RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	AGO2	Q9UKV8	859 aa	Known RBP	12.05	□□□□□ -0.48
PTPN7-204	ENST00000462815	TCHH	Q07283	1943 aa		12.05	□□□□□ -0.48
PTPN7-204	ENST00000462815	SOBP	A7XYQ1	873 aa		12.04	□□□□□ -0.48
PTPN7-204	ENST00000462815	KPNA7	A9QM74	516 aa		12.04	□□□□□ -0.48
PTPN7-204	ENST00000462815	EGF	P01133	1207 aa		12.04	□□□□□ -0.48
PTPN7-204	ENST00000462815	ARSA	P15289	507 aa		12.04	□□□□□ -0.48
PTPN7-204	ENST00000462815	KCNA4	P22459	653 aa		12.04	□□□□□ -0.48
PTPN7-204	ENST00000462815	PML	P29590	882 aa		12.04	□□□□□ -0.48
PTPN7-204	ENST00000462815	LONP1	P36776	959 aa	Known RBP	12.04	□□□□□ -0.48
PTPN7-204	ENST00000462815	ZNF268	Q14587	947 aa	Predicted RBP	12.04	□□□□□ -0.48
PTPN7-204	ENST00000462815	VEPH1	Q14D04	833 aa		12.04	□□□□□ -0.48
PTPN7-204	ENST00000462815	RABEP1	Q15276	862 aa		12.04	□□□□□ -0.48
PTPN7-204	ENST00000462815	TXNDC8	Q6A555	127 aa		12.04	□□□□□ -0.48
PTPN7-204	ENST00000462815	ADAL	Q6DHV7	355 aa		12.04	□□□□□ -0.48
PTPN7-204	ENST00000462815	KBTBD6	Q86V97	674 aa		12.04	□□□□□ -0.48
PTPN7-204	ENST00000462815	PDCL2	Q8N4E4	241 aa		12.04	□□□□□ -0.48
PTPN7-204	ENST00000462815	MAB21L3	Q8N8X9	362 aa		12.04	□□□□□ -0.48
PTPN7-204	ENST00000462815	C1orf127	Q8N9H9	656 aa		12.04	□□□□□ -0.48
PTPN7-204	ENST00000462815	LARP4B	Q92615	738 aa	Known RBP	12.04	□□□□□ -0.48
PTPN7-204	ENST00000462815	CALML4	Q96GE6	196 aa		12.04	□□□□□ -0.48
PTPN7-204	ENST00000462815	LOXL4	Q96JB6	756 aa		12.04	□□□□□ -0.48
PTPN7-204	ENST00000462815	CHAMP1	Q96JM3	812 aa		12.04	□□□□□ -0.48
PTPN7-204	ENST00000462815	ZC3H10	Q96K80	434 aa	Known RBP	12.04	□□□□□ -0.48
PTPN7-204	ENST00000462815	FAM84A	Q96KN4	292 aa		12.04	□□□□□ -0.48
PTPN7-204	ENST00000462815	SLC22A12	Q96S37	553 aa		12.04	□□□□□ -0.48
PTPN7-204	ENST00000462815	EBF3	Q9H4W6	596 aa		12.04	□□□□□ -0.48
PTPN7-204	ENST00000462815	ABI2	Q9NYB9	513 aa	Predicted RBP	12.04	□□□□□ -0.48
PTPN7-204	ENST00000462815	ZMYM5	Q9UJ78	669 aa		12.04	□□□□□ -0.48
PTPN7-204	ENST00000462815	L1RE1	Q9UN81	338 aa		12.04	□□□□□ -0.48
PTPN7-204	ENST00000462815	AKAP13	Q12802	2813 aa		12.04	□□□□□ -0.48
PTPN7-204	ENST00000462815	ATG2B	Q96BY7	2078 aa		12.03	□□□□□ -0.48
PTPN7-204	ENST00000462815	FOXD2	O60548	495 aa	Predicted RBP	12.03	□□□□□ -0.48
PTPN7-204	ENST00000462815	RNF40	O75150	1001 aa		12.03	□□□□□ -0.48
PTPN7-204	ENST00000462815	AKAP3	O75969	853 aa		12.03	□□□□□ -0.48
PTPN7-204	ENST00000462815	NOL4	O94818	638 aa		12.03	□□□□□ -0.48
PTPN7-204	ENST00000462815	ZNF806	P0C7X5	589 aa		12.03	□□□□□ -0.48
PTPN7-204	ENST00000462815	CHRM1	P11229	460 aa	Predicted RBP	12.03	□□□□□ -0.48
PTPN7-204	ENST00000462815	DDX6	P26196	483 aa	Known RBP eCLIP	12.03	□□□□□ -0.48
PTPN7-204	ENST00000462815	ABCD1	P33897	745 aa		12.03	□□□□□ -0.48
PTPN7-204	ENST00000462815	DDIT3	P35638	169 aa		12.03	□□□□□ -0.48
PTPN7-204	ENST00000462815	UBA7	P41226	1012 aa		12.03	□□□□□ -0.48
PTPN7-204	ENST00000462815	USP4	Q13107	963 aa		12.03	□□□□□ -0.48
PTPN7-204	ENST00000462815	PTPA	Q15257	358 aa		12.03	□□□□□ -0.48
PTPN7-204	ENST00000462815	ZNF77	Q15935	545 aa		12.03	□□□□□ -0.48
PTPN7-204	ENST00000462815	CCDC6	Q16204	474 aa		12.03	□□□□□ -0.48
PTPN7-204	ENST00000462815	SDHAF4	Q5VUM1	108 aa		12.03	□□□□□ -0.48
PTPN7-204	ENST00000462815	LIMS2	Q7Z4I7	341 aa		12.03	□□□□□ -0.48
PTPN7-204	ENST00000462815	MON1A	Q86VX9	555 aa		12.03	□□□□□ -0.48
PTPN7-204	ENST00000462815	OSTM1	Q86WC4	334 aa		12.03	□□□□□ -0.48
PTPN7-204	ENST00000462815	SFR1	Q86XK3	245 aa		12.03	□□□□□ -0.48
PTPN7-204	ENST00000462815	FAM200A	Q8TCP9	573 aa		12.03	□□□□□ -0.48
PTPN7-204	ENST00000462815	HVCN1	Q96D96	273 aa		12.03	□□□□□ -0.48
PTPN7-204	ENST00000462815	DNAJC19	Q96DA6	116 aa		12.03	□□□□□ -0.48
PTPN7-204	ENST00000462815	TRMT2B	Q96GJ1	504 aa	Known RBP	12.03	□□□□□ -0.48
PTPN7-204	ENST00000462815	MYRFL	Q96LU7	910 aa		12.03	□□□□□ -0.48
PTPN7-204	ENST00000462815	FGFBP2	Q9BYJ0	223 aa		12.03	□□□□□ -0.48
PTPN7-204	ENST00000462815	ARRDC1-AS1	Q9H2J1	176 aa		12.03	□□□□□ -0.48
PTPN7-204	ENST00000462815	KIF9	Q9HAQ2	790 aa		12.03	□□□□□ -0.48
PTPN7-204	ENST00000462815	TDP1	Q9NUW8	608 aa		12.03	□□□□□ -0.48
PTPN7-204	ENST00000462815	KIF3A	Q9Y496	699 aa		12.03	□□□□□ -0.48
PTPN7-204	ENST00000462815	PCDHB5	Q9Y5E4	795 aa		12.03	□□□□□ -0.48
PTPN7-204	ENST00000462815	CNOT1	A5YKK6	2376 aa	Known RBP	12.03	□□□□□ -0.48
PTPN7-204	ENST00000462815	ANAPC1	Q9H1A4	1944 aa		12.02	□□□□□ -0.49
PTPN7-204	ENST00000462815	AXIN1	O15169	862 aa		12.02	□□□□□ -0.49
PTPN7-204	ENST00000462815	HCRT	O43612	131 aa		12.02	□□□□□ -0.49
PTPN7-204	ENST00000462815	TBCA	O75347	108 aa	Known RBP	12.02	□□□□□ -0.49
PTPN7-204	ENST00000462815	RPP40	O75818	363 aa	Known RBP	12.02	□□□□□ -0.49
PTPN7-204	ENST00000462815	IL18RAP	O95256	599 aa		12.02	□□□□□ -0.49
PTPN7-204	ENST00000462815	GJA4	P35212	333 aa		12.02	□□□□□ -0.49
PTPN7-204	ENST00000462815	CASP5	P51878	434 aa		12.02	□□□□□ -0.49
PTPN7-204	ENST00000462815	ZXDB	P98169	803 aa		12.02	□□□□□ -0.49
PTPN7-204	ENST00000462815	SF3A1	Q15459	793 aa	Known RBP	12.02	□□□□□ -0.49
PTPN7-204	ENST00000462815	SV2C	Q496J9	727 aa		12.02	□□□□□ -0.49
PTPN7-204	ENST00000462815	SLFN12L	Q6IEE8	588 aa		12.02	□□□□□ -0.49
PTPN7-204	ENST00000462815	CEP68	Q76N32	757 aa		12.02	□□□□□ -0.49
PTPN7-204	ENST00000462815	CACNA2D4	Q7Z3S7	1137 aa		12.02	□□□□□ -0.49
PTPN7-204	ENST00000462815	METTL23	Q86XA0	190 aa		12.02	□□□□□ -0.49
PTPN7-204	ENST00000462815	NT5DC4	Q86YG4	428 aa		12.02	□□□□□ -0.49
PTPN7-204	ENST00000462815	BRSK2	Q8IWQ3	736 aa		12.02	□□□□□ -0.49
PTPN7-204	ENST00000462815	DCP1B	Q8IZD4	617 aa	Known RBP	12.02	□□□□□ -0.49
PTPN7-204	ENST00000462815	THEM5	Q8N1Q8	247 aa		12.02	□□□□□ -0.49
PTPN7-204	ENST00000462815	EPSTI1	Q96J88	318 aa		12.02	□□□□□ -0.49
PTPN7-204	ENST00000462815	GCNA	Q96QF7	691 aa		12.02	□□□□□ -0.49
PTPN7-204	ENST00000462815	ACBD6	Q9BR61	282 aa		12.02	□□□□□ -0.49
PTPN7-204	ENST00000462815	PI4K2A	Q9BTU6	479 aa		12.02	□□□□□ -0.49
PTPN7-204	ENST00000462815	SMOC1	Q9H4F8	434 aa		12.02	□□□□□ -0.49
PTPN7-204	ENST00000462815	ABCB6	Q9NP58	842 aa		12.02	□□□□□ -0.49
PTPN7-204	ENST00000462815	THG1L	Q9NWX6	298 aa	Known RBP	12.02	□□□□□ -0.49
PTPN7-204	ENST00000462815	GCNT4	Q9P109	453 aa		12.02	□□□□□ -0.49
PTPN7-204	ENST00000462815	SIX4	Q9UIU6	781 aa		12.02	□□□□□ -0.49
PTPN7-204	ENST00000462815	HELZ	P42694	1942 aa	Known RBP	12.01	□□□□□ -0.49
PTPN7-204	ENST00000462815	CACNA1G	O43497	2377 aa		12.01	□□□□□ -0.49
PTPN7-204	ENST00000462815	FREM2	Q5SZK8	3169 aa		12.01	□□□□□ -0.49
PTPN7-204	ENST00000462815	SPAG17	Q6Q759	2223 aa		12.01	□□□□□ -0.49
PTPN7-204	ENST00000462815	FRMD3	A2A2Y4	597 aa		12.01	□□□□□ -0.49
PTPN7-204	ENST00000462815	ANTXRL	A6NF34	631 aa		12.01	□□□□□ -0.49
PTPN7-204	ENST00000462815	MYMK	A6NI61	221 aa		12.01	□□□□□ -0.49
PTPN7-204	ENST00000462815	GABRD	O14764	452 aa		12.01	□□□□□ -0.49
PTPN7-204	ENST00000462815	CSH1	P0DML2	217 aa		12.01	□□□□□ -0.49
PTPN7-204	ENST00000462815	CSH2	P0DML3	217 aa		12.01	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms