RNA–Protein interactions for RNA: ENST00000458038.5

CPNE1-220, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-220ENST00000458038 ARHGAP30Q7Z6I6 1101 aaPredicted RBP23.18■■□□□ 1.3
CPNE1-220ENST00000458038 WDR5BQ86VZ2 330 aa23.18■■□□□ 1.3
CPNE1-220ENST00000458038 LRRC52Q8N7C0 313 aa23.18■■□□□ 1.3
CPNE1-220ENST00000458038 TTC8Q8TAM2 541 aa23.18■■□□□ 1.3
CPNE1-220ENST00000458038 FAM83CQ9BQN1 747 aa23.18■■□□□ 1.3
CPNE1-220ENST00000458038 OLFML3Q9NRN5 406 aa23.18■■□□□ 1.3
CPNE1-220ENST00000458038 TDP1Q9NUW8 608 aa23.18■■□□□ 1.3
CPNE1-220ENST00000458038 CNOT1A5YKK6 2376 aaKnown RBP23.18■■□□□ 1.3
CPNE1-220ENST00000458038 CCDC163A0A0D9SF12 145 aa23.17■■□□□ 1.3
CPNE1-220ENST00000458038 HUS1O60921 280 aa23.17■■□□□ 1.3
CPNE1-220ENST00000458038 HMGA1P17096 107 aaKnown RBP23.17■■□□□ 1.3
CPNE1-220ENST00000458038 RPL10AP62906 217 aaKnown RBP23.17■■□□□ 1.3
CPNE1-220ENST00000458038 GRSF1Q12849 480 aaKnown RBP eCLIP23.17■■□□□ 1.33e-10■□□□□ 10.9
CPNE1-220ENST00000458038 RUNX3Q13761 415 aa23.17■■□□□ 1.3
CPNE1-220ENST00000458038 BRSK2Q8IWQ3 736 aa23.17■■□□□ 1.3
CPNE1-220ENST00000458038 MAB21L3Q8N8X9 362 aa23.17■■□□□ 1.3
CPNE1-220ENST00000458038 MRPS31Q92665 395 aaKnown RBP23.17■■□□□ 1.3
CPNE1-220ENST00000458038 DNAJC19Q96DA6 116 aa23.17■■□□□ 1.3
CPNE1-220ENST00000458038 FAM213AQ9BRX8 229 aa23.17■■□□□ 1.3
CPNE1-220ENST00000458038 VPS37CA5D8V6 355 aaPredicted RBP23.16■■□□□ 1.3
CPNE1-220ENST00000458038 PRPF40AO75400 957 aaKnown RBP23.16■■□□□ 1.3
CPNE1-220ENST00000458038 TFAMQ00059 246 aaKnown RBP23.16■■□□□ 1.3
CPNE1-220ENST00000458038 MYL7Q01449 175 aa23.16■■□□□ 1.3
CPNE1-220ENST00000458038 ZNF268Q14587 947 aaPredicted RBP23.16■■□□□ 1.3
CPNE1-220ENST00000458038 CC2D1AQ6P1N0 951 aaPredicted RBP23.16■■□□□ 1.3
CPNE1-220ENST00000458038 CCDC73Q6ZRK6 1079 aa23.16■■□□□ 1.3
CPNE1-220ENST00000458038 USP49Q70CQ1 688 aa23.16■■□□□ 1.3
CPNE1-220ENST00000458038 CEP68Q76N32 757 aa23.16■■□□□ 1.3
CPNE1-220ENST00000458038 TMEM150AQ86TG1 271 aa23.16■■□□□ 1.3
CPNE1-220ENST00000458038 MON1AQ86VX9 555 aa23.16■■□□□ 1.3
CPNE1-220ENST00000458038 SEMA4GQ9NTN9 838 aa23.16■■□□□ 1.3
CPNE1-220ENST00000458038 FBXO2Q9UK22 296 aaPredicted RBP23.16■■□□□ 1.3
CPNE1-220ENST00000458038 ITGA11Q9UKX5 1188 aa23.16■■□□□ 1.3
CPNE1-220ENST00000458038 AGAP1Q9UPQ3 857 aa23.16■■□□□ 1.3
CPNE1-220ENST00000458038 CLIC4Q9Y696 253 aa23.16■■□□□ 1.3
CPNE1-220ENST00000458038 MORC2Q9Y6X9 1032 aaPredicted RBP23.16■■□□□ 1.3
CPNE1-220ENST00000458038 ATG2BQ96BY7 2078 aa23.16■■□□□ 1.3
CPNE1-220ENST00000458038 OBSL1O75147 1896 aa23.15■■□□□ 1.3
CPNE1-220ENST00000458038 MYMKA6NI61 221 aa23.15■■□□□ 1.3
CPNE1-220ENST00000458038 TRDMT1O14717 391 aaKnown RBP23.15■■□□□ 1.3
CPNE1-220ENST00000458038 SLC30A4O14863 429 aa23.15■■□□□ 1.3
CPNE1-220ENST00000458038 POLR2BP30876 1174 aaKnown RBP23.15■■□□□ 1.3
CPNE1-220ENST00000458038 LHX1P48742 406 aa23.15■■□□□ 1.3
CPNE1-220ENST00000458038 DMWDQ09019 674 aa23.15■■□□□ 1.3
CPNE1-220ENST00000458038 CUL4AQ13619 759 aa23.15■■□□□ 1.3
CPNE1-220ENST00000458038 TMEM196Q5HYL7 178 aa23.15■■□□□ 1.3
CPNE1-220ENST00000458038 HEATR6Q6AI08 1181 aaKnown RBP23.15■■□□□ 1.3
CPNE1-220ENST00000458038 SYCP3Q8IZU3 236 aa23.15■■□□□ 1.3
CPNE1-220ENST00000458038 PDCL2Q8N4E4 241 aa23.15■■□□□ 1.3
CPNE1-220ENST00000458038 USP13Q92995 863 aaPredicted RBP23.15■■□□□ 1.3
CPNE1-220ENST00000458038 TRMT2BQ96GJ1 504 aaKnown RBP23.15■■□□□ 1.3
CPNE1-220ENST00000458038 GDAP2Q9NXN4 497 aa23.15■■□□□ 1.3
CPNE1-220ENST00000458038 RBAKQ9NYW8 714 aaPredicted RBP23.15■■□□□ 1.3
CPNE1-220ENST00000458038 KIAA0391O15091 583 aaKnown RBP23.14■■□□□ 1.29
CPNE1-220ENST00000458038 GCNT3O95395 438 aa23.14■■□□□ 1.29
CPNE1-220ENST00000458038 ITGB3P05106 788 aa23.14■■□□□ 1.29
CPNE1-220ENST00000458038 KCNA1Q09470 495 aa23.14■■□□□ 1.29
CPNE1-220ENST00000458038 PDGFRLQ15198 375 aa23.14■■□□□ 1.29
CPNE1-220ENST00000458038 PRR23CQ6ZRP0 262 aa23.14■■□□□ 1.29
CPNE1-220ENST00000458038 C1orf127Q8N9H9 656 aa23.14■■□□□ 1.29
CPNE1-220ENST00000458038 LOXL4Q96JB6 756 aa23.14■■□□□ 1.29
CPNE1-220ENST00000458038 MYRFLQ96LU7 910 aa23.14■■□□□ 1.29
CPNE1-220ENST00000458038 PI4K2AQ9BTU6 479 aa23.14■■□□□ 1.29
CPNE1-220ENST00000458038 SMG9Q9H0W8 520 aaKnown RBP23.14■■□□□ 1.29
CPNE1-220ENST00000458038 IKZF4Q9H2S9 585 aa23.14■■□□□ 1.29
CPNE1-220ENST00000458038 DDX43Q9NXZ2 648 aaKnown RBP23.14■■□□□ 1.29
CPNE1-220ENST00000458038 R3HCC1Q9Y3T6 440 aaKnown RBP23.14■■□□□ 1.29
CPNE1-220ENST00000458038 DYNC1LI1Q9Y6G9 523 aaKnown RBP23.14■■□□□ 1.29
CPNE1-220ENST00000458038 DCDC2BA2VCK2 349 aa23.13■■□□□ 1.29
CPNE1-220ENST00000458038 EXTL3O43909 919 aa23.13■■□□□ 1.29
CPNE1-220ENST00000458038 PCSK1P29120 753 aa23.13■■□□□ 1.29
CPNE1-220ENST00000458038 RBP5P82980 135 aa23.13■■□□□ 1.29
CPNE1-220ENST00000458038 FAM160A2Q8N612 972 aaPredicted RBP23.13■■□□□ 1.29
CPNE1-220ENST00000458038 CSGALNACT2Q8N6G5 542 aa23.13■■□□□ 1.29
CPNE1-220ENST00000458038 TOP6BLQ8N6T0 577 aa23.13■■□□□ 1.29
CPNE1-220ENST00000458038 DDX1Q92499 740 aaKnown RBP23.13■■□□□ 1.29
CPNE1-220ENST00000458038 FUBP3Q96I24 572 aaKnown RBP eCLIP23.13■■□□□ 1.29
CPNE1-220ENST00000458038 TMEM206Q9H813 350 aa23.13■■□□□ 1.29
CPNE1-220ENST00000458038 HPS4Q9NQG7 708 aa23.13■■□□□ 1.29
CPNE1-220ENST00000458038 TMLHEQ9NVH6 421 aa23.13■■□□□ 1.29
CPNE1-220ENST00000458038 TBC1D7Q9P0N9 293 aa23.13■■□□□ 1.29
CPNE1-220ENST00000458038 L1RE1Q9UN81 338 aa23.13■■□□□ 1.29
CPNE1-220ENST00000458038 MAGED2Q9UNF1 606 aaPredicted RBP23.13■■□□□ 1.29
CPNE1-220ENST00000458038 GREB1Q4ZG55 1949 aa23.12■■□□□ 1.29
CPNE1-220ENST00000458038 FRMD3A2A2Y4 597 aa23.12■■□□□ 1.29
CPNE1-220ENST00000458038 CENPBP07199 599 aaPredicted RBP23.12■■□□□ 1.29
CPNE1-220ENST00000458038 IDEP14735 1019 aa23.12■■□□□ 1.29
CPNE1-220ENST00000458038 DRD1P21728 446 aa23.12■■□□□ 1.29
CPNE1-220ENST00000458038 CDR1P51861 262 aa23.12■■□□□ 1.29
CPNE1-220ENST00000458038 CFAP221Q4G0U5 840 aa23.12■■□□□ 1.29
CPNE1-220ENST00000458038 FBXO43Q4G163 708 aa23.12■■□□□ 1.29
CPNE1-220ENST00000458038 INTS6LQ5JSJ4 861 aaKnown RBP23.12■■□□□ 1.29
CPNE1-220ENST00000458038 TXNDC8Q6A555 127 aa23.12■■□□□ 1.29
CPNE1-220ENST00000458038 STXBP4Q6ZWJ1 553 aa23.12■■□□□ 1.29
CPNE1-220ENST00000458038 DPH6Q7L8W6 267 aa23.12■■□□□ 1.29
CPNE1-220ENST00000458038 CAMKK1Q8N5S9 505 aa23.12■■□□□ 1.29
CPNE1-220ENST00000458038 SAAL1Q96ER3 474 aa23.12■■□□□ 1.29
CPNE1-220ENST00000458038 EBF3Q9H4W6 596 aa23.12■■□□□ 1.29
CPNE1-220ENST00000458038 C2orf42Q9NWW7 574 aa23.12■■□□□ 1.29
CPNE1-220ENST00000458038 SLC8A2Q9UPR5 921 aa23.12■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms