RNA–Protein interactions for RNA: ENST00000462730.5

HDAC6-213, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 1,999 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-213ENST00000462730 CCDC26Q8TAB7 109 aa15.33■□□□□ 0.04
HDAC6-213ENST00000462730 HEXIM2Q96MH2 286 aaKnown RBP15.33■□□□□ 0.04
HDAC6-213ENST00000462730 OSBPL7Q9BZF2 842 aa15.33■□□□□ 0.04
HDAC6-213ENST00000462730 AGO3Q9H9G7 860 aaKnown RBP15.33■□□□□ 0.04
HDAC6-213ENST00000462730 STARD7Q9NQZ5 370 aa15.33■□□□□ 0.04
HDAC6-213ENST00000462730 AMACRQ9UHK6 382 aa15.33■□□□□ 0.04
HDAC6-213ENST00000462730 MICAL2O94851 1124 aa15.32■□□□□ 0.04
HDAC6-213ENST00000462730 GHRP10912 638 aa15.32■□□□□ 0.04
HDAC6-213ENST00000462730 TRIM71Q2Q1W2 868 aaKnown RBP15.32■□□□□ 0.04
HDAC6-213ENST00000462730 PTPN20Q4JDL3 420 aa15.32■□□□□ 0.04
HDAC6-213ENST00000462730 DAB2IPQ5VWQ8 1189 aa15.32■□□□□ 0.04
HDAC6-213ENST00000462730 SLC13A5Q86YT5 568 aaPredicted RBP15.32■□□□□ 0.04
HDAC6-213ENST00000462730 TTC39CQ8N584 583 aa15.32■□□□□ 0.04
HDAC6-213ENST00000462730 ARRDC4Q8NCT1 418 aa15.32■□□□□ 0.04
HDAC6-213ENST00000462730 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.32■□□□□ 0.04
HDAC6-213ENST00000462730 MCEEQ96PE7 176 aa15.32■□□□□ 0.04
HDAC6-213ENST00000462730 CYTH4Q9UIA0 394 aa15.32■□□□□ 0.04
HDAC6-213ENST00000462730 NFU1Q9UMS0 254 aa15.32■□□□□ 0.04
HDAC6-213ENST00000462730 UBQLN1Q9UMX0 589 aaKnown RBP15.32■□□□□ 0.04
HDAC6-213ENST00000462730 USTQ9Y2C2 406 aa15.32■□□□□ 0.04
HDAC6-213ENST00000462730 TCRBV5S1A1TA0A578 114 aa15.31■□□□□ 0.04
HDAC6-213ENST00000462730 TMEM191CA6NGB0 347 aa15.31■□□□□ 0.04
HDAC6-213ENST00000462730 M0QYV0 167 aa15.31■□□□□ 0.04
HDAC6-213ENST00000462730 MYO1CO00159 1063 aa15.31■□□□□ 0.04
HDAC6-213ENST00000462730 GPR182O15218 404 aa15.31■□□□□ 0.04
HDAC6-213ENST00000462730 TTI1O43156 1089 aa15.31■□□□□ 0.04
HDAC6-213ENST00000462730 VDRP11473 427 aa15.31■□□□□ 0.04
HDAC6-213ENST00000462730 MAN1A1P33908 653 aa15.31■□□□□ 0.04
HDAC6-213ENST00000462730 RPL7AP62424 266 aaKnown RBP15.31■□□□□ 0.04
HDAC6-213ENST00000462730 PPP2R5EQ16537 467 aa15.31■□□□□ 0.04
HDAC6-213ENST00000462730 SGO2Q562F6 1265 aa15.31■□□□□ 0.04
HDAC6-213ENST00000462730 FBXO47Q5MNV8 452 aa15.31■□□□□ 0.04
HDAC6-213ENST00000462730 C9orf57Q5W0N0 161 aa15.31■□□□□ 0.04
HDAC6-213ENST00000462730 DPH6Q7L8W6 267 aa15.31■□□□□ 0.04
HDAC6-213ENST00000462730 MAATS1Q7Z4T9 603 aa15.31■□□□□ 0.04
HDAC6-213ENST00000462730 SRLQ86TD4 932 aa15.31■□□□□ 0.04
HDAC6-213ENST00000462730 LRRC52Q8N7C0 313 aa15.31■□□□□ 0.04
HDAC6-213ENST00000462730 UNC93B1Q9H1C4 597 aa15.31■□□□□ 0.04
HDAC6-213ENST00000462730 FAM204AQ9H8W3 233 aa15.31■□□□□ 0.04
HDAC6-213ENST00000462730 FAM105AQ9NUU6 356 aa15.31■□□□□ 0.04
HDAC6-213ENST00000462730 IP6K2Q9UHH9 426 aa15.31■□□□□ 0.04
HDAC6-213ENST00000462730 LCMT1Q9UIC8 334 aa15.31■□□□□ 0.04
HDAC6-213ENST00000462730 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.31■□□□□ 0.04
HDAC6-213ENST00000462730 SNX9Q9Y5X1 595 aa15.31■□□□□ 0.04
HDAC6-213ENST00000462730 SCN1AP35498 2009 aa15.31■□□□□ 0.04
HDAC6-213ENST00000462730 SMIM28A0A1B0GU29 152 aa15.31■□□□□ 0.04
HDAC6-213ENST00000462730 PHF2O75151 1096 aa15.31■□□□□ 0.04
HDAC6-213ENST00000462730 MYCP01106 439 aaPredicted RBP15.31■□□□□ 0.04
HDAC6-213ENST00000462730 CD52P31358 61 aa15.31■□□□□ 0.04
HDAC6-213ENST00000462730 SSR1P43307 286 aaKnown RBP15.31■□□□□ 0.04
HDAC6-213ENST00000462730 TAS2R40P59535 323 aa15.31■□□□□ 0.04
HDAC6-213ENST00000462730 TRADDQ15628 312 aa15.31■□□□□ 0.04
HDAC6-213ENST00000462730 XKR4Q5GH76 650 aa15.31■□□□□ 0.04
HDAC6-213ENST00000462730 EMBQ6PCB8 327 aa15.31■□□□□ 0.04
HDAC6-213ENST00000462730 DCUN1D2Q6PH85 259 aa15.31■□□□□ 0.04
HDAC6-213ENST00000462730 DDX27Q96GQ7 796 aaKnown RBP15.31■□□□□ 0.04
HDAC6-213ENST00000462730 MRPL45Q9BRJ2 306 aaKnown RBP15.31■□□□□ 0.04
HDAC6-213ENST00000462730 PLVAPQ9BX97 442 aa15.31■□□□□ 0.04
HDAC6-213ENST00000462730 NT5C1AQ9BXI3 368 aa15.31■□□□□ 0.04
HDAC6-213ENST00000462730 TRPV6Q9H1D0 765 aa15.31■□□□□ 0.04
HDAC6-213ENST00000462730 FAM124BQ9H5Z6 455 aaPredicted RBP15.31■□□□□ 0.04
HDAC6-213ENST00000462730 CHST12Q9NRB3 414 aa15.31■□□□□ 0.04
HDAC6-213ENST00000462730 STRIP2Q9ULQ0 834 aa15.31■□□□□ 0.04
HDAC6-213ENST00000462730 PADI3Q9ULW8 664 aa15.31■□□□□ 0.04
HDAC6-213ENST00000462730 HPCAL4Q9UM19 191 aa15.31■□□□□ 0.04
HDAC6-213ENST00000462730 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.31■□□□□ 0.04
HDAC6-213ENST00000462730 TCRBV7S2A1N4TA0A589 114 aa15.3■□□□□ 0.04
HDAC6-213ENST00000462730 KBTBD13C9JR72 458 aa15.3■□□□□ 0.04
HDAC6-213ENST00000462730 BHMG1C9JSJ3 638 aaPredicted RBP15.3■□□□□ 0.04
HDAC6-213ENST00000462730 GOLGA8SH3BPF8 625 aa15.3■□□□□ 0.04
HDAC6-213ENST00000462730 O00370 1275 aa15.3■□□□□ 0.04
HDAC6-213ENST00000462730 PSTPIP1O43586 416 aa15.3■□□□□ 0.04
HDAC6-213ENST00000462730 RNF40O75150 1001 aa15.3■□□□□ 0.04
HDAC6-213ENST00000462730 SYF2O95926 243 aaKnown RBP15.3■□□□□ 0.04
HDAC6-213ENST00000462730 KCNE1P15382 129 aa15.3■□□□□ 0.04
HDAC6-213ENST00000462730 ATF7P17544 494 aaPredicted RBP15.3■□□□□ 0.04
HDAC6-213ENST00000462730 GJC1P36383 396 aa15.3■□□□□ 0.04
HDAC6-213ENST00000462730 TAP1Q03518 808 aa15.3■□□□□ 0.04
HDAC6-213ENST00000462730 LPIN1Q14693 890 aa15.3■□□□□ 0.04
HDAC6-213ENST00000462730 CNGA2Q16280 664 aa15.3■□□□□ 0.04
HDAC6-213ENST00000462730 ZNF618Q5T7W0 954 aa15.3■□□□□ 0.04
HDAC6-213ENST00000462730 RHOT1Q8IXI2 618 aa15.3■□□□□ 0.04
HDAC6-213ENST00000462730 ZDHHC14Q8IZN3 488 aa15.3■□□□□ 0.04
HDAC6-213ENST00000462730 PRELID2Q8N945 189 aa15.3■□□□□ 0.04
HDAC6-213ENST00000462730 C3orf20Q8ND61 904 aa15.3■□□□□ 0.04
HDAC6-213ENST00000462730 CAVIN3Q969G5 261 aa15.3■□□□□ 0.04
HDAC6-213ENST00000462730 TJP2Q9UDY2 1190 aa15.3■□□□□ 0.04
HDAC6-213ENST00000462730 MTUS1Q9ULD2 1270 aa15.3■□□□□ 0.04
HDAC6-213ENST00000462730 PHF24Q9UPV7 400 aa15.3■□□□□ 0.04
HDAC6-213ENST00000462730 PTPN22Q9Y2R2 807 aa15.3■□□□□ 0.04
HDAC6-213ENST00000462730 MEIS3P2A8K0S8 358 aa15.29■□□□□ 0.04
HDAC6-213ENST00000462730 XPOTO43592 962 aaKnown RBP15.29■□□□□ 0.04
HDAC6-213ENST00000462730 CD4P01730 458 aa15.29■□□□□ 0.04
HDAC6-213ENST00000462730 CYP3A5P20815 502 aa15.29■□□□□ 0.04
HDAC6-213ENST00000462730 PSMC1P62191 440 aaKnown RBP15.29■□□□□ 0.04
HDAC6-213ENST00000462730 DR1Q01658 176 aa15.29■□□□□ 0.04
HDAC6-213ENST00000462730 KCTD19Q17RG1 926 aaPredicted RBP15.29■□□□□ 0.04
HDAC6-213ENST00000462730 PPP1R15BQ5SWA1 713 aa15.29■□□□□ 0.04
HDAC6-213ENST00000462730 GOLGA6L1Q8N7Z2 621 aa15.29■□□□□ 0.04
HDAC6-213ENST00000462730 SLC43A3Q8NBI5 491 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms