RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 ACBD6Q9BR61 282 aa16.55■□□□□ 0.24
SKA3-204ENST00000462482 PI4K2AQ9BTU6 479 aa16.55■□□□□ 0.24
SKA3-204ENST00000462482 LRRC27Q9C0I9 530 aa16.55■□□□□ 0.24
SKA3-204ENST00000462482 SMG9Q9H0W8 520 aaKnown RBP16.55■□□□□ 0.24
SKA3-204ENST00000462482 ABCB6Q9NP58 842 aa16.55■□□□□ 0.24
SKA3-204ENST00000462482 TDP1Q9NUW8 608 aa16.55■□□□□ 0.24
SKA3-204ENST00000462482 DDX43Q9NXZ2 648 aaKnown RBP16.55■□□□□ 0.24
SKA3-204ENST00000462482 CACNA1IQ9P0X4 2223 aa16.54■□□□□ 0.24
SKA3-204ENST00000462482 KIAA0391O15091 583 aaKnown RBP16.54■□□□□ 0.24
SKA3-204ENST00000462482 EXTL3O43909 919 aa16.54■□□□□ 0.24
SKA3-204ENST00000462482 PCSK1P29120 753 aa16.54■□□□□ 0.24
SKA3-204ENST00000462482 LHX1P48742 406 aa16.54■□□□□ 0.24
SKA3-204ENST00000462482 CUL4AQ13619 759 aa16.54■□□□□ 0.24
SKA3-204ENST00000462482 RUNX3Q13761 415 aa16.54■□□□□ 0.24
SKA3-204ENST00000462482 CCINQ13939 588 aa16.54■□□□□ 0.24
SKA3-204ENST00000462482 MON1AQ86VX9 555 aa16.54■□□□□ 0.24
SKA3-204ENST00000462482 SPATA2LQ8IUW3 424 aaPredicted RBP16.54■□□□□ 0.24
SKA3-204ENST00000462482 CCDC65Q8IXS2 484 aa16.54■□□□□ 0.24
SKA3-204ENST00000462482 SPATA18Q8TC71 538 aa16.54■□□□□ 0.24
SKA3-204ENST00000462482 NETO1Q8TDF5 533 aa16.54■□□□□ 0.24
SKA3-204ENST00000462482 LEO1Q8WVC0 666 aaPredicted RBP16.54■□□□□ 0.24
SKA3-204ENST00000462482 DNAJC19Q96DA6 116 aa16.54■□□□□ 0.24
SKA3-204ENST00000462482 ANKRD36BP1Q96IX9 119 aa16.54■□□□□ 0.24
SKA3-204ENST00000462482 STRA6Q9BX79 667 aa16.54■□□□□ 0.24
SKA3-204ENST00000462482 IKZF4Q9H2S9 585 aa16.54■□□□□ 0.24
SKA3-204ENST00000462482 PANK4Q9NVE7 773 aa16.54■□□□□ 0.24
SKA3-204ENST00000462482 SLC8A2Q9UPR5 921 aa16.54■□□□□ 0.24
SKA3-204ENST00000462482 SNX9Q9Y5X1 595 aa16.54■□□□□ 0.24
SKA3-204ENST00000462482 OTOGLQ3ZCN5 2332 aa16.54■□□□□ 0.24
SKA3-204ENST00000462482 GPR179Q6PRD1 2367 aa16.53■□□□□ 0.24
SKA3-204ENST00000462482 TRIP11Q15643 1979 aa16.53■□□□□ 0.24
SKA3-204ENST00000462482 GOLGA8IPA6NC78 632 aa16.53■□□□□ 0.24
SKA3-204ENST00000462482 GOLGA8JA6NMD2 632 aa16.53■□□□□ 0.24
SKA3-204ENST00000462482 K7ESF4 209 aa16.53■□□□□ 0.24
SKA3-204ENST00000462482 HRO43593 1189 aa16.53■□□□□ 0.24
SKA3-204ENST00000462482 F11P03951 625 aa16.53■□□□□ 0.24
SKA3-204ENST00000462482 HOXA6P31267 233 aa16.53■□□□□ 0.24
SKA3-204ENST00000462482 KCNA1Q09470 495 aa16.53■□□□□ 0.24
SKA3-204ENST00000462482 PDGFRLQ15198 375 aa16.53■□□□□ 0.24
SKA3-204ENST00000462482 SURF1Q15526 300 aa16.53■□□□□ 0.24
SKA3-204ENST00000462482 INTS6LQ5JSJ4 861 aaKnown RBP16.53■□□□□ 0.24
SKA3-204ENST00000462482 TXNDC8Q6A555 127 aa16.53■□□□□ 0.24
SKA3-204ENST00000462482 WDR5BQ86VZ2 330 aa16.53■□□□□ 0.24
SKA3-204ENST00000462482 C1orf127Q8N9H9 656 aa16.53■□□□□ 0.24
SKA3-204ENST00000462482 FSIP1Q8NA03 581 aa16.53■□□□□ 0.24
SKA3-204ENST00000462482 TTC16Q8NEE8 873 aa16.53■□□□□ 0.24
SKA3-204ENST00000462482 USP13Q92995 863 aaPredicted RBP16.53■□□□□ 0.24
SKA3-204ENST00000462482 PANK2Q9BZ23 570 aa16.53■□□□□ 0.24
SKA3-204ENST00000462482 TRPC7Q9HCX4 862 aa16.53■□□□□ 0.24
SKA3-204ENST00000462482 PARD6AQ9NPB6 346 aa16.53■□□□□ 0.24
SKA3-204ENST00000462482 SEMA4GQ9NTN9 838 aa16.53■□□□□ 0.24
SKA3-204ENST00000462482 L1RE1Q9UN81 338 aa16.53■□□□□ 0.24
SKA3-204ENST00000462482 TNNC2P02585 160 aa16.52■□□□□ 0.24
SKA3-204ENST00000462482 HMGA1P17096 107 aaKnown RBP16.52■□□□□ 0.24
SKA3-204ENST00000462482 SYT1P21579 422 aa16.52■□□□□ 0.24
SKA3-204ENST00000462482 DMWDQ09019 674 aa16.52■□□□□ 0.24
SKA3-204ENST00000462482 RESTQ13127 1097 aa16.52■□□□□ 0.24
SKA3-204ENST00000462482 CSRP2Q16527 193 aa16.52■□□□□ 0.24
SKA3-204ENST00000462482 DDR2Q16832 855 aa16.52■□□□□ 0.24
SKA3-204ENST00000462482 C4orf50Q6ZRC1 276 aa16.52■□□□□ 0.24
SKA3-204ENST00000462482 ADGRF2Q8IZF7 708 aa16.52■□□□□ 0.24
SKA3-204ENST00000462482 GPD1LQ8N335 351 aa16.52■□□□□ 0.24
SKA3-204ENST00000462482 CPA6Q8N4T0 437 aa16.52■□□□□ 0.24
SKA3-204ENST00000462482 TOP6BLQ8N6T0 577 aa16.52■□□□□ 0.24
SKA3-204ENST00000462482 FAM83CQ9BQN1 747 aa16.52■□□□□ 0.24
SKA3-204ENST00000462482 ZSCAN16Q9H4T2 348 aaPredicted RBP16.52■□□□□ 0.24
SKA3-204ENST00000462482 EBF3Q9H4W6 596 aa16.52■□□□□ 0.24
SKA3-204ENST00000462482 PCIF1Q9H4Z3 704 aa16.52■□□□□ 0.24
SKA3-204ENST00000462482 TMLHEQ9NVH6 421 aa16.52■□□□□ 0.24
SKA3-204ENST00000462482 GDAP2Q9NXN4 497 aa16.52■□□□□ 0.24
SKA3-204ENST00000462482 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.52■□□□□ 0.24
SKA3-204ENST00000462482 CACNA1AO00555 2505 aa16.52■□□□□ 0.23
SKA3-204ENST00000462482 TRAV19A0A0A6YYK7 116 aa16.51■□□□□ 0.23
SKA3-204ENST00000462482 LOC105378220A0A1B0GUY1 285 aaPredicted RBP16.51■□□□□ 0.23
SKA3-204ENST00000462482 DCDC2BA2VCK2 349 aa16.51■□□□□ 0.23
SKA3-204ENST00000462482 ZNF233A6NK53 670 aa16.51■□□□□ 0.23
SKA3-204ENST00000462482 CKMP06732 381 aa16.51■□□□□ 0.23
SKA3-204ENST00000462482 USP17L7P0C7H9 530 aa16.51■□□□□ 0.23
SKA3-204ENST00000462482 TGM1P22735 817 aa16.51■□□□□ 0.23
SKA3-204ENST00000462482 ACAT1P24752 427 aaKnown RBP16.51■□□□□ 0.23
SKA3-204ENST00000462482 CYP2F1P24903 491 aa16.51■□□□□ 0.23
SKA3-204ENST00000462482 GPR15P49685 360 aa16.51■□□□□ 0.23
SKA3-204ENST00000462482 SRSF5Q13243 272 aaKnown RBP16.51■□□□□ 0.23
SKA3-204ENST00000462482 ZNF268Q14587 947 aaPredicted RBP16.51■□□□□ 0.23
SKA3-204ENST00000462482 SLC39A14Q15043 492 aa16.51■□□□□ 0.23
SKA3-204ENST00000462482 SDHAF4Q5VUM1 108 aa16.51■□□□□ 0.23
SKA3-204ENST00000462482 DPH6Q7L8W6 267 aa16.51■□□□□ 0.23
SKA3-204ENST00000462482 SCN4BQ8IWT1 228 aa16.51■□□□□ 0.23
SKA3-204ENST00000462482 TRMT2BQ96GJ1 504 aaKnown RBP16.51■□□□□ 0.23
SKA3-204ENST00000462482 FUBP3Q96I24 572 aaKnown RBP eCLIP16.51■□□□□ 0.23
SKA3-204ENST00000462482 CBWD1Q9BRT8 395 aa16.51■□□□□ 0.23
SKA3-204ENST00000462482 MTMR12Q9C0I1 747 aa16.51■□□□□ 0.23
SKA3-204ENST00000462482 PDE11AQ9HCR9 933 aa16.51■□□□□ 0.23
SKA3-204ENST00000462482 GTF3C4Q9UKN8 822 aa16.51■□□□□ 0.23
SKA3-204ENST00000462482 CCL26Q9Y258 94 aa16.51■□□□□ 0.23
SKA3-204ENST00000462482 PATJQ8NI35 1801 aa16.51■□□□□ 0.23
SKA3-204ENST00000462482 TRDMT1O14717 391 aaKnown RBP16.5■□□□□ 0.23
SKA3-204ENST00000462482 NOL4O94818 638 aa16.5■□□□□ 0.23
SKA3-204ENST00000462482 PRPF6O94906 941 aaKnown RBP16.5■□□□□ 0.23
SKA3-204ENST00000462482 CCDC192P0DO97 292 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms