	944 aa		12.33	□□□□□ -0.44
RBM39-223	ENST00000463004	NCAM2	O15394	837 aa		12.33	□□□□□ -0.44
RBM39-223	ENST00000463004	COIL	P38432	576 aa	Predicted RBP	12.33	□□□□□ -0.44
RBM39-223	ENST00000463004	PPP3CA	Q08209	521 aa		12.33	□□□□□ -0.44
RBM39-223	ENST00000463004	CNGA2	Q16280	664 aa		12.33	□□□□□ -0.44
RBM39-223	ENST00000463004	UGCG	Q16739	394 aa		12.33	□□□□□ -0.44
RBM39-223	ENST00000463004	C1orf54	Q8WWF1	131 aa		12.33	□□□□□ -0.44
RBM39-223	ENST00000463004	PCDHB8	Q9UN66	801 aa		12.33	□□□□□ -0.44
RBM39-223	ENST00000463004	FAN1	Q9Y2M0	1017 aa		12.33	□□□□□ -0.44
RBM39-223	ENST00000463004	MYH7	P12883	1935 aa		12.33	□□□□□ -0.44
RBM39-223	ENST00000463004	FDFT1	P37268	417 aa		12.33	□□□□□ -0.44
RBM39-223	ENST00000463004	ALDH1A3	P47895	512 aa		12.33	□□□□□ -0.44
RBM39-223	ENST00000463004	SOX10	P56693	466 aa		12.33	□□□□□ -0.44
RBM39-223	ENST00000463004	CBWD6	Q4V339	395 aa		12.33	□□□□□ -0.44
RBM39-223	ENST00000463004	CBWD3	Q5JTY5	395 aa		12.33	□□□□□ -0.44
RBM39-223	ENST00000463004	CBWD5	Q5RIA9	395 aa		12.33	□□□□□ -0.44
RBM39-223	ENST00000463004	UHMK1	Q8TAS1	419 aa	Known RBP	12.33	□□□□□ -0.44
RBM39-223	ENST00000463004	POP1	Q99575	1024 aa	Known RBP	12.33	□□□□□ -0.44
RBM39-223	ENST00000463004	CNTNAP2	Q9UHC6	1331 aa		12.33	□□□□□ -0.44
RBM39-223	ENST00000463004	DDX3X	O00571	662 aa	Known RBP eCLIP	12.32	□□□□□ -0.44	1e-17	■□□□□ 11
RBM39-223	ENST00000463004	DPYSL4	O14531	572 aa		12.32	□□□□□ -0.44
RBM39-223	ENST00000463004	ALDH2	P05091	517 aa		12.32	□□□□□ -0.44
RBM39-223	ENST00000463004	PPM1F	P49593	454 aa	Predicted RBP	12.32	□□□□□ -0.44
RBM39-223	ENST00000463004	SERPINB9	P50453	376 aa		12.32	□□□□□ -0.44
RBM39-223	ENST00000463004	ZSCAN26	Q16670	478 aa		12.32	□□□□□ -0.44
RBM39-223	ENST00000463004	TFDP3	Q5H9I0	405 aa		12.32	□□□□□ -0.44
RBM39-223	ENST00000463004	MAP3K21	Q5TCX8	1036 aa		12.32	□□□□□ -0.44
RBM39-223	ENST00000463004	BAP1	Q92560	729 aa		12.32	□□□□□ -0.44
RBM39-223	ENST00000463004	TATDN2	Q93075	761 aa		12.32	□□□□□ -0.44
RBM39-223	ENST00000463004	IFT43	Q96FT9	208 aa		12.32	□□□□□ -0.44
RBM39-223	ENST00000463004	HSFY1	Q96LI6	401 aa		12.32	□□□□□ -0.44
RBM39-223	ENST00000463004	CYTH2	Q99418	400 aa		12.32	□□□□□ -0.44
RBM39-223	ENST00000463004	PDGFD	Q9GZP0	370 aa	Predicted RBP	12.32	□□□□□ -0.44
RBM39-223	ENST00000463004	ELOVL4	Q9GZR5	314 aa		12.32	□□□□□ -0.44
RBM39-223	ENST00000463004	LACRT	Q9GZZ8	138 aa		12.32	□□□□□ -0.44
RBM39-223	ENST00000463004	FBXO44	Q9H4M3	255 aa		12.32	□□□□□ -0.44
RBM39-223	ENST00000463004	KPNA7	A9QM74	516 aa		12.32	□□□□□ -0.44
RBM39-223	ENST00000463004	AGT	P01019	485 aa		12.32	□□□□□ -0.44
RBM39-223	ENST00000463004	ATP1A2	P50993	1020 aa		12.32	□□□□□ -0.44
RBM39-223	ENST00000463004	E2F5	Q15329	346 aa		12.32	□□□□□ -0.44
RBM39-223	ENST00000463004	CCNG2	Q16589	344 aa		12.32	□□□□□ -0.44
RBM39-223	ENST00000463004	UGP2	Q16851	508 aa		12.32	□□□□□ -0.44
RBM39-223	ENST00000463004	CAPN12	Q6ZSI9	719 aa		12.32	□□□□□ -0.44
RBM39-223	ENST00000463004	SLC47A2	Q86VL8	602 aa		12.32	□□□□□ -0.44
RBM39-223	ENST00000463004	CDR2L	Q86X02	465 aa	Predicted RBP	12.32	□□□□□ -0.44
RBM39-223	ENST00000463004	HOMEZ	Q8IX15	550 aa		12.32	□□□□□ -0.44
RBM39-223	ENST00000463004	RAB3IP	Q96QF0	476 aa	Predicted RBP	12.32	□□□□□ -0.44
RBM39-223	ENST00000463004	SYT15	Q9BQS2	421 aa		12.32	□□□□□ -0.44
RBM39-223	ENST00000463004	XAB2	Q9HCS7	855 aa	Known RBP	12.32	□□□□□ -0.44
RBM39-223	ENST00000463004	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	12.32	□□□□□ -0.44
RBM39-223	ENST00000463004	FARP1	Q9Y4F1	1045 aa	Predicted RBP	12.32	□□□□□ -0.44
RBM39-223	ENST00000463004	C3orf70	A6NLC5	250 aa	Predicted RBP	12.32	□□□□□ -0.44
RBM39-223	ENST00000463004	MYC	P01106	439 aa	Predicted RBP	12.32	□□□□□ -0.44
RBM39-223	ENST00000463004	PIGR	P01833	764 aa		12.32	□□□□□ -0.44
RBM39-223	ENST00000463004	RRM1	P23921	792 aa		12.32	□□□□□ -0.44
RBM39-223	ENST00000463004	MAPK7	Q13164	816 aa		12.32	□□□□□ -0.44
RBM39-223	ENST00000463004	EPC2	Q52LR7	807 aa		12.32	□□□□□ -0.44
RBM39-223	ENST00000463004	JADE1	Q6IE81	842 aa		12.32	□□□□□ -0.44
RBM39-223	ENST00000463004	RAPH1	Q70E73	1250 aa		12.32	□□□□□ -0.44
RBM39-223	ENST00000463004	ACOT1	Q86TX2	421 aa		12.32	□□□□□ -0.44
RBM39-223	ENST00000463004	ARHGEF19	Q8IW93	802 aa		12.32	□□□□□ -0.44
RBM39-223	ENST00000463004	C3orf20	Q8ND61	904 aa		12.32	□□□□□ -0.44

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